ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VILI3_ARATH (O81645) Villin-3 84 2e-16
2VILI2_ARATH (O81644) Villin-2 83 3e-16
3VILI4_ARATH (O65570) Villin-4 79 4e-15
4GELS_DROME (Q07171) Gelsolin precursor 71 1e-12
5GELS_HALRO (O61270) Gelsolin, cytoplasmic (Actin-depolymerizing ... 65 8e-11
6GELS_HOMAM (Q27319) Gelsolin, cytoplasmic (Actin-depolymerizing ... 63 4e-10
7SEVE_DICDI (P10733) Severin 62 5e-10
8VILI1_ARATH (O81643) Villin-1 57 2e-08
9ADSV_BOVIN (Q28046) Adseverin (Scinderin) (SC) 54 1e-07
10GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing fac... 54 2e-07
11GELS_PIG (P20305) Gelsolin precursor (Actin-depolymerizing facto... 54 2e-07
12GELS_CHICK (O93510) Gelsolin precursor (Actin-depolymerizing fac... 54 2e-07
13ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein) 53 3e-07
14GELS_HORSE (Q28372) Gelsolin (Actin-depolymerizing factor) (ADF)... 52 7e-07
15GELS_HUMAN (P06396) Gelsolin precursor (Actin-depolymerizing fac... 52 7e-07
16ADSV_HUMAN (Q9Y6U3) Adseverin (Scinderin) 50 4e-06
17CAPG_HUMAN (P40121) Macrophage capping protein (Actin-regulatory... 47 2e-05
18FLII_MOUSE (Q9JJ28) Protein flightless-1 homolog 47 2e-05
19FLII_HUMAN (Q13045) Protein flightless-1 homolog 47 2e-05
20CAPG_MOUSE (P24452) Macrophage capping protein (Myc basic motif ... 47 3e-05
21VILI_CHICK (P02640) Villin-1 46 4e-05
22FLII_DROME (Q24020) Protein flightless-1 (Flightless-I) 45 9e-05
23GELS_XENLA (P14885) Gelsolin (Actin-depolymerizing factor) (ADF)... 44 3e-04
24AVIL_HUMAN (O75366) Advillin (p92) 43 3e-04
25VILI_MOUSE (Q62468) Villin-1 43 4e-04
26FLII_CAEEL (P34268) Protein flightless-1 homolog 42 7e-04
27VILI_HUMAN (P09327) Villin-1 42 7e-04
28VILD_DICDI (Q8WQ85) Villidin 40 0.002
29AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6) 40 0.004
30SEVE_ECHGR (Q24800) Severin 37 0.024
31SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250) 36 0.040
32SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250) 35 0.090
33PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ... 33 0.34
34VILL_HUMAN (O15195) Villin-like protein 33 0.45
35COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor 32 0.76
36COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment) 32 0.99
37GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) ... 31 1.3
38VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein) 31 1.3
39COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor 31 1.7
40QUAI_DROME (Q23989) Villin-like protein quail 31 1.7
41MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor (... 31 1.7
42NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4... 27 1.7
43VILL_MOUSE (Q91YD6) Villin-like protein (EF-6) 30 2.9
44UPPS_WOLSU (Q7M7V7) Undecaprenyl pyrophosphate synthetase (EC 2.... 30 3.8
45GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2... 30 3.8
46PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor t... 29 4.9
47FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FR... 29 6.4
48CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor 29 6.4
49SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 29 6.4
50SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 6.4
51MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc an... 29 6.4
52PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precur... 28 8.4
53IF2_COREF (Q8FPA7) Translation initiation factor IF-2 28 8.4
54SFTPD_HUMAN (P35247) Pulmonary surfactant-associated protein D p... 28 8.4
55EMID2_MOUSE (Q91VF6) Collagen alpha-1(XXVI) chain precursor (EMI... 28 8.4
56AF9_USTMA (Q4PFI5) Protein AF-9 homolog 28 8.4
57CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 28 8.4

>VILI3_ARATH (O81645) Villin-3|
          Length = 966

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = +2

Query: 305 KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           KV+DPAFQG GQK G EIWRIE+F+PV +PKS++GKFY GD+YIVLQTT
Sbjct: 6   KVLDPAFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTT 54



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 296 STP--KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           STP  + + P  +G G+   +E+W I+      L K   GK YSGD Y+VL T
Sbjct: 377 STPVNEDIPPLLEGGGK---LEVWYIDANSKTVLSKDHVGKLYSGDCYLVLYT 426



to top

>VILI2_ARATH (O81644) Villin-2|
          Length = 976

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 40/53 (75%), Positives = 47/53 (88%)
 Frame = +2

Query: 293 MSTPKVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           MST KV+DPAFQGAGQK G EIWRIE+F+ V +PKS++GKFY GD+YIVLQTT
Sbjct: 1   MST-KVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTT 52



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 311 VDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           + P  +  G+   +E+W +       LPK D GK YSGD Y+VL T
Sbjct: 382 IPPLLESGGK---LEVWYVNGKVKTPLPKEDIGKLYSGDCYLVLYT 424



to top

>VILI4_ARATH (O65570) Villin-4|
          Length = 974

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +2

Query: 311 VDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTTS 454
           +DPAFQGAGQK GIEIWRIE+F P  +PKS  GKF++GDSYIVL+TT+
Sbjct: 8   LDPAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTA 55



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYI 436
           +++WR+       L  +D+ KFYSGD Y+
Sbjct: 394 LQVWRVNGQAKTLLQAADHSKFYSGDCYV 422



to top

>GELS_DROME (Q07171) Gelsolin precursor|
          Length = 798

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = +2

Query: 233 AEPLLLFHHLQIEPW*SCFQMSTPKVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGK 412
           A P       +I+P     + +  +V+ P+F  AG+  G+EIWRIE+F+PV  PK++YGK
Sbjct: 33  ARPAFPVQSGEIQPSGQNSKQAARRVMHPSFANAGRTPGLEIWRIENFEPVIYPKTNYGK 92

Query: 413 FYSGDSYIVLQT 448
           FY+GDS+IVL T
Sbjct: 93  FYTGDSFIVLNT 104



to top

>GELS_HALRO (O61270) Gelsolin, cytoplasmic (Actin-depolymerizing factor) (ADF)|
           (Ascidian gelsolin)
          Length = 715

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 27/43 (62%), Positives = 39/43 (90%)
 Frame = +2

Query: 326 QGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTTS 454
           Q AG++ GI+IWRIEDF+ V +PK+++GKFY+GDSYI+L+TT+
Sbjct: 8   QKAGKETGIQIWRIEDFELVPVPKTNHGKFYTGDSYIILKTTA 50



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 353 EIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +IWR+   +   +PK  YG+FY GD YI++ T
Sbjct: 398 QIWRVASLRKEPVPKELYGQFYGGDCYIIMYT 429



to top

>GELS_HOMAM (Q27319) Gelsolin, cytoplasmic (Actin-depolymerizing factor) (ADF)|
          Length = 754

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = +2

Query: 317 PAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           PAF+GAG   G+ IWRIE+F+ V  PK  YG+FY GDSYIVL T
Sbjct: 3   PAFEGAGAVEGLTIWRIENFEVVPYPKEKYGQFYQGDSYIVLYT 46



to top

>SEVE_DICDI (P10733) Severin|
          Length = 362

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           ++G GQ  G++IWRIE+FK V +P+S YGKFY GDSYI+L T
Sbjct: 36  WKGVGQAPGLKIWRIENFKVVPVPESSYGKFYDGDSYIILHT 77



to top

>VILI1_ARATH (O81643) Villin-1|
          Length = 910

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 24/48 (50%), Positives = 37/48 (77%)
 Frame = +2

Query: 305 KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           K  D AFQG G K G+EIW + + + +++PKS +GKF+SG++Y+VL+T
Sbjct: 6   KDFDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRT 53



to top

>ADSV_BOVIN (Q28046) Adseverin (Scinderin) (SC)|
          Length = 715

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           F  AG++ G+++WRIE  + V +P+S YG FY GD+Y+VL TT
Sbjct: 10  FARAGKRAGLQVWRIEKLELVPVPESAYGNFYVGDAYLVLHTT 52



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           ++IWR+E+   V + ++ YG+FY GD YI+L T
Sbjct: 398 VQIWRVENNGRVEIDRNSYGEFYGGDCYIILYT 430



to top

>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin)
          Length = 780

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +2

Query: 296 STPKVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           ST  V  P F  AG++ G++IWR+E F  V +P + YG F++GD+Y++L+T
Sbjct: 48  STMVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKT 98



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G GQK   +IWRIE    V +  + YG+FY GDSYI+L
Sbjct: 441 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIIL 475



to top

>GELS_PIG (P20305) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin) (Fragment)
          Length = 772

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +2

Query: 296 STPKVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           ST  V  P F  AG++ G++IWR+E F  V +P + YG F++GD+Y++L+T
Sbjct: 40  STMVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKT 90



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G GQK   +IWRIE    V +  + YG+FY GDSYI+L
Sbjct: 433 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIIL 467



to top

>GELS_CHICK (O93510) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin) (Homogenin)
          Length = 778

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           F  AG++ G++IWRIE F  V +PK+ YG F++GDSY+VL T
Sbjct: 55  FSKAGKEPGLQIWRIEKFDLVPVPKNLYGDFFTGDSYLVLNT 96



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G+G+K   +IWRIE  + V +  + YG+FY GDSYI+L
Sbjct: 439 GSGKK---QIWRIEGSEKVPVDPATYGQFYGGDSYIIL 473



to top

>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)|
          Length = 715

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +2

Query: 317 PAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           P F  AGQ+ G+++WR+E  + V +P+  YG FY G+ Y+VL TT
Sbjct: 8   PEFARAGQQAGLQVWRVEKLELVPVPQGAYGDFYVGEPYLVLHTT 52



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 347 GIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           G+EIWR+E+   V +  S YG+FY GD YI+L T
Sbjct: 397 GVEIWRVENSGRVQIDPSSYGEFYGGDCYIILYT 430



to top

>GELS_HORSE (Q28372) Gelsolin (Actin-depolymerizing factor) (ADF) (Brevin)|
          Length = 730

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 34/47 (72%)
 Frame = +2

Query: 308 VVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           V  P F  AG++ G++IWR+E F  V +P + YG F++GD+Y++L+T
Sbjct: 2   VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKT 48



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G GQK   +IWR+E    V +  + YG+FY GDSYI+L
Sbjct: 391 GTGQK---QIWRVEGSNKVPVDPATYGQFYGGDSYIIL 425



to top

>GELS_HUMAN (P06396) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin) (AGEL)
          Length = 782

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 34/47 (72%)
 Frame = +2

Query: 308 VVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           V  P F  AG++ G++IWR+E F  V +P + YG F++GD+Y++L+T
Sbjct: 54  VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKT 100



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G GQK   +IWRIE    V +  + YG+FY GDSYI+L
Sbjct: 443 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIIL 477



to top

>ADSV_HUMAN (Q9Y6U3) Adseverin (Scinderin)|
          Length = 715

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           F  AG++ G+++WRIE  + V +P+S +G FY GD+Y+VL T
Sbjct: 10  FARAGKQAGLQVWRIEKLELVPVPQSAHGDFYVGDAYLVLHT 51



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +EIWR+E+   + + ++ YG+FY GD YI+L T
Sbjct: 398 VEIWRVENNGRIQVDQNSYGEFYGGDCYIILYT 430



to top

>CAPG_HUMAN (P40121) Macrophage capping protein (Actin-regulatory protein|
           CAP-G)
          Length = 348

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           F G+ Q  G+ +WR+E  KPV + + + G F+SGDSY+VL
Sbjct: 12  FPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVL 51



to top

>FLII_MOUSE (Q9JJ28) Protein flightless-1 homolog|
          Length = 1271

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +2

Query: 326 QGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +  GQ  G+ IW+IE+F PV + ++ +GKFY  D YIVL+T
Sbjct: 493 EDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKT 533



to top

>FLII_HUMAN (Q13045) Protein flightless-1 homolog|
          Length = 1269

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +2

Query: 326 QGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +  GQ  G+ IW+IE+F PV + ++ +GKFY  D YIVL+T
Sbjct: 493 EDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKT 533



to top

>CAPG_MOUSE (P24452) Macrophage capping protein (Myc basic motif homolog 1)|
           (Actin-capping protein GCAP39)
          Length = 352

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +2

Query: 323 FQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           F  + Q  G+ IWR+E  KPV + +  +G F+SGDSY+VL
Sbjct: 12  FPASVQDPGLHIWRVEKLKPVPIARESHGIFFSGDSYLVL 51



to top

>VILI_CHICK (P02640) Villin-1|
          Length = 826

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 347 GIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           GI+IWRIE+ + V +P   YG FY GD Y++L T
Sbjct: 18  GIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLST 51



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +2

Query: 305 KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           K+VD    G+G+    E+WR+E+ + V + K   G FY GD Y+VL T
Sbjct: 391 KMVD---DGSGEA---EVWRVENQELVPVEKRWLGHFYGGDCYLVLYT 432



to top

>FLII_DROME (Q24020) Protein flightless-1 (Flightless-I)|
          Length = 1256

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +2

Query: 335 GQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           GQ  G+ IW IE+F P  + +  +GKFY GD YIVL+T
Sbjct: 494 GQLPGLTIWEIENFLPNKIEEVVHGKFYEGDCYIVLKT 531



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           +E + +E+ K V LP+ + G+FY+G+ Y+ L
Sbjct: 894 MEAFVLENKKFVRLPEEELGRFYTGECYVFL 924



to top

>GELS_XENLA (P14885) Gelsolin (Actin-depolymerizing factor) (ADF) (Brevin)|
           (Fragment)
          Length = 417

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G+G+K   +IWRIE+ + V + +S YG+FY GDSYI+L
Sbjct: 79  GSGKK---QIWRIENCEKVPVLESHYGQFYGGDSYIIL 113



to top

>AVIL_HUMAN (O75366) Advillin (p92)|
          Length = 819

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 320 AFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           AF+      GI +WRIE  +   +P S +G FY GD Y++L T
Sbjct: 6   AFRAVDNDPGIIVWRIEKMELALVPVSAHGNFYEGDCYVILST 48



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +E+WRIE+ + V +    YG FY GD Y+VL T
Sbjct: 397 VEVWRIENLELVPVEYQWYGFFYGGDCYLVLYT 429



to top

>VILI_MOUSE (Q62468) Villin-1|
          Length = 826

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 347 GIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           GI+IWRIE  + V +P S +G F+ GD Y+VL
Sbjct: 17  GIQIWRIEAMQMVPVPSSTFGSFFDGDCYVVL 48



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +2

Query: 305 KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           K+VD    G+G+   +++WRIED + V +     G FY GD Y++L T
Sbjct: 390 KMVD---DGSGE---VQVWRIEDLELVPVESKWLGHFYGGDCYLLLYT 431



to top

>FLII_CAEEL (P34268) Protein flightless-1 homolog|
          Length = 1257

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +2

Query: 326 QGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           +  G   G+ +W IE+F P  + ++ +G+FY  D+Y+VL+TT
Sbjct: 502 EDVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTT 543



to top

>VILI_HUMAN (P09327) Villin-1|
          Length = 826

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 347 GIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G++IWRIE  + V +P S +G F+ GD YI+L
Sbjct: 17  GLQIWRIEAMQMVPVPSSTFGSFFDGDCYIIL 48



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +2

Query: 305 KVVDPAFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           K+VD    G+G+   +++WRIE+ + V +     G FY GD Y++L T
Sbjct: 390 KMVD---DGSGE---VQVWRIENLELVPVDSKWLGHFYGGDCYLLLYT 431



to top

>VILD_DICDI (Q8WQ85) Villidin|
          Length = 1704

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = +2

Query: 350  IEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
            +++W+IED++ +  P+  Y +F+S DSYIVL T
Sbjct: 1295 VKVWKIEDYEKIDHPQHLYSQFFSSDSYIVLYT 1327



to top

>AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6)|
          Length = 819

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 AFQGAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           AF+       I  WRIE  +   +P S +G FY GD YIVL T
Sbjct: 6   AFRAVSNDPRIITWRIEKMELALVPLSAHGNFYEGDCYIVLST 48



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 329 GAGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           G GQ   +E+WRIE+ + V +    +G FY GD Y+VL T
Sbjct: 393 GKGQ---VEVWRIENLELVPVEYQWHGFFYGGDCYLVLYT 429



to top

>SEVE_ECHGR (Q24800) Severin|
          Length = 374

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 IWRIEDFKPVALPKSDYGKFYSGDSYIVLQTT 451
           +WR+  F    +P  + G FY+GDSY++ + T
Sbjct: 52  VWRVNQFTLEPVPSDEIGNFYNGDSYVICKAT 83



to top

>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)|
          Length = 2214

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 344  VGIEIWRIEDFKPVALPKSDYGKFYSGDSYIV 439
            V +++W I +F    LPK   G+F+ GD+Y+V
Sbjct: 1752 VSVDVWHILEFDYSRLPKQSIGQFHEGDAYVV 1783



to top

>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)|
          Length = 2170

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 344  VGIEIWRIEDFKPVALPKSDYGKFYSGDSYIV 439
            V +++W I +F    LP+   G+F+ GD+Y+V
Sbjct: 1708 VSVDVWHILEFDYSRLPRQSIGQFHEGDAYVV 1739



to top

>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 240 GSAVQQGPLPGEGAPVGPPTKWGVPAP 160
           G   QQGP P +G P GPP + G P P
Sbjct: 77  GGQQQQGPPPPQGKPQGPPQQGGHPPP 103



to top

>VILL_HUMAN (O15195) Villin-like protein|
          Length = 856

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 335 GQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           G + G+ IW  E+ K V +P+  YG F+    Y++L
Sbjct: 9   GMQGGLHIWISENRKMVPVPEGAYGNFFEEHCYVIL 44



to top

>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 246  SNGS--AVQQGPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDP 124
            S GS  A   G +PG   P+GPP   G+P P      +GS  P
Sbjct: 1476 SQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGP 1518



to top

>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 482

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 222 GPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDP 124
           G +PG   P+GPP   G+P P      +GS  P
Sbjct: 164 GGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGP 196



to top

>GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
           cyclase 2E)
          Length = 1108

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 158 RGAGTP-HFVGGPTGAPSPGRGPCCTAEP 241
           R AGTP HF   P GAP+PG  P C  +P
Sbjct: 431 RSAGTPVHF---PRGAPAPGPDPSCWFDP 456



to top

>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 335 GQKVGIEIWRIEDFKPV-ALPKSDYGKFYSGDSYIVL 442
           G+++G+EIW+I D   +  +PK ++  F +  SY++L
Sbjct: 50  GKEIGLEIWKIIDDSTIQKVPKVNHSTFETNKSYLLL 86



to top

>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 222  GPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDP 124
            G +PG   P+GPP   G+P P+     +GS  P
Sbjct: 1488 GGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1520



to top

>QUAI_DROME (Q23989) Villin-like protein quail|
          Length = 887

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 311 VDPAFQG-AGQKVGIEIWRIEDFKPVALPKSDYGKFYSGDSYIV 439
           VD  F+  A   +   IW+I++ +  A+ +S YG FY   +YI+
Sbjct: 21  VDATFRKVAKHAITFAIWKIDEDRLEAVQRSHYGTFYDSCAYII 64



to top

>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 225 QGPLPGEGAPVGPPTKWGVPAPRA*IRRRGS 133
           + P+P E AP GP +  G P P A  R  GS
Sbjct: 740 EAPMPAEPAPPGPASPGGAPEPPAAARAGGS 770



to top

>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 26.9 bits (58), Expect(2) = 1.7
 Identities = 21/72 (29%), Positives = 25/72 (34%)
 Frame = +2

Query: 161  GAGTPHFVGGPTGAPSPGRGPCCTAEPLLLFHHLQIEPW*SCFQMSTPKVVDPAFQGAGQ 340
            GAG     GG  G       PCC A P     +L +EP       S     D    G   
Sbjct: 1075 GAGGAGGTGGAGGGAPAAPPPCCAAPPPC--PYLDLEP-------SPSDSEDSESLGGAS 1125

Query: 341  KVGIEIWRIEDF 376
              G++ W   DF
Sbjct: 1126 LGGLDPWWFADF 1137



 Score = 22.3 bits (46), Expect(2) = 1.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 3    FPFPSLPTHAGRTPPSPPHSRLPTAD 80
            FP P  P  A  T   PP  RL   D
Sbjct: 1027 FPSPPAPPAAAATAVGPPLCRLAFED 1052



to top

>VILL_MOUSE (Q91YD6) Villin-like protein (EF-6)|
          Length = 859

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVLQT 448
           +E+W I+D +   +    YG+  SG+ Y+VL T
Sbjct: 393 VEVWYIQDLQRQPVHPKYYGQLCSGNCYLVLYT 425



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 350 IEIWRIEDFKPVALPKSDYGKFYSGDSYIVL 442
           ++IW  E+ K + LP+  +G F+    Y+VL
Sbjct: 16  LQIWITENLKMLPLPERAHGNFFEECCYVVL 46



to top

>UPPS_WOLSU (Q7M7V7) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 228

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 448 RLQNYI*ISRIEFTIIRFWQCNWLKIFNAPYFYPNFLASPLESRIHHFRGR 296
           RL NY+            WQ ++ ++F  P  +P+F A  L  +I  F+ R
Sbjct: 182 RLSNYL-----------LWQSSYAELFFTPTLWPDFTAGELAIQIEEFKRR 221



to top

>GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
           cyclase 2E)
          Length = 1108

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 158 RGAGTP-HFVGGPTGAPSPGRGPCCTAEP 241
           R AGTP HF   P G P+PG  P C  +P
Sbjct: 431 RSAGTPMHF---PRGGPAPGPDPSCWFDP 456



to top

>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48) (His-domain-containing protein tyrosine
            phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14)
            (PTP-TD14)
          Length = 1636

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
 Frame = +2

Query: 11   PFPPHTRRSDAPFPSSLSPPHRRRTXXXXXXXXXXXXXXXXXXRRRIYARGAGTP--HFV 184
            P P H+     P P    PPH                       R   + G  TP  H V
Sbjct: 1026 PLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLV 1085

Query: 185  GGPTGAPSPGRGP 223
              P+ APSPG GP
Sbjct: 1086 --PSPAPSPGPGP 1096



to top

>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)|
           (Forkhead-like 18 protein)
          Length = 330

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 231 VQQGPLPGEGAPVGPPTK 178
           +QQ PLPG GAP   PTK
Sbjct: 1   MQQQPLPGPGAPTTEPTK 18



to top

>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 246  SNGSAVQQGPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDP 124
            S+G   +QG + G   P+GPP   G+P P      +GS  P
Sbjct: 1511 SSGPKGEQG-ITGPSGPIGPPGPPGLPGPPGPKGAKGSSGP 1550



to top

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PFPPHTRRSDAPFPSSLSPPHRRRT 85
           P PP TRR  +P P+   PP RRRT
Sbjct: 564 PSPPPTRRRRSPSPA--PPPRRRRT 586



to top

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PFPPHTRRSDAPFPSSLSPPHRRRT 85
           P PP TRR  +P P+   PP RRRT
Sbjct: 550 PSPPPTRRRRSPSPA--PPPRRRRT 572



to top

>MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 591

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 228 QQGPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDPV 121
           Q+ PLPG   P   PT+  VPAP   +   G G  V
Sbjct: 408 QKTPLPGPPPPPATPTQTLVPAPVHLVATAGGGSTV 443



to top

>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 246 SNGSAVQQGPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDP 124
           S G    +GP P  G P GPP + G    R    RR  G P
Sbjct: 230 SQGGNKPRGPPPHPGKPQGPPPQEGNKPQRPPPPRRPQGPP 270



to top

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = -3

Query: 246 SNGSAVQQGPLPGEGA--PVGPPTKWGVPAP----RA*IRRRGSGDP 124
           S G+A + GP PG G   P G P   G P P    R+   R G G P
Sbjct: 192 STGAADRPGPRPGGGGPRPGGGPRPGGAPRPQGGQRSGAPRDGQGGP 238



to top

>SFTPD_HUMAN (P35247) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 375

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 243 NGSAVQQGPLPGEGAPVGPPTKWGVPAP 160
           NGS  + GP  G+  P GPP   GVP P
Sbjct: 90  NGSVGEPGP-KGDTGPSGPPGPPGVPGP 116



to top

>EMID2_MOUSE (Q91VF6) Collagen alpha-1(XXVI) chain precursor (EMI|
           domain-containing protein 2) (Emu2 protein) (Emilin and
           multimerin domain-containing protein 2)
          Length = 440

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 240 GSAVQQGPLPGEGAPVGPPTKWGVPAPR 157
           GS  +QG   GE  PVGPP   G P PR
Sbjct: 217 GSKGEQGQT-GEKGPVGPPGLLGPPGPR 243



to top

>AF9_USTMA (Q4PFI5) Protein AF-9 homolog|
          Length = 431

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 236 EPLLLFHHLQIEPW 277
           +PL LFHHL++ PW
Sbjct: 171 KPLTLFHHLKLHPW 184



to top

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -3

Query: 246  SNGSAVQQGPLPGEGAPVGPPTKWGVPAPRA*IRRRGSGDPV 121
            S GS    GP  G+  P GPP   G PA    +RRR    PV
Sbjct: 1464 SKGSPGSMGPR-GDTGPAGPPGPPGAPAELHGLRRRRRFVPV 1504


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,028,987
Number of Sequences: 219361
Number of extensions: 1354181
Number of successful extensions: 6274
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6222
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top