>SEN2_ASHGO (Q74ZY5) tRNA-splicing endonuclease subunit SEN2 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN2)
          Length = 356

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 230 ESYWRSRMVDGVTAEDDKVTPVYKLEEICELLRASDAGIVKEVADFVLKRLD 385
           E  W++R VD +  + + +   +KLE++ +L R       +E A F  KRL+
Sbjct: 87  EPTWQARTVDRLQLDTEGIAG-HKLEQVTQLRRKQRLEFKRERASFERKRLE 137

>FBRL_CAEEL (Q22053) Fibrillarin|
          Length = 352

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +3

Query: 180 GFGRRGGAPWIRAGGRSSPTGGRG 251
           GFG RG +P    GGR SP GGRG
Sbjct: 77  GFGGRG-SPRGGFGGRGSPRGGRG 99



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 GFGRRGGAPWIRAGGRSSPTGGRG 251
           GFG RG       GGR SP GGRG
Sbjct: 87  GFGGRGSP----RGGRGSPRGGRG 106

>EFG1_TREDE (Q73R08) Elongation factor G 1 (EF-G 1)|
          Length = 683

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 203 AMDQSRRAVESYWRSRMVDGVTAEDDKVTPVYKLEEICELLRASDAGIVKEVADFVLKR 379
           A+ Q R A+   WR +M+D +++  D++T     E I E     +  I KE+   VL +
Sbjct: 194 AIAQERLALAEEWREKMLDTISSASDEIT-----ELILEGKDVPEELIKKEIRKAVLNQ 247

>GLUQ_BURPS (Q63VY0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 297

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 239 WRSRMVDG---VTAEDDKVTPVYKLEEICELLRASDAGIVKEVADFVLKRLDNK 391
           WR R+ DG   V A DD+              RA    +  EV DFVLKR D +
Sbjct: 138 WRLRVPDGAAAVVAFDDRWQ------------RAQTQNLATEVGDFVLKRADGQ 179

>GLUQ_BURMA (Q62IG0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 297

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 239 WRSRMVDG---VTAEDDKVTPVYKLEEICELLRASDAGIVKEVADFVLKRLDNK 391
           WR R+ DG   V A DD+              RA    +  EV DFVLKR D +
Sbjct: 138 WRLRVPDGAAAVVAFDDRWQ------------RAQTQNLATEVGDFVLKRADGQ 179

>JHD1_DROME (Q9VHH9) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1345

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 120 LRSRPPWWCHAAVAVASLS*GFGRRGGAPWIRAGGRS------SPTGG 245
           L+ RPP   H A A+ + +      GG P    GG +      SPTGG
Sbjct: 568 LKYRPPKKMHLATALVAAAASSSSGGGGPVAGVGGSAVVGSSHSPTGG 615

>CV106_HUMAN (Q6P0N0) Protein C14orf106 (P243)|
          Length = 1132

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 284 VTPVYK---LEEICELLRASDAGIVKEVADFVLKRLDNKSPLVK 406
           VTP+     +E+ C     S AG +K V DFV+     KSP+ K
Sbjct: 652 VTPLKSRKVIEQRCMRYNLS-AGTIKAVTDFVIPECQKKSPISK 694

>CACB3_BOVIN (Q9MZL3) Voltage-dependent L-type calcium channel beta-3 subunit|
           (CAB3) (Calcium channel, voltage-dependent, beta 3
           subunit)
          Length = 484

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 AVHHPRPPVGLDRPPALIHG 203
           A HHP P +GL  PP+ I G
Sbjct: 359 ATHHPAPALGLLGPPSAIPG 378

>DCUP_CAMJE (Q9PN54) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)|
          Length = 340

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 278 DKVTPVYKLEEICELLRASDAGIVKEVADFVLKRLDNKSPLVKL 409
           DK++  Y L+   E  R  D   +KE  + +LK + NK+ +  L
Sbjct: 271 DKLSHKYTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNL 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,269,091
Number of Sequences: 219361
Number of extensions: 570606
Number of successful extensions: 2144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)