ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_634194.1| Dictyostelium discoideum hypothetical protein (... 44 0.41
2gb|AY214157.1| Oncorhynchus nerka RH2 opsin mRNA, complete cds 44 0.41
3gb|AY214147.1| Oncorhynchus kisutch RH2 opsin mRNA, complete cds 44 0.41
4gb|AY214132.1| Salmo salar RH2 opsin mRNA, complete cds 44 0.41
5gb|AF425076.1| Oncorhynchus mykiss RH2 opsin mRNA, complete cds 44 0.41
6emb|AL355474.15| Human DNA sequence from clone RP11-55C5 on chro... 44 0.41
7emb|BX601647.4| Zebrafish DNA sequence from clone DKEY-19N10 in ... 44 0.41
8gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete s... 44 0.41
9gb|AC069555.5|AC069555 Genomic Sequence For Arabidopsis thaliana... 44 0.41
10gb|AC069552.5|AC069552 Genomic Sequence For Arabidopsis thaliana... 44 0.41
11gb|AC126598.13| Mus musculus chromosome 5, clone RP24-486L9, com... 42 1.6
12gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cance... 42 1.6
13gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Can... 42 1.6
14gb|AC099741.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.6
15gb|AC099948.9| Mus musculus chromosome 10, clone RP23-19D21, com... 42 1.6
16gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosom... 42 1.6
17gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, com... 42 1.6
18gb|AC084030.5| Homo sapiens BAC clone RP11-205L13 from 2, comple... 42 1.6
19gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 1.6
20emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, co... 42 1.6
21gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, com... 40 6.4
22gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 6.4
23gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
24gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete... 40 6.4
25gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, co... 40 6.4
26ref|NM_001012981.2| Homo sapiens zinc finger protein 694 (ZNF694... 40 6.4
27gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome... 40 6.4
28gb|AC115904.13| Mus musculus chromosome 16, clone RP24-472P22, c... 40 6.4
29gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, comple... 40 6.4
30gb|AC146043.2| Pan troglodytes BAC clone RP43-109E16 from 7, com... 40 6.4
31gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosom... 40 6.4
32gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome... 40 6.4
33gb|AC105405.3| Mus musculus BAC clone RP24-119C8 from 9, complet... 40 6.4
34ref|XM_719843.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.4
35gb|AC004455.2| Homo sapiens PAC clone RP5-1032B10 from 7, comple... 40 6.4
36emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chr... 40 6.4
37emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on ch... 40 6.4
38emb|AL160059.7| Human DNA sequence from clone RP11-94G15 on chro... 40 6.4
39emb|AL133345.11| Human DNA sequence from clone RP5-1056J6 on chr... 40 6.4
40emb|Z48622.1|SC9553 S.cerevisiae chromosome XIII cosmid 9553 40 6.4
41ref|XM_780666.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
42gb|AC161482.6| Mus musculus chromosome 1, clone RP23-415K20, com... 40 6.4
43emb|BX648785.1|HSM808936 Homo sapiens mRNA; cDNA DKFZp686G09165 ... 40 6.4
44gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, comp... 40 6.4
45gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 40 6.4
46gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, com... 40 6.4
47gb|AC160108.2| Mus musculus BAC clone RP24-155K11 from chromosom... 40 6.4
48dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49gb|AC074052.6| Homo sapiens chromosome 16 clone RP11-483K5, comp... 40 6.4
50gb|AC157092.6| Mus musculus 10 BAC RP24-397N4 (Roswell Park Canc... 40 6.4
51gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Can... 40 6.4
52gb|AC145987.2| Pan troglodytes BAC clone RP43-165D6 from chromos... 40 6.4
53gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, com... 40 6.4
54gb|AC073321.4| Homo sapiens BAC clone RP11-307A11 from 2, comple... 40 6.4
55gb|AC138761.4| Homo sapiens chromosome 17, clone RP11-1109M24, c... 40 6.4
56gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence 40 6.4
57gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42... 40 6.4
58gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 6.4
59gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
60gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complet... 40 6.4
61gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complet... 40 6.4
62gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, comple... 40 6.4
63gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, co... 40 6.4
64gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome... 40 6.4
65emb|AL929129.6| Mouse DNA sequence from clone RP23-238P9 on chro... 40 6.4
66emb|AL671782.5| Mouse DNA sequence from clone RP23-102I3 on chro... 40 6.4
67emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chr... 40 6.4
68emb|Z79396.1|HSPA7A3 H.sapiens flow-sorted chromosome 6 TaqI fra... 40 6.4 
>ref|XM_634194.1| Dictyostelium discoideum hypothetical protein (DDB0185291), partial
           mRNA
          Length = 1242

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 119 taactttttcatttgcaaaatt 140
           ||||||||||||||||||||||
Sbjct: 163 taactttttcatttgcaaaatt 142
to top
>gb|AY214157.1| Oncorhynchus nerka RH2 opsin mRNA, complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 ttcttcctgatctgctttggat 256
           ||||||||||||||||||||||
Sbjct: 136 ttcttcctgatctgctttggat 157
to top
>gb|AY214147.1| Oncorhynchus kisutch RH2 opsin mRNA, complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 ttcttcctgatctgctttggat 256
           ||||||||||||||||||||||
Sbjct: 136 ttcttcctgatctgctttggat 157
to top
>gb|AY214132.1| Salmo salar RH2 opsin mRNA, complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 ttcttcctgatctgctttggat 256
           ||||||||||||||||||||||
Sbjct: 136 ttcttcctgatctgctttggat 157
to top
>gb|AF425076.1| Oncorhynchus mykiss RH2 opsin mRNA, complete cds
          Length = 1720

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 ttcttcctgatctgctttggat 256
           ||||||||||||||||||||||
Sbjct: 216 ttcttcctgatctgctttggat 237
to top
>emb|AL355474.15| Human DNA sequence from clone RP11-55C5 on chromosome 10 Contains a novel
              gene and the 5' end of the FAM13C1 gene for family with
              sequence similarity 13 member C1, complete sequence
          Length = 120194

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 420    tctcagtttagtttcttcttct 441
              ||||||||||||||||||||||
Sbjct: 109050 tctcagtttagtttcttcttct 109029
to top
>emb|BX601647.4| Zebrafish DNA sequence from clone DKEY-19N10 in linkage group 9,
             complete sequence
          Length = 100697

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 420   tctcagtttagtttcttcttct 441
             ||||||||||||||||||||||
Sbjct: 60090 tctcagtttagtttcttcttct 60069
to top
>gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete sequence
          Length = 122280

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    ggatgatctcaaattcttgatc 109
             ||||||||||||||||||||||
Sbjct: 30994 ggatgatctcaaattcttgatc 30973
to top
>gb|AC069555.5|AC069555 Genomic Sequence For Arabidopsis thaliana Clone F7I20 From Chromosome
             V, complete sequence
          Length = 111893

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 265   acttcctccatttcatttatttctct 290
             ||||||||||||||||| ||||||||
Sbjct: 98765 acttcctccatttcattcatttctct 98740
to top
>gb|AC069552.5|AC069552 Genomic Sequence For Arabidopsis thaliana Clone F17M07 From Chromosome
             V, complete sequence
          Length = 105743

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 265   acttcctccatttcatttatttctct 290
             ||||||||||||||||| ||||||||
Sbjct: 85033 acttcctccatttcattcatttctct 85058
to top
>gb|AC126598.13| Mus musculus chromosome 5, clone RP24-486L9, complete sequence
          Length = 168471

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   tggtggttcttcagaaattgg 355
             |||||||||||||||||||||
Sbjct: 11795 tggtggttcttcagaaattgg 11775
to top
>gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 204841

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 280   tttatttctctccacagctcacctt 304
             |||||||||||||| ||||||||||
Sbjct: 13648 tttatttctctccaaagctcacctt 13672
to top
>gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 170819

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 280   tttatttctctccacagctcacctt 304
             |||||||||||||| ||||||||||
Sbjct: 26308 tttatttctctccaaagctcacctt 26332
to top
>gb|AC099741.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-92M3, complete
              sequence
          Length = 249636

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    gtttagtttcttcttctccag 445
              |||||||||||||||||||||
Sbjct: 228451 gtttagtttcttcttctccag 228431
to top
>gb|AC099948.9| Mus musculus chromosome 10, clone RP23-19D21, complete sequence
          Length = 203086

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 280    tttatttctctccacagctcacctt 304
              |||||||||||||| ||||||||||
Sbjct: 135697 tttatttctctccaaagctcacctt 135721
to top
>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence
          Length = 212735

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 425    gtttagtttcttcttctccag 445
              |||||||||||||||||||||
Sbjct: 105596 gtttagtttcttcttctccag 105616
to top
>gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, complete sequence
          Length = 177013

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    tggtggttcttcagaaattgg 355
              |||||||||||||||||||||
Sbjct: 171394 tggtggttcttcagaaattgg 171374
to top
>gb|AC084030.5| Homo sapiens BAC clone RP11-205L13 from 2, complete sequence
          Length = 100731

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   tctccagaggttctgatttgg 172
             |||||||||||||||||||||
Sbjct: 67902 tctccagaggttctgatttgg 67922
to top
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 122     ctttttcatttgcaaaattcaataattta 150
               |||||||||||| | ||||||||||||||
Sbjct: 2938496 ctttttcatttgtagaattcaataattta 2938524
to top
>emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, complete sequence
          Length = 193193

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 124   ttttcatttgcaaaattcaataatt 148
             |||||||||| ||||||||||||||
Sbjct: 71725 ttttcatttgaaaaattcaataatt 71701
to top
>gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, complete sequence
          Length = 175758

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 189  ctccagaaatttggatttggctta 212
            |||| |||||||||||||||||||
Sbjct: 8936 ctcctgaaatttggatttggctta 8959
to top
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    gggagcacctatcgtcttgg 392
              ||||||||||||||||||||
Sbjct: 828126 gggagcacctatcgtcttgg 828145
to top
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08,
              complete sequence
          Length = 180999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tggatctccagaaatttgga 203
              ||||||||||||||||||||
Sbjct: 144947 tggatctccagaaatttgga 144966
to top
>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence
          Length = 164971

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   tgacttaactttttcatttgcaaa 137
             |||||||||||| |||||||||||
Sbjct: 72680 tgacttaactttatcatttgcaaa 72703
to top
>gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, complete sequence
          Length = 176600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 116   acttaactttttcatttgcaaaattcaa 143
             |||||||||||| ||||| |||||||||
Sbjct: 35763 acttaacttttttatttgtaaaattcaa 35790
to top
>ref|NM_001012981.2| Homo sapiens zinc finger protein 694 (ZNF694), mRNA
          Length = 7125

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  ttctgatttacatttgttgg 337
            ||||||||||||||||||||
Sbjct: 5075 ttctgatttacatttgttgg 5094
to top
>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 88     ggatgatctcaaattcttgatccctctg 115
              ||||||||||||||| ||||||| ||||
Sbjct: 145413 ggatgatctcaaatttttgatccttctg 145386
to top
>gb|AC115904.13| Mus musculus chromosome 16, clone RP24-472P22, complete sequence
          Length = 167938

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttgcaaaattcaataattta 150
              ||||||||||||||||||||
Sbjct: 163185 ttgcaaaattcaataattta 163204
to top
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence
          Length = 157092

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   atctccagaaatttggattt 206
             ||||||||||||||||||||
Sbjct: 11970 atctccagaaatttggattt 11989
to top
>gb|AC146043.2| Pan troglodytes BAC clone RP43-109E16 from 7, complete sequence
          Length = 154413

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   actctccagaggttctgatt 169
             ||||||||||||||||||||
Sbjct: 82744 actctccagaggttctgatt 82725
to top
>gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosome 7, complete sequence
          Length = 184180

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tctgcgttggatgatcatta 415
             ||||||||||||||||||||
Sbjct: 34686 tctgcgttggatgatcatta 34705
to top
>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence
          Length = 230221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    ttgcaaaattcaataattta 150
              ||||||||||||||||||||
Sbjct: 196081 ttgcaaaattcaataattta 196062
to top
>gb|AC105405.3| Mus musculus BAC clone RP24-119C8 from 9, complete sequence
          Length = 47060

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   ggtggttcttcagaaattgg 355
             ||||||||||||||||||||
Sbjct: 39458 ggtggttcttcagaaattgg 39477
to top
>ref|XM_719843.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04610)
            partial mRNA
          Length = 6153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  tttttcatttgcaaaattca 142
            ||||||||||||||||||||
Sbjct: 4698 tttttcatttgcaaaattca 4679
to top
>gb|AC004455.2| Homo sapiens PAC clone RP5-1032B10 from 7, complete sequence
          Length = 78520

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   actctccagaggttctgatt 169
             ||||||||||||||||||||
Sbjct: 63604 actctccagaggttctgatt 63585
to top
>emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chromosome 13, complete
             sequence
          Length = 167477

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   ttttcatttgcaaaattcaa 143
             ||||||||||||||||||||
Sbjct: 61082 ttttcatttgcaaaattcaa 61063
to top
>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the
             5' end of the SMYD3 gene for SET and MYND domain
             containing 3, an ubiquitin specific protease 6 (Tre-2
             oncogene) (USP6) pseudogene, a novel gene, a pseudogene
             similar to part of tumor necrosis factor receptor
             superfamily member 13B (TNFRSF13B), a pseudogene similar
             to part of carboxypeptidase D (CPD), the TFB2M gene for
             mitochondrial transcription factor B2, the 5' end of the
             gene for a novel protein (FLJ32001, DKFZp451A152,
             DKFZp451B077, FLJ00215) and two CpG islands, complete
             sequence
          Length = 207486

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cctccatttcatttatttct 288
             ||||||||||||||||||||
Sbjct: 97229 cctccatttcatttatttct 97210
to top
>emb|AL160059.7| Human DNA sequence from clone RP11-94G15 on chromosome 1 Contains the 5'
              end of the CACNA1E gene for calcium channel
              voltage-dependent alpha 1E subunit, complete sequence
          Length = 153926

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    atctccagaaatttggattt 206
              ||||||||||||||||||||
Sbjct: 119180 atctccagaaatttggattt 119161
to top
>emb|AL133345.11| Human DNA sequence from clone RP5-1056J6 on chromosome 20, complete
            sequence
          Length = 12661

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  ttctgatttggattatcatt 181
            ||||||||||||||||||||
Sbjct: 6036 ttctgatttggattatcatt 6055
to top
>emb|Z48622.1|SC9553 S.cerevisiae chromosome XIII cosmid 9553
          Length = 16279

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  ttgtcttcttcttcctgatc 246
            ||||||||||||||||||||
Sbjct: 5671 ttgtcttcttcttcctgatc 5652
to top
>ref|XM_780666.1| PREDICTED: Strongylocentrotus purpuratus similar to Tudor and KH
           domain containing protein (LOC580618), mRNA
          Length = 1568

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 tcctccatttcatttatttc 287
           ||||||||||||||||||||
Sbjct: 694 tcctccatttcatttatttc 675
to top
>gb|AC161482.6| Mus musculus chromosome 1, clone RP23-415K20, complete sequence
          Length = 190103

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ttggtggttcttcagaaatt 353
             ||||||||||||||||||||
Sbjct: 34994 ttggtggttcttcagaaatt 34975
to top
>emb|BX648785.1|HSM808936 Homo sapiens mRNA; cDNA DKFZp686G09165 (from clone DKFZp686G09165)
          Length = 7125

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  ttctgatttacatttgttgg 337
            ||||||||||||||||||||
Sbjct: 5075 ttctgatttacatttgttgg 5094
to top
>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence
          Length = 112032

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 112   tctgacttaactttttcatttgcaaaattcaataat 147
             ||||||||||||| || ||||| |||| ||||||||
Sbjct: 59169 tctgacttaacttgttaatttgtaaaactcaataat 59134
to top
>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 259    atcattacttcctccatttcattt 282
              ||||||| ||||||||||||||||
Sbjct: 128186 atcattaattcctccatttcattt 128209
to top
>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence
          Length = 168539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 112    tctgacttaactttttcatttgcaaaattcaataat 147
              ||||||||||||| || ||||| |||| ||||||||
Sbjct: 156366 tctgacttaacttgttaatttgtaaaactcaataat 156401
to top
>gb|AC160108.2| Mus musculus BAC clone RP24-155K11 from chromosome 13, complete sequence
          Length = 168567

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 116    acttaactttttcatttgcaaaattcaa 143
              |||||||||||| ||||| |||||||||
Sbjct: 162735 acttaacttttttatttgtaaaattcaa 162762
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     tggatctccagaaatttgga 203
               ||||||||||||||||||||
Sbjct: 7853001 tggatctccagaaatttgga 7852982
to top
>gb|AC074052.6| Homo sapiens chromosome 16 clone RP11-483K5, complete sequence
          Length = 188458

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttgcaaaattcaataattta 150
              ||||||||||||||||||||
Sbjct: 147655 ttgcaaaattcaataattta 147674
to top
>gb|AC157092.6| Mus musculus 10 BAC RP24-397N4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 141291

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    ttggtggttcttcagaaatt 353
              ||||||||||||||||||||
Sbjct: 118116 ttggtggttcttcagaaatt 118097
to top
>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 228073

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    ttggtggttcttcagaaatt 353
              ||||||||||||||||||||
Sbjct: 222286 ttggtggttcttcagaaatt 222305
to top
>gb|AC145987.2| Pan troglodytes BAC clone RP43-165D6 from chromosome 7, complete sequence
          Length = 158415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    atctccagaaatttggattt 206
              ||||||||||||||||||||
Sbjct: 138591 atctccagaaatttggattt 138610
to top
>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence
          Length = 206295

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    ttctgatttacatttgttgg 337
              ||||||||||||||||||||
Sbjct: 108531 ttctgatttacatttgttgg 108550
to top
>gb|AC073321.4| Homo sapiens BAC clone RP11-307A11 from 2, complete sequence
          Length = 162208

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ctccagaaatttggatttgg 208
             ||||||||||||||||||||
Sbjct: 68285 ctccagaaatttggatttgg 68266
to top
>gb|AC138761.4| Homo sapiens chromosome 17, clone RP11-1109M24, complete sequence
          Length = 155327

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ttttcatttgcaaaattcaa 143
             ||||||||||||||||||||
Sbjct: 28807 ttttcatttgcaaaattcaa 28826
to top
>gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence
          Length = 173295

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   atctccagaaatttggattt 206
             ||||||||||||||||||||
Sbjct: 98274 atctccagaaatttggattt 98293
to top
>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete
              sequence
          Length = 220679

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    tgacttaactttttcatttgcaaa 137
              |||||||||||| |||||||||||
Sbjct: 106440 tgacttaactttatcatttgcaaa 106417
to top
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     catttcatttatttctctcc 292
               ||||||||||||||||||||
Sbjct: 1202442 catttcatttatttctctcc 1202423
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     tggatctccagaaatttgga 203
               ||||||||||||||||||||
Sbjct: 7923088 tggatctccagaaatttgga 7923069
to top
>gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complete sequence
          Length = 206831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    ggtggttcttcagaaattgg 355
              ||||||||||||||||||||
Sbjct: 201914 ggtggttcttcagaaattgg 201895
to top
>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence
          Length = 205543

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   tctgcgttggatgatcatta 415
             ||||||||||||||||||||
Sbjct: 11521 tctgcgttggatgatcatta 11502
to top
>gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, complete sequence
          Length = 204800

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 88     ggatgatctcaaattcttgatccctctg 115
              ||||||||||||||| ||||||| ||||
Sbjct: 203145 ggatgatctcaaatttttgatccttctg 203172
to top
>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence
          Length = 198756

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    ttttcatttgcaaaattcaa 143
              ||||||||||||||||||||
Sbjct: 186865 ttttcatttgcaaaattcaa 186846
to top
>gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome 12, complete sequence
          Length = 178326

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    acttgtcttcttcttcctga 244
              ||||||||||||||||||||
Sbjct: 104369 acttgtcttcttcttcctga 104350
to top
>emb|AL929129.6| Mouse DNA sequence from clone RP23-238P9 on chromosome 2, complete
             sequence
          Length = 139558

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 413   ttacctttctcagtttagtttctt 436
             |||| |||||||||||||||||||
Sbjct: 55948 ttacatttctcagtttagtttctt 55925
to top
>emb|AL671782.5| Mouse DNA sequence from clone RP23-102I3 on chromosome X, complete
            sequence
          Length = 192583

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  ttggtggttcttcagaaatt 353
            ||||||||||||||||||||
Sbjct: 1765 ttggtggttcttcagaaatt 1746
to top
>emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chromosome X, complete
              sequence
          Length = 189048

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    ttggtggttcttcagaaatt 353
              ||||||||||||||||||||
Sbjct: 188813 ttggtggttcttcagaaatt 188794
to top
>emb|Z79396.1|HSPA7A3 H.sapiens flow-sorted chromosome 6 TaqI fragment, SC6pA7A3
          Length = 203

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 ttgtcttcttcttcctgatc 246
           ||||||||||||||||||||
Sbjct: 178 ttgtcttcttcttcctgatc 159


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,807,568
Number of Sequences: 3902068
Number of extensions: 6807568
Number of successful extensions: 142523
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142214
Number of HSP's gapped (non-prelim): 309
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top