ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARCA_RHIET (O31017) Arginine deiminase (EC 3.5.3.6) (ADI) (Argin... 30 2.3
2ICB1_HUMAN (Q5TEJ8) Induced by contact to basement membrane 1 pr... 26 6.5
3MUC1_YEAST (P08640) Mucin-like protein 1 precursor 28 8.8

>ARCA_RHIET (O31017) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine|
           dihydrolase) (AD)
          Length = 409

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 29  PLFKKKTALLCSAPLSSFPPTPLPQTLLERSNGRPIHGGI 148
           P  K K+ +L + P + F   P+P TL +R     I+GG+
Sbjct: 129 PEVKAKSLMLSALPETDFVIPPIPNTLFQRDPSCWIYGGV 168



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>ICB1_HUMAN (Q5TEJ8) Induced by contact to basement membrane 1 protein (Protein|
           ICB-1)
          Length = 643

 Score = 25.8 bits (55), Expect(2) = 6.5
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +2

Query: 17  SSAHPLFKKKTALLCSAPLSSFPPTPLPQTLLERSNGRPIHGGIW 151
           SS H  F K   LL S  L+   P PL   +LE   GRPI    W
Sbjct: 237 SSRHVHFIKP--LLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPW 279



 Score = 21.2 bits (43), Expect(2) = 6.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 136 PWRNLVSSPAESYQVHFFFS 195
           PWR L SS       HF  S
Sbjct: 298 PWRVLASSKGRKVPRHFLVS 317



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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 5   TSPHSSAHPLFKKKTALLCSAPLSSFPPTPLPQTLLERSNGRPI 136
           T PH    P  KKKT    +    +  P P P +    S+  P+
Sbjct: 286 TPPHHDTTPCTKKKTTTSKTCTKKTTTPVPTPSSSTTESSSAPV 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,075,152
Number of Sequences: 219361
Number of extensions: 349920
Number of successful extensions: 1245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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