ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55c11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 1e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||| ||| |||| || |||||| |||| || || || ||||||||||||| Sbjct: 3346620 cctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccagc 3346679 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||||||||||| |||||||| |||| | |||| ||||||||||||| |||||| || | Sbjct: 3346680 catccaccccggcgtttggcgcgacgtccgctggggccttcggccagccatccactccgg 3346739 Query: 453 cgtttggc 460 |||||||| Sbjct: 3346740 cgtttggc 3346747 Score = 73.8 bits (37), Expect = 5e-10 Identities = 105/128 (82%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||||||||||||||| |||||| | | || || || ||||||||||||| Sbjct: 3338014 cctttggccagccatccgctccggcgtttggctcaatgtccaccggagcctttggccagc 3338073 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | |||| ||| || ||||| ||||||| |||||| | | Sbjct: 3338074 catccgctccggcgtttggctcaacgtccaccggagcctttggccagccatccactcagg 3338133 Query: 453 cgtttggc 460 |||||||| Sbjct: 3338134 cgtttggc 3338141 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 380 gcctttggccagcagtccaccccggcctttggcgctacgtncactggcgccttcggccag 439 ||||||||||||| |||||| || || |||||| | |||| ||| || ||||| |||||| Sbjct: 3346619 gcctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccag 3346678 Query: 440 caatccacccctgcgtttggc 460 | ||||||||| ||||||||| Sbjct: 3346679 ccatccaccccggcgtttggc 3346699 Score = 63.9 bits (32), Expect = 4e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 |||||||||||||||| |||||| | |||||| | || || || || ||||||||||||| Sbjct: 3337966 cctttggccagccatctgctccgacgtttggctcgacgtctaccggagcctttggccagc 3338025 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | | || ||| || ||||| ||||||| |||| | || | Sbjct: 3338026 catccgctccggcgtttggctcaatgtccaccggagcctttggccagccatccgctccgg 3338085 Query: 453 cgtttggctctacatccac 471 |||||||||| || ||||| Sbjct: 3338086 cgtttggctcaacgtccac 3338104 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcggg 205 ||||||||||||||||| |||| |||||| |||||| Sbjct: 3337797 agcccttttgggcagacctcaagcaacccattcggg 3337832 Score = 40.1 bits (20), Expect = 6.4 Identities = 91/112 (81%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 228 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 3346454 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 3346512 Query: 229 cagcaccaccaacaacaatcccttcgcacccgaacccttcggcagcccgacc 280 ||||||| ||| | |||||| ||||| || |||| || |||||||||||| Sbjct: 3346513 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 3346564
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 1e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||| ||| |||| || |||||| |||| || || || ||||||||||||| Sbjct: 3346565 cctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccagc 3346624 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||||||||||| |||||||| |||| | |||| ||||||||||||| |||||| || | Sbjct: 3346625 catccaccccggcgtttggcgcgacgtccgctggggccttcggccagccatccactccgg 3346684 Query: 453 cgtttggc 460 |||||||| Sbjct: 3346685 cgtttggc 3346692 Score = 73.8 bits (37), Expect = 5e-10 Identities = 105/128 (82%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||||||||||||||| |||||| | | || || || ||||||||||||| Sbjct: 3337959 cctttggccagccatccgctccggcgtttggctcaatgtccaccggagcctttggccagc 3338018 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | |||| ||| || ||||| ||||||| |||||| | | Sbjct: 3338019 catccgctccggcgtttggctcaacgtccaccggagcctttggccagccatccactcagg 3338078 Query: 453 cgtttggc 460 |||||||| Sbjct: 3338079 cgtttggc 3338086 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 380 gcctttggccagcagtccaccccggcctttggcgctacgtncactggcgccttcggccag 439 ||||||||||||| |||||| || || |||||| | |||| ||| || ||||| |||||| Sbjct: 3346564 gcctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccag 3346623 Query: 440 caatccacccctgcgtttggc 460 | ||||||||| ||||||||| Sbjct: 3346624 ccatccaccccggcgtttggc 3346644 Score = 63.9 bits (32), Expect = 4e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 |||||||||||||||| |||||| | |||||| | || || || || ||||||||||||| Sbjct: 3337911 cctttggccagccatctgctccgacgtttggctcgacgtctaccggagcctttggccagc 3337970 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | | || ||| || ||||| ||||||| |||| | || | Sbjct: 3337971 catccgctccggcgtttggctcaatgtccaccggagcctttggccagccatccgctccgg 3338030 Query: 453 cgtttggctctacatccac 471 |||||||||| || ||||| Sbjct: 3338031 cgtttggctcaacgtccac 3338049 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcggg 205 ||||||||||||||||| |||| |||||| |||||| Sbjct: 3337742 agcccttttgggcagacctcaagcaacccattcggg 3337777 Score = 40.1 bits (20), Expect = 6.4 Identities = 91/112 (81%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 228 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 3346399 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 3346457 Query: 229 cagcaccaccaacaacaatcccttcgcacccgaacccttcggcagcccgacc 280 ||||||| ||| | |||||| ||||| || |||| || |||||||||||| Sbjct: 3346458 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 3346509
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 105 bits (53), Expect = 1e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||| ||| |||| || |||||| |||| || || || ||||||||||||| Sbjct: 25673 cctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccagc 25732 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||||||||||| |||||||| |||| | |||| ||||||||||||| |||||| || | Sbjct: 25733 catccaccccggcgtttggcgcgacgtccgctggggccttcggccagccatccactccgg 25792 Query: 453 cgtttggc 460 |||||||| Sbjct: 25793 cgtttggc 25800 Score = 73.8 bits (37), Expect = 5e-10 Identities = 105/128 (82%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 ||||||||||||||||||||||||| |||||| | | || || || ||||||||||||| Sbjct: 17067 cctttggccagccatccgctccggcgtttggctcaatgtccaccggagcctttggccagc 17126 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | |||| ||| || ||||| ||||||| |||||| | | Sbjct: 17127 catccgctccggcgtttggctcaacgtccaccggagcctttggccagccatccactcagg 17186 Query: 453 cgtttggc 460 |||||||| Sbjct: 17187 cgtttggc 17194 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 380 gcctttggccagcagtccaccccggcctttggcgctacgtncactggcgccttcggccag 439 ||||||||||||| |||||| || || |||||| | |||| ||| || ||||| |||||| Sbjct: 25672 gcctttggccagccgtccactccagcgtttggctccacgtccacaggtgcctttggccag 25731 Query: 440 caatccacccctgcgtttggc 460 | ||||||||| ||||||||| Sbjct: 25732 ccatccaccccggcgtttggc 25752 Score = 63.9 bits (32), Expect = 4e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 333 cctttggccagccatccgctccggcctttggcgccacatcaactggcgcctttggccagc 392 |||||||||||||||| |||||| | |||||| | || || || || ||||||||||||| Sbjct: 17019 cctttggccagccatctgctccgacgtttggctcgacgtctaccggagcctttggccagc 17078 Query: 393 agtccaccccggcctttggcgctacgtncactggcgccttcggccagcaatccacccctg 452 ||| | ||||| |||||| | | || ||| || ||||| ||||||| |||| | || | Sbjct: 17079 catccgctccggcgtttggctcaatgtccaccggagcctttggccagccatccgctccgg 17138 Query: 453 cgtttggctctacatccac 471 |||||||||| || ||||| Sbjct: 17139 cgtttggctcaacgtccac 17157 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcggg 205 ||||||||||||||||| |||| |||||| |||||| Sbjct: 16850 agcccttttgggcagacctcaagcaacccattcggg 16885 Score = 40.1 bits (20), Expect = 6.4 Identities = 91/112 (81%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 170 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 228 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 25507 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 25565 Query: 229 cagcaccaccaacaacaatcccttcgcacccgaacccttcggcagcccgacc 280 ||||||| ||| | |||||| ||||| || |||| || |||||||||||| Sbjct: 25566 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 25617
>ref|XM_608162.2| PREDICTED: Bos taurus similar to Homeobox protein engrailed-1 (Hu-En-1) (LOC529707), mRNA Length = 966 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 90 cctcctccgtccgccgcagccgccaccacca 120 ||||||||| |||||||||||||| |||||| Sbjct: 305 cctcctccggccgccgcagccgccgccacca 275
>gb|AY012605.1| Drosophila kanekoi no on or off transient A (nonA) gene, exon 2 and partial cds Length = 478 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 gtccgccgcagccgccaccacc 119 |||||||||||||||||||||| Sbjct: 319 gtccgccgcagccgccaccacc 298
>ref|XM_483580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1089 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 88 ctcctcctccgtccgccgcagccgccacc 116 ||||||||||| ||||||| ||||||||| Sbjct: 947 ctcctcctccgaccgccgccgccgccacc 975
>ref|NM_001012672.1| Bos taurus uroplakin IIIB (UPK3B), mRNA Length = 2328 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 212 cagggctttggccagcccagcaccaccaa 240 ||||||| |||||||||||||||||||| Sbjct: 219 cagggctggggccagcccagcaccaccaa 191
>ref|XM_324150.1| Neurospora crassa OR74A predicted protein (NCU04794.1) partial mRNA Length = 1113 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 ccgtccgccgcagccgccaccacca 120 ||||||||||| ||||||||||||| Sbjct: 328 ccgtccgccgccgccgccaccacca 352
>ref|XM_955327.1| Neurospora crassa OR74A hypothetical protein (NCU04794.1) partial mRNA Length = 1113 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 ccgtccgccgcagccgccaccacca 120 ||||||||||| ||||||||||||| Sbjct: 328 ccgtccgccgccgccgccaccacca 352
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacca 120 ||||||||||||||||||||| Sbjct: 282300 ccgccgcagccgccaccacca 282320
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacca 120 ||||||||||||||||||||| Sbjct: 285878 ccgccgcagccgccaccacca 285898
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacca 120 ||||||||||||||||||||| Sbjct: 16130 ccgccgcagccgccaccacca 16110
>gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, complete sequence Length = 115289 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacca 120 ||||||||||||||||||||| Sbjct: 111959 ccgccgcagccgccaccacca 111979
>gb|AY233461.1| Bos taurus uroplakin IIIb mRNA, complete cds Length = 2328 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 212 cagggctttggccagcccagcaccaccaa 240 ||||||| |||||||||||||||||||| Sbjct: 219 cagggctggggccagcccagcaccaccaa 191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgcagccgccacc 116 ||||||||||| ||||||| ||||||||| Sbjct: 27070646 ctcctcctccgaccgccgccgccgccacc 27070618 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccaccatcaa 124 ||||||| ||||||||||||||||| Sbjct: 2424751 ccgccgccgccgccaccaccatcaa 2424775 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 25925567 ccgccgcagccgccaccacc 25925548
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 gccgccaccaccatcaaccag 128 ||||||||||||||||||||| Sbjct: 480702 gccgccaccaccatcaaccag 480722
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccaccatcaa 124 ||||||| ||||||||||||||||| Sbjct: 100721 ccgccgccgccgccaccaccatcaa 100745
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgcagccgccacc 116 ||||||||||| ||||||| ||||||||| Sbjct: 41733 ctcctcctccgaccgccgccgccgccacc 41705
>dbj|AK108062.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B03, full insert sequence Length = 1833 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccaccatcaa 124 ||||||| ||||||||||||||||| Sbjct: 53 ccgccgccgccgccaccaccatcaa 29
>gb|AC005335.1|AC005335 Homo sapiens chromosome 19, cosmid R34296, complete sequence Length = 47003 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacca 120 ||||||||||||||||||||| Sbjct: 39369 ccgccgcagccgccaccacca 39349
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 1064 ccgccgcagccgccaccacc 1083
>gb|DQ115388.1| Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence Length = 74589 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 73 caggtgacccaccatctcctcctccgtccgccgcagccgc 112 ||||| || ||||||||||| ||||||| || |||||||| Sbjct: 28545 caggtcacgcaccatctcctgctccgtctgctgcagccgc 28506
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gaaggagaagcaacccccac 41 |||||||||||||||||||| Sbjct: 96261 gaaggagaagcaacccccac 96242
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ggcgcctttggccagcagtc 396 |||||||||||||||||||| Sbjct: 105007 ggcgcctttggccagcagtc 105026
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 30078 cgccgcagccgccaccacca 30097
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cctcctccgtccgccgcagc 109 |||||||||||||||||||| Sbjct: 116685 cctcctccgtccgccgcagc 116666
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 158537 cgccgcagccgccaccacca 158556
>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence Length = 184265 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 131532 cgccgcagccgccaccacca 131513
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 160698 ccgccgcagccgccaccacc 160679
>ref|XM_842899.1| Leishmania major strain Friedlin serine peptidase, clan SP, family S59 (LMJ_0294) partial mRNA Length = 4671 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ggcgcctttggccagcagtc 396 |||||||||||||||||||| Sbjct: 1384 ggcgcctttggccagcagtc 1403
>gb|AC026470.6| Homo sapiens chromosome 16 clone RP11-44I10, complete sequence Length = 169566 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caccaccatcaaccagccatgttc 136 ||||||||||||||||||| |||| Sbjct: 30627 caccaccatcaaccagccaggttc 30650
>gb|AC142096.25| Medicago truncatula clone mth2-6m16, complete sequence Length = 129053 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cgtccgccgcagccgccaccacca 120 |||||||| ||||||||||||||| Sbjct: 45754 cgtccgcctcagccgccaccacca 45731
>gb|AC142507.13| Medicago truncatula clone mth2-30h19, complete sequence Length = 117666 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 cgtccgccgcagccgccaccacca 120 |||||||| ||||||||||||||| Sbjct: 105902 cgtccgcctcagccgccaccacca 105925
>gb|AC146705.11| Medicago truncatula clone mth2-101f3, complete sequence Length = 120058 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cccagcaccaccaacaacaa 246 |||||||||||||||||||| Sbjct: 10197 cccagcaccaccaacaacaa 10216
>emb|Z35146.1|BFHOX6G B.floridae Hox-6 gene for homeobox protein (partial) Length = 681 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgccaccaccatcaaccagc 129 |||||||||||||||||||| Sbjct: 597 cgccaccaccatcaaccagc 616
>gb|BC070062.1| Homo sapiens Ras and Rab interactor 3, mRNA (cDNA clone MGC:87258 IMAGE:30332851), complete cds Length = 3617 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 2824 ccgccgcagccgccaccacc 2805
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 ctttggccagcccagcaccaccaa 240 ||||| |||||||||||||||||| Sbjct: 3061291 ctttgcccagcccagcaccaccaa 3061314
>gb|AC023813.6| Homo sapiens chromosome 16 clone CTC-527H23, complete sequence Length = 127725 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caccaccatcaaccagccatgttc 136 ||||||||||||||||||| |||| Sbjct: 83442 caccaccatcaaccagccaggttc 83465
>gb|DQ270991.1| Mustela vison clone IX5J4 microsatellite sequence Length = 467 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgca 107 |||||||||||||||||||| Sbjct: 457 ctcctcctccgtccgccgca 438
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 23955 ccgccgcagccgccaccacc 23936
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 122002 ccgccgcagccgccaccacc 121983
>ref|NM_132412.1| Drosophila melanogaster CG9817-RA (CG9817), mRNA Length = 6497 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 3286 ccgccgcagccgccaccacc 3267
>ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (Fib), mRNA Length = 1331 Score = 40.1 bits (20), Expect = 6.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgcagccgccaccacc 119 |||||||||| |||||||| |||||||||||| Sbjct: 184 ctcctcctcc-tccgccgccgccgccaccacc 154
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds Length = 68460 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cccagcaccaccaacaacaa 246 |||||||||||||||||||| Sbjct: 2764 cccagcaccaccaacaacaa 2745
>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone BACR08P09, complete sequence Length = 181463 Score = 40.1 bits (20), Expect = 6.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 88 ctcctcctccgtccgccgcagccgccaccacc 119 |||||||||| |||||||| |||||||||||| Sbjct: 112706 ctcctcctcc-tccgccgccgccgccaccacc 112736
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 17868886 cgccgcagccgccaccacca 17868905 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tctcctcctccgtccgccgc 106 |||||||||||||||||||| Sbjct: 634456 tctcctcctccgtccgccgc 634475
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ggcgccacatcaactggcgc 381 |||||||||||||||||||| Sbjct: 1064065 ggcgccacatcaactggcgc 1064046
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cctcctccgtccgccgcagc 109 |||||||||||||||||||| Sbjct: 599286 cctcctccgtccgccgcagc 599267
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 tccgccgcagccgccaccaccatc 122 |||||||| ||||||||||||||| Sbjct: 6222091 tccgccgccgccgccaccaccatc 6222114
>gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence Length = 133980 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cgccaccaccatcaaccagc 129 |||||||||||||||||||| Sbjct: 114858 cgccaccaccatcaaccagc 114839
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 tccgccgcagccgccaccaccatc 122 |||||||| ||||||||||||||| Sbjct: 19478 tccgccgccgccgccaccaccatc 19501
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 111354 ccgccgcagccgccaccacc 111335
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 10444 ccgccgcagccgccaccacc 10425
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 1225 ccgccgcagccgccaccacc 1244
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ggcgccacatcaactggcgc 381 |||||||||||||||||||| Sbjct: 61653 ggcgccacatcaactggcgc 61634
>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete sequence Length = 283700 Score = 40.1 bits (20), Expect = 6.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 88 ctcctcctccgtccgccgcagccgccaccacc 119 |||||||||| |||||||| |||||||||||| Sbjct: 178519 ctcctcctcc-tccgccgccgccgccaccacc 178549
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 120744 ccgccgcagccgccaccacc 120763
>gb|AC123702.11| Mus musculus chromosome 19, clone RP23-341D12, complete sequence Length = 154959 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 146209 cgccgcagccgccaccacca 146228
>gb|BT001738.1| Drosophila melanogaster RE72617 full insert cDNA Length = 1235 Score = 40.1 bits (20), Expect = 6.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgcagccgccaccacc 119 |||||||||| |||||||| |||||||||||| Sbjct: 184 ctcctcctcc-tccgccgccgccgccaccacc 154
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcagccgccaccacca 120 |||||||||||||||||||| Sbjct: 17963203 cgccgcagccgccaccacca 17963222 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tctcctcctccgtccgccgc 106 |||||||||||||||||||| Sbjct: 634456 tctcctcctccgtccgccgc 634475
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tctcctcctccgtccgccgc 106 |||||||||||||||||||| Sbjct: 108516 tctcctcctccgtccgccgc 108497
>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12 Length = 260050 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ggcgccttcggccagcaatc 444 |||||||||||||||||||| Sbjct: 11694 ggcgccttcggccagcaatc 11675
>dbj|AP004934.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02L13, TM0095a, complete sequence Length = 16590 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ccaccaccatcaaccagcca 131 |||||||||||||||||||| Sbjct: 15965 ccaccaccatcaaccagcca 15984
>gb|U18650.1|RNU18650 Rattus norvegicus Huntington gene product mRNA, complete cds Length = 9929 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcagccgccaccacc 119 |||||||||||||||||||| Sbjct: 99 ccgccgcagccgccaccacc 118
>emb|X05285.1|DMGCR6 D.melanogaster GC-rich dispersed repeat GCR6 (Fibrillarin gene fragment) Length = 441 Score = 40.1 bits (20), Expect = 6.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 88 ctcctcctccgtccgccgcagccgccaccacc 119 |||||||||| |||||||| |||||||||||| Sbjct: 79 ctcctcctcc-tccgccgccgccgccaccacc 49 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,295,449 Number of Sequences: 3902068 Number of extensions: 3295449 Number of successful extensions: 76541 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 75765 Number of HSP's gapped (non-prelim): 766 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
