ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 30 3.2
2AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Pro... 29 5.5

>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 398

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 269 PPFHLFLSTAHLMSTTILIYICW 337
           P  HL L  A L+S+++ IY+CW
Sbjct: 18  PGTHLALLAASLLSSSVAIYVCW 40



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>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 270 GSNDSSKADQEEEDKSPPPLSQIQISGDPP 181
           GS+DS+ + +  E K PPP S  +    PP
Sbjct: 546 GSSDSATSQEHSESKDPPPKSSSKAPRAPP 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,449,417
Number of Sequences: 219361
Number of extensions: 1360286
Number of successful extensions: 3493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3486
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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