ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188633.1| Oryza sativa (japonica cultivar-group), Ozsa823... 276 5e-71
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 276 5e-71
3dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 276 5e-71
4dbj|AK106519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
5dbj|AK101990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
6emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 50 0.006
7gb|AC000159.6| Homo sapiens Chromosome 11q13 BAC Clone b79g17, c... 50 0.006
8dbj|AP001187.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 50 0.006
9ref|XM_799202.1| Trypanosoma cruzi strain CL Brener inosine-5'-m... 44 0.35
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.35
11ref|NM_001034452.1| Bos taurus similar to CG12360-PA, isoform A ... 42 1.4
12gb|AF108083.1| Homo sapiens chromosome 7 BAC clone F5, complete ... 42 1.4
13gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, comple... 42 1.4
14ref|XM_800679.1| Trypanosoma cruzi strain CL Brener inosine-5'-m... 42 1.4
15ref|XM_810396.1| Trypanosoma cruzi strain CL Brener inosine-5'-m... 42 1.4
16gb|AC146169.2| Pan troglodytes BAC clone RP43-1A11 from 7, compl... 42 1.4
17emb|Z28351.1|RR25HV3H R.rattus gene for 25-hydroxyvitamin D3 24-... 42 1.4
18emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 1.4
19emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 42 1.4
20gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, comp... 42 1.4
21gb|U86900.1|MCU86900 Molluscum contagiosum virus subtype 1 clone... 42 1.4
22gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.4
23dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.4
24dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
25gb|BT021644.1| Bos taurus hypothetical protein PP2447 (PP2447), ... 42 1.4
26gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.4
27gb|L04608.1|RATVITD01 Rattus norvegicus 25-hydroxyvitamin D3 24-... 42 1.4
28dbj|D17792.1|RAT25HD3 Rattus norvegicus gene for 25-hydroxyvitam... 42 1.4
29gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
30gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
31emb|AL358941.13| Human DNA sequence from clone RP11-342L9 on chr... 40 5.5
32gb|DQ298254.1| Chlamydomonas reinhardtii radial spoke protein 1 ... 40 5.5
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
35ref|XM_225880.3| PREDICTED: Rattus norvegicus similar to Hypothe... 40 5.5
36dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
38emb|AL929160.11| Mouse DNA sequence from clone RP23-98B9 on chro... 40 5.5
39dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.5
41dbj|AB093299.1| Mus musculus mRNA for mKIAA1728 protein 40 5.5
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
43ref|NM_198294.2| Mus musculus tetratricopeptide repeat, ankyrin ... 40 5.5
44gb|M29529.1|CRAGFNA3 Goldfish (C.auratus) nicotinic receptor sub... 40 5.5 
>ref|NM_188633.1| Oryza sativa (japonica cultivar-group), Ozsa8236 predicted mRNA
          Length = 2160

 Score =  276 bits (139), Expect = 5e-71
 Identities = 190/207 (91%)
 Strand = Plus / Plus

                                                                       
Query: 206 atggatcagagccggcgggcggtcgagtcctactggcggtcgcggatggtggacggcgtc 265
           |||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 1   atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtc 60

                                                                       
Query: 266 acggccgaggacgacaaggtcacccccgtctacaagctcgaggagatctgcgagctgctg 325
           ||||| || |||||||||||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 61  acggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctc 120

                                                                       
Query: 326 cgcgcctccgacgccggcattgtcaaggaggtcgccgacttcgtcctcaagcgcctcgac 385
           ||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 121 cgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgac 180

                                      
Query: 386 aacaagagccccctcgtcaagctgaag 412
           |||||||||||| ||||||||| ||||
Sbjct: 181 aacaagagccccgtcgtcaagcagaag 207
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  276 bits (139), Expect = 5e-71
 Identities = 190/207 (91%)
 Strand = Plus / Plus

                                                                           
Query: 206     atggatcagagccggcgggcggtcgagtcctactggcggtcgcggatggtggacggcgtc 265
               |||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 7332980 atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtc 7333039

                                                                           
Query: 266     acggccgaggacgacaaggtcacccccgtctacaagctcgaggagatctgcgagctgctg 325
               ||||| || |||||||||||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 7333040 acggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctc 7333099

                                                                           
Query: 326     cgcgcctccgacgccggcattgtcaaggaggtcgccgacttcgtcctcaagcgcctcgac 385
               ||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 7333100 cgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgac 7333159

                                          
Query: 386     aacaagagccccctcgtcaagctgaag 412
               |||||||||||| ||||||||| ||||
Sbjct: 7333160 aacaagagccccgtcgtcaagcagaag 7333186
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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431F01
          Length = 143209

 Score =  276 bits (139), Expect = 5e-71
 Identities = 190/207 (91%)
 Strand = Plus / Plus

                                                                          
Query: 206    atggatcagagccggcgggcggtcgagtcctactggcggtcgcggatggtggacggcgtc 265
              |||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 134410 atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtc 134469

                                                                          
Query: 266    acggccgaggacgacaaggtcacccccgtctacaagctcgaggagatctgcgagctgctg 325
              ||||| || |||||||||||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 134470 acggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctc 134529

                                                                          
Query: 326    cgcgcctccgacgccggcattgtcaaggaggtcgccgacttcgtcctcaagcgcctcgac 385
              ||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 134530 cgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgac 134589

                                         
Query: 386    aacaagagccccctcgtcaagctgaag 412
              |||||||||||| ||||||||| ||||
Sbjct: 134590 aacaagagccccgtcgtcaagcagaag 134616
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>dbj|AK106519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C06, full
           insert sequence
          Length = 2644

 Score =  276 bits (139), Expect = 5e-71
 Identities = 190/207 (91%)
 Strand = Plus / Plus

                                                                       
Query: 206 atggatcagagccggcgggcggtcgagtcctactggcggtcgcggatggtggacggcgtc 265
           |||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 84  atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtc 143

                                                                       
Query: 266 acggccgaggacgacaaggtcacccccgtctacaagctcgaggagatctgcgagctgctg 325
           ||||| || |||||||||||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 144 acggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctc 203

                                                                       
Query: 326 cgcgcctccgacgccggcattgtcaaggaggtcgccgacttcgtcctcaagcgcctcgac 385
           ||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 204 cgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgac 263

                                      
Query: 386 aacaagagccccctcgtcaagctgaag 412
           |||||||||||| ||||||||| ||||
Sbjct: 264 aacaagagccccgtcgtcaagcagaag 290
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>dbj|AK101990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079D23, full
           insert sequence
          Length = 2651

 Score =  276 bits (139), Expect = 5e-71
 Identities = 190/207 (91%)
 Strand = Plus / Plus

                                                                       
Query: 206 atggatcagagccggcgggcggtcgagtcctactggcggtcgcggatggtggacggcgtc 265
           |||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 154 atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtc 213

                                                                       
Query: 266 acggccgaggacgacaaggtcacccccgtctacaagctcgaggagatctgcgagctgctg 325
           ||||| || |||||||||||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 214 acggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctc 273

                                                                       
Query: 326 cgcgcctccgacgccggcattgtcaaggaggtcgccgacttcgtcctcaagcgcctcgac 385
           ||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 274 cgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgac 333

                                      
Query: 386 aacaagagccccctcgtcaagctgaag 412
           |||||||||||| ||||||||| ||||
Sbjct: 334 aacaagagccccgtcgtcaagcagaag 360
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 319  gctgctgcgcgcctccgacgccggc 343
            |||||||||||||||||||||||||
Sbjct: 8707 gctgctgcgcgcctccgacgccggc 8731
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>gb|AC000159.6| Homo sapiens Chromosome 11q13 BAC Clone b79g17, complete sequence
          Length = 108523

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 103   ccaccgccagcccccctctcagatc 127
             |||||||||||||||||||||||||
Sbjct: 78152 ccaccgccagcccccctctcagatc 78176
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>dbj|AP001187.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-665N17, complete
              sequence
          Length = 171793

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 103    ccaccgccagcccccctctcagatc 127
              |||||||||||||||||||||||||
Sbjct: 100354 ccaccgccagcccccctctcagatc 100330
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>ref|XM_799202.1| Trypanosoma cruzi strain CL Brener inosine-5'-monophosphate
           dehydrogenase (Tc00.1047053511351.9) partial mRNA
          Length = 605

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 256 ggacggcgtcacggccgaggac 277
           ||||||||||||||||||||||
Sbjct: 36  ggacggcgtcacggccgaggac 57
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 326     cgcgcctccgacgccggcattg 347
               ||||||||||||||||||||||
Sbjct: 3732583 cgcgcctccgacgccggcattg 3732604
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>ref|NM_001034452.1| Bos taurus similar to CG12360-PA, isoform A (PP2447), mRNA
          Length = 1290

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 317 gagctgctgcgcgcctccgacgccg 341
           ||||||| |||||||||||||||||
Sbjct: 870 gagctgccgcgcgcctccgacgccg 894
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>gb|AF108083.1| Homo sapiens chromosome 7 BAC clone F5, complete sequence
          Length = 65489

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   cctggtggtgccacgctgccg 156
             |||||||||||||||||||||
Sbjct: 48885 cctggtggtgccacgctgccg 48905
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>gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, complete sequence
          Length = 157075

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   cctggtggtgccacgctgccg 156
             |||||||||||||||||||||
Sbjct: 47063 cctggtggtgccacgctgccg 47043
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>ref|XM_800679.1| Trypanosoma cruzi strain CL Brener inosine-5'-monophosphate
           dehydrogenase (Tc00.1047053507211.40) partial mRNA
          Length = 1539

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 256 ggacggcgtcacggccgagga 276
           |||||||||||||||||||||
Sbjct: 36  ggacggcgtcacggccgagga 56
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>ref|XM_810396.1| Trypanosoma cruzi strain CL Brener inosine-5'-monophosphate
           dehydrogenase (Tc00.1047053511301.110) partial mRNA
          Length = 1539

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 256 ggacggcgtcacggccgagga 276
           |||||||||||||||||||||
Sbjct: 36  ggacggcgtcacggccgagga 56
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>gb|AC146169.2| Pan troglodytes BAC clone RP43-1A11 from 7, complete sequence
          Length = 190018

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    cctggtggtgccacgctgccg 156
              |||||||||||||||||||||
Sbjct: 142957 cctggtggtgccacgctgccg 142937
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>emb|Z28351.1|RR25HV3H R.rattus gene for 25-hydroxyvitamin D3 24-hydroxylase (partial)
          Length = 1419

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 21  cacgcctcctcgccctcctcc 41
           |||||||||||||||||||||
Sbjct: 382 cacgcctcctcgccctcctcc 362
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     ctcgccctcctccggccgcac 49
              |||||||||||||||||||||
Sbjct: 165526 ctcgccctcctccggccgcac 165506
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 319    gctgctgcgcgcctccgacgccggc 343
              |||||||||||||||||| ||||||
Sbjct: 100169 gctgctgcgcgcctccgaggccggc 100193
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>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome
          Length = 190289

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 316   cgagctgctgcgcgcctccgacgcc 340
             |||||||||||||||| ||||||||
Sbjct: 38004 cgagctgctgcgcgccgccgacgcc 37980
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>gb|U86900.1|MCU86900 Molluscum contagiosum virus subtype 1 clone H1-60 homolog of
           vaccinia E2L (H1-60.1) and unknown (H1-60.2) genes,
           partial cds
          Length = 1479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 316 cgagctgctgcgcgcctccgacgcc 340
           |||||||||||||||| ||||||||
Sbjct: 710 cgagctgctgcgcgccgccgacgcc 686
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 364     cttcgtcctcaagcgcctcga 384
               |||||||||||||||||||||
Sbjct: 1096181 cttcgtcctcaagcgcctcga 1096201



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 320     ctgctgcgcgcctccgacgc 339
               ||||||||||||||||||||
Sbjct: 1334311 ctgctgcgcgcctccgacgc 1334330
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     cgcctcctcgccctcctccgg 43
              |||||||||||||||||||||
Sbjct: 364135 cgcctcctcgccctcctccgg 364115
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    cggcgtcacggccgaggacga 279
              |||||||||||||||||||||
Sbjct: 664346 cggcgtcacggccgaggacga 664366
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>gb|BT021644.1| Bos taurus hypothetical protein PP2447 (PP2447), mRNA, complete cds
          Length = 1290

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 317 gagctgctgcgcgcctccgacgccg 341
           ||||||| |||||||||||||||||
Sbjct: 870 gagctgccgcgcgcctccgacgccg 894
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    cgcctcctcgccctcctccgg 43
             |||||||||||||||||||||
Sbjct: 13230 cgcctcctcgccctcctccgg 13210
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>gb|L04608.1|RATVITD01 Rattus norvegicus 25-hydroxyvitamin D3 24-hydroxylase (CYP24) gene,
           exon 1
          Length = 1147

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 21  cacgcctcctcgccctcctcc 41
           |||||||||||||||||||||
Sbjct: 250 cacgcctcctcgccctcctcc 230
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>dbj|D17792.1|RAT25HD3 Rattus norvegicus gene for 25-hydroxyvitamin D3 24-hydroxylase
           (P-450cc24), 5'-flanking region and exon 1 (partial)
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 21  cacgcctcctcgccctcctcc 41
           |||||||||||||||||||||
Sbjct: 832 cacgcctcctcgccctcctcc 812
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>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0002C14, complete sequence
          Length = 154029

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    ggccgaggacgacaaggtca 287
              ||||||||||||||||||||
Sbjct: 153143 ggccgaggacgacaaggtca 153162
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   ggccgaggacgacaaggtca 287
             ||||||||||||||||||||
Sbjct: 50903 ggccgaggacgacaaggtca 50922
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>emb|AL358941.13| Human DNA sequence from clone RP11-342L9 on chromosome 1 Contains
            part of the SMYD3 gene for SET and MYND domain containing
            3, complete sequence
          Length = 28801

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  cctccctctcttagggtttc 185
            ||||||||||||||||||||
Sbjct: 3796 cctccctctcttagggtttc 3777
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>gb|DQ298254.1| Chlamydomonas reinhardtii radial spoke protein 1 (RSP1) mRNA,
            complete cds
          Length = 3103

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   cctcctcgccctcctccggc 44
            ||||||||||||||||||||
Sbjct: 1212 cctcctcgccctcctccggc 1193
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 268      ggccgaggacgacaaggtca 287
                ||||||||||||||||||||
Sbjct: 26249254 ggccgaggacgacaaggtca 26249273
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 30       tcgccctcctccggccgcacgtgc 53
                |||||||||||||||||| |||||
Sbjct: 16893303 tcgccctcctccggccgcccgtgc 16893280
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>ref|XM_225880.3| PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0233
            (predicted) (LOC307380), mRNA
          Length = 9223

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  ggagatctgcgagctgctgc 326
            ||||||||||||||||||||
Sbjct: 6646 ggagatctgcgagctgctgc 6627
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    tcgccctcctccggccgcacgtgc 53
             |||||||||||||||||| |||||
Sbjct: 23116 tcgccctcctccggccgcccgtgc 23093
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>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    tcgccctcctccggccgcacgtgc 53
             |||||||||||||||||| |||||
Sbjct: 90994 tcgccctcctccggccgcccgtgc 90971
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>emb|AL929160.11| Mouse DNA sequence from clone RP23-98B9 on chromosome 2, complete
             sequence
          Length = 107366

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ggagatctgcgagctgctgc 326
             ||||||||||||||||||||
Sbjct: 91984 ggagatctgcgagctgctgc 92003
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>dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E01,
          full insert sequence
          Length = 1189

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 30 tcgccctcctccggccgcacgtgc 53
          |||||||||||||||||| |||||
Sbjct: 34 tcgccctcctccggccgcccgtgc 57
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 304     cgaggagatctgcgagctgctgcgcgcc 331
               ||||| ||||||||||| ||||||||||
Sbjct: 3289834 cgaggcgatctgcgagcggctgcgcgcc 3289861
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>dbj|AB093299.1| Mus musculus mRNA for mKIAA1728 protein
          Length = 5534

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  ggagatctgcgagctgctgc 326
            ||||||||||||||||||||
Sbjct: 1638 ggagatctgcgagctgctgc 1657
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 268      ggccgaggacgacaaggtca 287
                ||||||||||||||||||||
Sbjct: 26563512 ggccgaggacgacaaggtca 26563531
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>ref|NM_198294.2| Mus musculus tetratricopeptide repeat, ankyrin repeat and coiled-coil
            containing 1 (Tanc1), mRNA
          Length = 7873

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  ggagatctgcgagctgctgc 326
            ||||||||||||||||||||
Sbjct: 3543 ggagatctgcgagctgctgc 3562
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>gb|M29529.1|CRAGFNA3 Goldfish (C.auratus) nicotinic receptor subunit (GFn-alpha-3) mRNA,
            complete cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   cctcctcgccctcctccggc 44
            ||||||||||||||||||||
Sbjct: 1310 cctcctcgccctcctccggc 1291


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,362,359
Number of Sequences: 3902068
Number of extensions: 2362359
Number of successful extensions: 53558
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52495
Number of HSP's gapped (non-prelim): 1063
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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