ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55f01 |
|---|---|
| Clone Library Name | barley_pub |
>ANKS1_HUMAN (Q92625) Ankyrin repeat and SAM domain-containing protein 1A (Odin)| Length = 1133 Score = 36.2 bits (82), Expect = 0.019 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +2 Query: 119 RRHGRL--PGAPARERGFGVASSHRRAKSWRRPPLLGAP 229 RRH L P AP+R F + HR AK RPP L AP Sbjct: 882 RRHDSLHDPAAPSRAERFRIQEEHREAKLTLRPPSLAAP 920
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 104 ATSEPRR--HGRLPGAPARERGFGVASSHRRAKSWRRPPL 217 A S P R G P P R++G G S H++ S RR PL Sbjct: 396 APSTPPRASSGAAPQTPKRKKGLGKDSPHKKPTSGRRLPL 435
>PROQ_YERPE (Q8ZFJ9) ProP effector| Length = 237 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/65 (29%), Positives = 24/65 (36%) Frame = +2 Query: 38 ARISRQNFELLXXXXXXXXXXXATSEPRRHGRLPGAPARERGFGVASSHRRAKSWRRPPL 217 AR+ Q E T EPRR PA R G A +R+ + RP Sbjct: 108 ARVQAQRAEQQAKKREAAIAAGETPEPRRPRPAGKKPAPRREAGAAPENRKPRQSPRPQQ 167 Query: 218 LGAPR 232 + PR Sbjct: 168 VRPPR 172
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 28.9 bits (63), Expect = 3.1 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +2 Query: 113 EPRRHGR-LPGAPARERGFGVASSHRRAKSWRRPPLLGAPR--NRQTGPRVPT*TCRFRG 283 EPR R LP A + G A S ++ RP + A R NR +G R R Sbjct: 13 EPRSGSRRLPKAEGDKSGSAGAPSKNSSRLGGRPCMCTAGRRPNRASGRRR-------RS 65 Query: 284 CVSRVTWPMLC 316 C TWP LC Sbjct: 66 CSPAPTWPPLC 76
>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)| (TRF1-interacting ankyrin-related ADP-ribose polymerase) Length = 1327 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -1 Query: 316 AKHRPSHPTDTASESAGSRRNSGASLAISXXXXXXXXXXRLGPTVRGRYT-EPALSG 149 + + PS + S S+ S + G+SLA S LGP G T PA+SG Sbjct: 125 SNNSPSSSSSPTSSSSSSPSSPGSSLAESPEAAGVSSTAPLGPGAAGPGTGVPAVSG 181
>QUEA_GEOMG (Q39XD1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 343 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -2 Query: 342 IDXVRAEQPQ-SIGQVTRLTQPLNLQVHVGTRGPVWRFLGAPRRGGRLQDLARR 184 +D ++ E + S ++TRL +P +L V TR RF G GGR++ R Sbjct: 31 VDRLKGEVGEVSFREITRLFRPGDLLVVNDTRVIPARFFGVKESGGRVEVFLER 84
>CXA3_BOVIN (P41987) Gap junction alpha-3 protein (Connexin-44) (Cx44)| Length = 406 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/50 (30%), Positives = 19/50 (38%) Frame = +2 Query: 113 EPRRHGRLPGAPARERGFGVASSHRRAKSWRRPPLLGAPRNRQTGPRVPT 262 EP LPG P G G RA++W +R+ P PT Sbjct: 289 EPPPPAALPGTPGTPGGGGNQGLRARAQNWANREAEPQTSSRKASPPAPT 338
>B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%) Frame = +1 Query: 205 AAASPRGTEKSPNWPPSSDVNLQIQRLCQSGDLAD------------ALRLLGSDGVDD 345 A AS TEKS W PS+ +L+ +RLC L + ++LGS +DD Sbjct: 210 ARASRISTEKSRPWSPSASYDLR-ERLCPGSALGNPGPEQRVPTDEAEAQMLGSADLDD 267
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%) Frame = +1 Query: 205 AAASPRGTEKSPNWPPSSDVNLQIQRLCQSGDLAD------------ALRLLGSDGVDD 345 A AS TEKS W PS+ +L+ +RLC L + ++LGS +DD Sbjct: 210 ARASRISTEKSRPWSPSASYDLR-ERLCPGSALGNPGPEQRVPTDEAEAQMLGSADLDD 267
>DPOLN_MOUSE (Q7TQ07) DNA polymerase nu (EC 2.7.7.7)| Length = 864 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +1 Query: 142 STSQRARVRCSVLAPSGQVLEAAASPRGTEKSPNWPPSSDVNLQIQRLCQ---SGDLADA 312 S+ +R + CS S + + A + T+ + +WP S D +RLC GDLA A Sbjct: 152 SSLKRKYITCS--KSSEKASKHTALEKDTDGTESWPNSRDTRALGERLCDVRYLGDLAKA 209
>TALA_POVMA (P03073) Large T antigen| Length = 785 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 304 PSHPTDTASESAGSRRN 254 PS PTDT + +AG RRN Sbjct: 154 PSSPTDTPAHTAGRRRN 170
>DPO4_HALSA (Q9HQT4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 411 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 8/41 (19%) Frame = +2 Query: 131 RLPGAPARERGFGV--------ASSHRRAKSWRRPPLLGAP 229 RLPGAPARE V AS RR R P L GAP Sbjct: 6 RLPGAPAREERIVVHVDMDCFYASCERR----REPALRGAP 42
>TALA_POVM3 (P03074) Large T antigen| Length = 782 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 304 PSHPTDTASESAGSRRN 254 PS PTDT + +AG RRN Sbjct: 154 PSSPTDTPAHTAGRRRN 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,075,611 Number of Sequences: 219361 Number of extensions: 804620 Number of successful extensions: 2730 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2730 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
