ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 5e-25 Identities = 250/313 (79%) Strand = Plus / Minus Query: 68 ctcccatggcgacgcccccagccgcctccatttccagccacctccgagccccgccgccat 127 |||||||||||||||| ||| | ||||| |||||||||||||||||||||| || |||| Sbjct: 5766907 ctcccatggcgacgcctccactcacctccgtttccagccacctccgagcccctcctccat 5766848 Query: 128 ggccgcctcccaggagcaccagccagagagcgcgggttcggtgtagcgtcctcgcaccgt 187 |||||||||||| || || ||||| ||| | ||||| |||| ||||||||| ||| Sbjct: 5766847 ggccgcctcccaagaacagcagcccaagaacaagggttaggtgcgacgtcctcgcggcgt 5766788 Query: 188 cgggccaagtcttggaggcggccgcctctcctaggggcaccgagaaatcgccaaactggc 247 | || || || ||||||||||| | |||| |||||| || |||| |||| | || Sbjct: 5766787 ccggtcatatcctggaggcggcctctgctccgaggggcgccaagaattcgcggagtcggg 5766728 Query: 248 ccccgagttccgacgtgaacctgcagattcagaggctgtgtcagtcgggtgacttggccg 307 | ||||| |||| ||| || |||||||| ||||||| |||| | ||||||| || | | Sbjct: 5766727 caccgagaaccgatgtggacgtgcagattgagaggctctgtcgggcgggtgagttagagg 5766668 Query: 308 atgctttgcggttgctcggctcggacggngtcgatgaccggagctacggcgccgtcctcc 367 | || ||| |||||||||||||||| || ||||| | ||||||||||||||| ||| ||| Sbjct: 5766667 aggcgttgaggttgctcggctcggatggcgtcgacgcccggagctacggcgcggtcgtcc 5766608 Query: 368 ggctctgctcgga 380 |||||||||||| Sbjct: 5766607 agctctgctcgga 5766595
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 123 bits (62), Expect = 5e-25 Identities = 250/313 (79%) Strand = Plus / Minus Query: 68 ctcccatggcgacgcccccagccgcctccatttccagccacctccgagccccgccgccat 127 |||||||||||||||| ||| | ||||| |||||||||||||||||||||| || |||| Sbjct: 91609 ctcccatggcgacgcctccactcacctccgtttccagccacctccgagcccctcctccat 91550 Query: 128 ggccgcctcccaggagcaccagccagagagcgcgggttcggtgtagcgtcctcgcaccgt 187 |||||||||||| || || ||||| ||| | ||||| |||| ||||||||| ||| Sbjct: 91549 ggccgcctcccaagaacagcagcccaagaacaagggttaggtgcgacgtcctcgcggcgt 91490 Query: 188 cgggccaagtcttggaggcggccgcctctcctaggggcaccgagaaatcgccaaactggc 247 | || || || ||||||||||| | |||| |||||| || |||| |||| | || Sbjct: 91489 ccggtcatatcctggaggcggcctctgctccgaggggcgccaagaattcgcggagtcggg 91430 Query: 248 ccccgagttccgacgtgaacctgcagattcagaggctgtgtcagtcgggtgacttggccg 307 | ||||| |||| ||| || |||||||| ||||||| |||| | ||||||| || | | Sbjct: 91429 caccgagaaccgatgtggacgtgcagattgagaggctctgtcgggcgggtgagttagagg 91370 Query: 308 atgctttgcggttgctcggctcggacggngtcgatgaccggagctacggcgccgtcctcc 367 | || ||| |||||||||||||||| || ||||| | ||||||||||||||| ||| ||| Sbjct: 91369 aggcgttgaggttgctcggctcggatggcgtcgacgcccggagctacggcgcggtcgtcc 91310 Query: 368 ggctctgctcgga 380 |||||||||||| Sbjct: 91309 agctctgctcgga 91297
>ref|NM_188339.1| Oryza sativa (japonica cultivar-group), Ozsa8090 predicted mRNA Length = 3249 Score = 113 bits (57), Expect = 4e-22 Identities = 245/308 (79%) Strand = Plus / Plus Query: 73 atggcgacgcccccagccgcctccatttccagccacctccgagccccgccgccatggccg 132 ||||||||||| ||| | ||||| |||||||||||||||||||||| || ||||||||| Sbjct: 1 atggcgacgcctccactcacctccgtttccagccacctccgagcccctcctccatggccg 60 Query: 133 cctcccaggagcaccagccagagagcgcgggttcggtgtagcgtcctcgcaccgtcgggc 192 ||||||| || || ||||| ||| | ||||| |||| ||||||||| |||| || Sbjct: 61 cctcccaagaacagcagcccaagaacaagggttaggtgcgacgtcctcgcggcgtccggt 120 Query: 193 caagtcttggaggcggccgcctctcctaggggcaccgagaaatcgccaaactggcccccg 252 || || ||||||||||| | |||| |||||| || |||| |||| | || | ||| Sbjct: 121 catatcctggaggcggcctctgctccgaggggcgccaagaattcgcggagtcgggcaccg 180 Query: 253 agttccgacgtgaacctgcagattcagaggctgtgtcagtcgggtgacttggccgatgct 312 || |||| ||| || |||||||| ||||||| |||| | ||||||| || | || || Sbjct: 181 agaaccgatgtggacgtgcagattgagaggctctgtcgggcgggtgagttagaggaggcg 240 Query: 313 ttgcggttgctcggctcggacggngtcgatgaccggagctacggcgccgtcctccggctc 372 ||| |||||||||||||||| || ||||| | ||||||||||||||| ||| ||| |||| Sbjct: 241 ttgaggttgctcggctcggatggcgtcgacgcccggagctacggcgcggtcgtccagctc 300 Query: 373 tgctcgga 380 |||||||| Sbjct: 301 tgctcgga 308
>ref|XM_515675.1| PREDICTED: Pan troglodytes similar to esophageal cancer related gene 4 protein (LOC459473), mRNA Length = 959 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||||||||||| Sbjct: 58 gccccgccgccatggccgcctccc 81
>ref|XM_422007.1| PREDICTED: Gallus gallus similar to LOC129881 protein (LOC424161), mRNA Length = 3873 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 111 ccgagccccgccgccatggccg 132 |||||||||||||||||||||| Sbjct: 425 ccgagccccgccgccatggccg 404
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 ccccgccgccatggccgcctcc 137 |||||||||||||||||||||| Sbjct: 12364771 ccccgccgccatggccgcctcc 12364792
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 ccccgccgccatggccgcctcc 137 |||||||||||||||||||||| Sbjct: 44908 ccccgccgccatggccgcctcc 44929
>gb|BT017383.1| Zea mays clone EL01N0326E10.c mRNA sequence Length = 1067 Score = 42.1 bits (21), Expect = 1.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 252 gagttccgacgtgaacctgcagattcagaggctgtgtcagtcgggtgac 300 |||||||||||||||||||| || ||| | || |||||| |||||||| Sbjct: 587 gagttccgacgtgaacctgcgaatccagcgcctctgtcaggcgggtgac 635
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 ccccgccgccatggccgcctcccag 140 |||||||||||||| |||||||||| Sbjct: 161888 ccccgccgccatggacgcctcccag 161864
>gb|BC081015.1| Xenopus laevis MGC81601 protein, mRNA (cDNA clone MGC:81601 IMAGE:6863636), complete cds Length = 3708 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 tgaacctgcagattcagaggc 283 ||||||||||||||||||||| Sbjct: 688 tgaacctgcagattcagaggc 708
>ref|XM_967479.1| PREDICTED: Tribolium castaneum similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) (LOC661314), mRNA Length = 2469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctccc 138 ||||||||||||||||||||| Sbjct: 1288 ccgccgccatggccgcctccc 1268
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 gagccccgccgccatggccgc 133 ||||||||||||||||||||| Sbjct: 4815566 gagccccgccgccatggccgc 4815546 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 gccgccatggccgcctcccag 140 ||||||||||||||||||||| Sbjct: 73671 gccgccatggccgcctcccag 73651 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gccccgccgccatggccgcc 134 |||||||||||||||||||| Sbjct: 754213 gccccgccgccatggccgcc 754194
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 ccccgccgccatggccgcctcccag 140 |||||||||||||| |||||||||| Sbjct: 644489 ccccgccgccatggacgcctcccag 644465 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cccgccgccatggccgcctc 136 |||||||||||||||||||| Sbjct: 20581622 cccgccgccatggccgcctc 20581641
>ref|NM_032411.1| Homo sapiens esophageal cancer related gene 4 protein (ECRG4), mRNA Length = 772 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||| ||||||| Sbjct: 98 gccccgccgccatggctgcctccc 121
>gb|BT016602.1| Zea mays clone Contig435 mRNA sequence Length = 1376 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 31 ccgccgccatggccgcctcc 50
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cccgccgccatggccgcctc 136 |||||||||||||||||||| Sbjct: 3662 cccgccgccatggccgcctc 3681
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cccgccgccatggccgcctc 136 |||||||||||||||||||| Sbjct: 125101 cccgccgccatggccgcctc 125120
>gb|AY358601.1| Homo sapiens clone DNA73742 ECRG4 (UNQ761) mRNA, complete cds Length = 742 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||| ||||||| Sbjct: 59 gccccgccgccatggctgcctccc 82
>gb|BC021742.1| Homo sapiens esophageal cancer related gene 4 protein, mRNA (cDNA clone MGC:33676 IMAGE:5260075), complete cds Length = 800 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||| ||||||| Sbjct: 102 gccccgccgccatggctgcctccc 125
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gcctcccaggagcaccagcc 151 |||||||||||||||||||| Sbjct: 4786190 gcctcccaggagcaccagcc 4786171
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcccagg 141 ||||||||||||||||| |||||| Sbjct: 1126358 ccgccgccatggccgccgcccagg 1126335
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 16963755 ccgccgccatggccgcctcc 16963736
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 14303427 ccgccgccatggccgcctcc 14303408
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccatggccgcctccc 138 |||||||||||||||||||| Sbjct: 11450269 cgccgccatggccgcctccc 11450250
>gb|AF325503.1|AF325503 Homo sapiens esophageal cancer related gene 4 protein (ECRG4) mRNA, complete cds Length = 772 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||| ||||||| Sbjct: 98 gccccgccgccatggctgcctccc 121
>gb|AC018878.8| Homo sapiens BAC clone RP11-297N12 from 2, complete sequence Length = 170801 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gccccgccgccatggccgcctccc 138 |||||||||||||||| ||||||| Sbjct: 36538 gccccgccgccatggctgcctccc 36561
>emb|BX932236.1| Gallus gallus finished cDNA, clone ChEST361i16 Length = 957 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctccgagccccgccgccatg 128 |||||||||||||||||||| Sbjct: 49 ctccgagccccgccgccatg 68
>emb|BX931800.1| Gallus gallus finished cDNA, clone ChEST804o11 Length = 970 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctccgagccccgccgccatg 128 |||||||||||||||||||| Sbjct: 56 ctccgagccccgccgccatg 75
>emb|BX930388.1| Gallus gallus finished cDNA, clone ChEST597o13 Length = 951 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctccgagccccgccgccatg 128 |||||||||||||||||||| Sbjct: 43 ctccgagccccgccgccatg 62
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 2482326 ccgccgccatggccgcctcc 2482345
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cgagccccgccgccatggcc 131 |||||||||||||||||||| Sbjct: 883202 cgagccccgccgccatggcc 883221
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccatggccgcctccc 138 |||||||||||||||||||| Sbjct: 13927 cgccgccatggccgcctccc 13908
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccatggccgcctccc 138 |||||||||||||||||||| Sbjct: 59789 cgccgccatggccgcctccc 59770
>dbj|AK111886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068K11, full insert sequence Length = 2811 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cccgccgccatggccgcctc 136 |||||||||||||||||||| Sbjct: 100 cccgccgccatggccgcctc 81
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 14257705 ccgccgccatggccgcctcc 14257686
>emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06, complete sequence Length = 100589 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 87580 ccgccgccatggccgcctcc 87561
>emb|AL731749.3|CNS08C7Y Oryza sativa chromosome 12, . BAC OJ1312_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141067 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 99045 ccgccgccatggccgcctcc 99026
>emb|AL732645.4|CNS08C9K Oryza sativa chromosome 12, . BAC OSJNBb0090H23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 10627 ccgccgccatggccgcctcc 10608
>emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0066J23, complete sequence Length = 156934 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgccgccatggccgcctcc 137 |||||||||||||||||||| Sbjct: 19011 ccgccgccatggccgcctcc 18992
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cacctccgagccccgccgcc 125 |||||||||||||||||||| Sbjct: 2091236 cacctccgagccccgccgcc 2091255
>gb|U10016.1|TRU10016 Trichoderma reesei QM9414 protein kinase C (pkc1) gene, complete cds Length = 5131 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ccgccgccatggccgcctcccagg 141 ||||||||||||||||| |||||| Sbjct: 2999 ccgccgccatggccgccgcccagg 3022
>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162691 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acctgcagattcagaggctg 285 |||||||||||||||||||| Sbjct: 103581 acctgcagattcagaggctg 103562
>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 231740 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccagaaagctatccactg 20 |||||||||||||||||||| Sbjct: 166735 atccagaaagctatccactg 166754
>dbj|AB063017.1| Macaca fascicularis brain cDNA clone:QmoA-11335, full insert sequence Length = 1883 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 tcctccggctctgctcggagatga 385 ||||||||||||| |||||||||| Sbjct: 351 tcctccggctctggtcggagatga 328
>dbj|AB056334.1| Macaca fascicularis brain cDNA, clone:QflA-13525 Length = 1793 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 tcctccggctctgctcggagatga 385 ||||||||||||| |||||||||| Sbjct: 270 tcctccggctctggtcggagatga 247 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,424,003 Number of Sequences: 3902068 Number of extensions: 2424003 Number of successful extensions: 48728 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47995 Number of HSP's gapped (non-prelim): 733 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
