Clone Name | bastl55e04 |
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Clone Library Name | barley_pub |
>OGFR_RAT (Q9QXY4) Opioid growth factor receptor (OGFr) (Zeta-type opioid| receptor) Length = 580 Score = 32.7 bits (73), Expect = 0.53 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 184 QPLTGTGRRSGERGASDPGEEPPAGARTVGCG 89 QPLTG G+ + G+ DP +E RT G G Sbjct: 292 QPLTGPGQADKDEGSRDPSQEAGTQGRTCGSG 323
>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1048 Score = 32.3 bits (72), Expect = 0.69 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -3 Query: 181 PLTGTGRRSGERGASDPGEEPPAGARTVGCGERPVPSXXXXXXLPYGWE 35 P+ G +G AS+PG P G R G GE+P P GW+ Sbjct: 233 PVKANGLPAGPEPASEPGSPYPEGPRVPGGGEQP--------AQPNGWQ 273
>FIBA1_PETMA (P02674) Fibrinogen alpha-1 chain precursor [Contains:| Fibrinopeptide A] (Fragment) Length = 966 Score = 32.3 bits (72), Expect = 0.69 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Frame = -2 Query: 392 P*GTAAAHCGG-DSRPALGRSGAYRVGQGQEERKVVQDGGEEKGKCSCRGVVARDAGGSD 216 P GT H GG + +L G+ G G + G + G S G A + G S Sbjct: 355 PLGTGVTHDGGVRTSGSLMDGGSSDTGTGGVSKTTTFTGSAQGGSWSTGGSTATNTG-SA 413 Query: 215 RPPPWSTGGNSAPD 174 + WSTGG + P+ Sbjct: 414 QGGSWSTGGRTEPN 427
>HMGA2_HUMAN (P52926) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 109 Score = 32.0 bits (71), Expect = 0.90 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -1 Query: 162 GDPASAAPQIRGRNRPREQE 103 G PA+ APQ RGR RPR+Q+ Sbjct: 17 GQPAAPAPQKRGRGRPRKQQ 36
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 32.0 bits (71), Expect = 0.90 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = +3 Query: 54 ARAAAAEGTGRSPQP--TVLAPAGGSSPGS 137 A AAA G GRSP+P T AP+GG+ GS Sbjct: 39 AALAAAAGGGRSPEPALTPAAPSGGNGSGS 68
>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1265 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = -2 Query: 365 GGDSRPALGRSGAYRVGQGQEERKVVQDGGEEKGKCSCRGVVARDAGGSDRPPPWSTGGN 186 GGD A G ++R +ER GG++ G+ S R GGS R PP GG Sbjct: 101 GGDDPLAGGFGFSFRSRSAWQER-----GGDDCGRGSRRRRRGAAGGGSSRAPPAGGGGG 155 Query: 185 SA 180 A Sbjct: 156 PA 157
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 31.2 bits (69), Expect = 1.5 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -1 Query: 321 GRPGARGKKGSTRWWRGEGKV*LPGSGGTRCWRLGQAPAVEHGRELSP*LEPGGDPASAA 142 G PGA G++G + + G +PG G R G PA G EPG D Sbjct: 476 GLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGVA----GEPGRDGTPGG 531 Query: 141 PQIRG 127 P IRG Sbjct: 532 PGIRG 536
>GPH_CAUCR (Q9A5Z2) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 237 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +1 Query: 181 AEFPPVLHGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSCPWP 318 A P VL G +E P +H P +C T L+SCP P Sbjct: 188 AGVPGVLVSFGYTEEPVETLGADLVIHSFLDVPKACITLLTSCPAP 233
>HMGA2_MOUSE (P52927) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 108 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -1 Query: 162 GDPASAAPQIRGRNRPREQE 103 G PA+ PQ RGR RPR+Q+ Sbjct: 17 GQPAAPVPQKRGRGRPRKQQ 36
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.4 bits (67), Expect = 2.6 Identities = 26/85 (30%), Positives = 36/85 (42%) Frame = -2 Query: 431 EAEQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDGGEEKGKCSC 252 +AEQ+ E G + AAA G A S VG Q K +QDG E G Sbjct: 26 KAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGG 85 Query: 251 RGVVARDAGGSDRPPPWSTGGNSAP 177 G + G++ P ++ GN+ P Sbjct: 86 GGAGSGGGPGAE-PDLKNSNGNAGP 109
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 30.0 bits (66), Expect = 3.4 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = +1 Query: 187 FPPVLHGGGLSEPPASRATTPRQLHFPFSSPPSCTTF-LSSCPWPTL*APLRPNAGLESP 363 F P+ H L PP + T P L P PP TF L PT PL P L P Sbjct: 1748 FAPLPHPP-LPRPPIAFTTFPLPLSPPNPPPPQLVTFSLPISTPPTSSLPLPPPLSLPPP 1806 Query: 364 PQ 369 P+ Sbjct: 1807 PR 1808
>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1173 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = -3 Query: 166 GRRSGERGASDPGEEPPAGARTVGCGERPVPSXXXXXXLPYGWE 35 G SG AS+PG P G R G GE P P GW+ Sbjct: 238 GLPSGPETASEPGSPYPDGPRVPGGGEHP--------AQPNGWQ 273
>YNIF_AZOBR (P25316) Hypothetical 12.3 kDa protein in nifK-nifY intergenic| region Length = 118 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Frame = -2 Query: 362 GDSRPALGRSGAYRVGQGQEERKVVQDGGEEKGK--CSCRGVVARDAGGSDRPPPWSTGG 189 G SRPA G G G+ C C+ + R A DRPP W+T Sbjct: 53 GSSRPAKGSRVTACQGAGRPSASSSSSTPSRARSRCCECQEIRGRCAVFDDRPPDWATSA 112 Query: 188 NSAP 177 SAP Sbjct: 113 -SAP 115
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +1 Query: 193 PVLHGGGLSEPPA-SRATTPRQLHFPFSSPPSCTTFLSSCPWPTL*APLRPNAGLESPP 366 PV G +EPP A+ P P SSPP ++ L P P P+ P A PP Sbjct: 1516 PVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPV-PEAPSSGPP 1573
>VG38_BPAR1 (Q9G0B4) Receptor recognizing protein (Protein Gp38)| Length = 259 Score = 29.3 bits (64), Expect = 5.8 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Frame = -1 Query: 321 GRPGARGKKGSTRWWRGEGKV*LPGSG---GTRCWRLGQAPAVEHGRELSP*LEPGGDPA 151 GRP G RW G + PG+G GTR + G + G+ +P P Sbjct: 176 GRPFGLGGNNGARWPGGNASLTSPGAGGNTGTRYYAGGGGEVGQPGQYANPGASYSTPPT 235 Query: 150 SAAPQIRGRNRPREQELWAV 91 S + G + P Q + A+ Sbjct: 236 SPGAAVAG-SAPTWQNVGAI 254
>F100A_HUMAN (Q8TB05) Protein FAM100A| Length = 177 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 202 HGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSCPWPTL*AP 333 H GG P A+ AT+P HFP ++ T+ ++ WPT +P Sbjct: 92 HSGGSGSPMAATATSPPP-HFPHAA----TSSSAASSWPTAASP 130
>VMSA_HBVA4 (Q05496) Major surface antigen precursor| Length = 399 Score = 29.3 bits (64), Expect = 5.8 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +1 Query: 208 GGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSC 309 GGL P + +P H P S PP+C + C Sbjct: 216 GGLPGCPGQNSQSPTSNHLPTSCPPTCPGYRWMC 249
>RL4_LACJO (P61064) 50S ribosomal protein L4| Length = 205 Score = 28.9 bits (63), Expect = 7.6 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -3 Query: 478 AVQ*VEAARQGGCAATRQNSGTARRKEGSLRAQRRRTAGETLDP 347 AV+ A R GG RQ GT R ++GS+RA + R G P Sbjct: 50 AVKNRSAVRGGGKKPWRQK-GTGRARQGSIRAPQWRGGGTVFGP 92
>DYH1A_CHLRE (Q9SMH3) Dynein-1-alpha heavy chain, flagellar inner arm I1 complex| (1-alpha DHC) (Dynein-1, subspecies f) Length = 4625 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 54 ARAAAAEGTGRSPQPTVLAPAGGSSPGS 137 A AAAAE G +P+ APA G++ G+ Sbjct: 113 APAAAAEANGANPEDEAAAPADGAADGA 140
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 28.9 bits (63), Expect = 7.6 Identities = 21/65 (32%), Positives = 27/65 (41%) Frame = -1 Query: 321 GRPGARGKKGSTRWWRGEGKV*LPGSGGTRCWRLGQAPAVEHGRELSP*LEPGGDPASAA 142 G PGA G++G+ + G +PG G R PA G EPG D Sbjct: 477 GLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAA----GEPGRDGVPGG 532 Query: 141 PQIRG 127 P +RG Sbjct: 533 PGMRG 537
>Y2645_MYCTU (P71944) Hypothetical protein Rv2645/MT2723| Length = 143 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 284 DGGEEKGKCSCRGVVARDAGGSDRPPPWSTGGNSAPDW 171 D + G+C+C G D G + PPPW G + P W Sbjct: 15 DTNGDPGRCAC-GQQLADVGPATPPPPWCEPG-TEPIW 50
>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) Length = 1706 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = +1 Query: 238 ATTPRQLHFPFSSPPSCTTFLSSCPWPTL*APLRPNAGLESPPQCAAAVP 387 A +P ++ P SSPP T LSS P L P P++ PP A P Sbjct: 929 AESPPEVVGP-SSPPLQTASLSSGQLPPLLTPTEPSSPPPCPPVLTVATP 977
>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)| Length = 367 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = +1 Query: 169 FQSGAEFPPVLHGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSC 309 F SG PP GGL P + T R P SS SC++ SSC Sbjct: 238 FPSGHHQPP----GGLESPLLLDSPTSRTPPPPSSSASSCSSSASSC 280
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 28.9 bits (63), Expect = 7.6 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Frame = -2 Query: 431 EAEQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDGGE---EKGK 261 +A + + + R+ AAA G R S Q E+RK++Q K Sbjct: 359 QAAAQQQQQQQREQEAAAAAQRNGAGRATTPGSSMLATHQDPEKRKLIQQQLVLLLHAHK 418 Query: 260 CSCRGVVARDAGGSDRPPP 204 CS R RD ++PPP Sbjct: 419 CSQREKENRDFAAKNQPPP 437
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 25.4 bits (54), Expect(2) = 9.8 Identities = 24/81 (29%), Positives = 32/81 (39%) Frame = -2 Query: 431 EAEQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDGGEEKGKCSC 252 + EQ A G +P AA GG+ +PA G G + E+ GGE+ + Sbjct: 96 QPEQPAAGAGGEQP----AAGAGGE-QPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAG 150 Query: 251 RGVVARDAGGSDRPPPWSTGG 189 A AGG P GG Sbjct: 151 GEQPAAGAGGEQ--PAAGAGG 169 Score = 21.6 bits (44), Expect(2) = 9.8 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Frame = -3 Query: 184 QPLTGTGRR---SGERG----ASDPGEEPPAGARTVGCGERP 80 QP G G +G RG A GE+P AGA GE+P Sbjct: 171 QPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAG----GEQP 208
>EDN2_MACFA (Q28470) Endothelin-2 (ET-2) (Preproendothelin-2) (PPET2)| (Fragment) Length = 79 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +1 Query: 211 GLSEPPASRATT-PRQLHFPFSSPPSCTTFLSSCPW 315 GL PP R + PR+ + PSC TF PW Sbjct: 8 GLGNPPRRRRRSLPRRCQCSSARDPSCATFCLRRPW 43
>UVRC_CORJK (Q4JVI8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 690 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -2 Query: 479 RSAVSGGSTAGRLCSDEAEQRDGEAEGRKP 390 +SAV G AG L E E D AEG P Sbjct: 509 KSAVPAGDDAGDLLEGETELEDNSAEGTDP 538
>RL4_LACPL (Q88XY5) 50S ribosomal protein L4| Length = 207 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 460 AARQGGCAATRQNSGTARRKEGSLRAQRRRTAGETLDP 347 +AR+GG + GT R ++GS+R+ + R G P Sbjct: 55 SARRGGGRKPWRQKGTGRARQGSIRSPQWRKGGIVFGP 92
>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)| Length = 427 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = +1 Query: 190 PPVLHGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSCPWPTL*APLRPNAGLESPP 366 PPV H S PP + P + H+ + SPP S P P + + +SPP Sbjct: 39 PPVKH---YSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPP 94
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = -2 Query: 425 EQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDG 279 EQ + P GT A G P+L A V Q E KVVQ+G Sbjct: 86 EQAAAQPHTEIPEGTTAEEAGIGDTPSLEDEAAGHVTQEPESGKVVQEG 134
>F100A_MOUSE (Q6P3B2) Protein FAM100A| Length = 176 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +1 Query: 202 HGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSCPWPTL*APLRPNAGLESPPQ 369 HGGG S P + + T HFP + T ++ WPT +P P + PQ Sbjct: 91 HGGGGSSSPMATSATSPPPHFPHA-----TGSFATPSWPTAASP--PGGPQQHQPQ 139
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 28.5 bits (62), Expect = 9.9 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1 Query: 178 GAEFPPVL-HGGGLSEPPASRATTPRQLHFPFSSPPSCTTFLSSCPWPTL-*APLRPNAG 351 G+ F PVL H + P + ++ P S PP+ SC WPT +PL P+ Sbjct: 330 GSAFHPVLPHYATVPRPLNKNSRPSSPVNTPSSQPPAA----KSCAWPTSNFSPLPPSPP 385 Query: 352 --LESPP 366 + SPP Sbjct: 386 IMISSPP 392
>CA077_HUMAN (Q9Y3Y2) Protein C1orf77| Length = 248 Score = 28.5 bits (62), Expect = 9.9 Identities = 24/72 (33%), Positives = 30/72 (41%) Frame = -2 Query: 449 GRLCSDEAEQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDGGEE 270 GR + R G GR G GG R A+GR G G+G R GG Sbjct: 142 GRAVAPRMGLRRGGVRGRGGPGR-----GGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196 Query: 269 KGKCSCRGVVAR 234 +G+ RG +AR Sbjct: 197 RGRGRGRGALAR 208
>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog| Length = 248 Score = 28.5 bits (62), Expect = 9.9 Identities = 24/72 (33%), Positives = 30/72 (41%) Frame = -2 Query: 449 GRLCSDEAEQRDGEAEGRKP*GTAAAHCGGDSRPALGRSGAYRVGQGQEERKVVQDGGEE 270 GR + R G GR G GG R A+GR G G+G R GG Sbjct: 142 GRAVAPRMGLRRGGVRGRGGPGR-----GGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196 Query: 269 KGKCSCRGVVAR 234 +G+ RG +AR Sbjct: 197 RGRGRGRGALAR 208
>OGFR_MOUSE (Q99PG2) Opioid growth factor receptor (OGFr) (Zeta-type opioid| receptor) Length = 633 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 184 QPLTGTGRRSGERGASDPGEEPPAGARTVGCG 89 +PL G G+ + G DP +E RT G G Sbjct: 292 RPLMGLGQADKDEGPGDPSQEAGTQGRTCGSG 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,550,536 Number of Sequences: 219361 Number of extensions: 1504553 Number of successful extensions: 5530 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5499 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)