ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55c10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 164 bits (416), Expect = 6e-41 Identities = 81/115 (70%), Positives = 96/115 (83%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ +TG + + LKG+VVLMRKN L NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D NNG RGKVGAEA+LEQW L ++LP +TTGE++F VTFDW VDKLGVPGAIIVK Sbjct: 62 DPNNGNRGKVGAEASLEQW-LTSSLPSLTTGESRFGVTFDWDVDKLGVPGAIIVK 115
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 164 bits (414), Expect = 1e-40 Identities = 78/114 (68%), Positives = 95/114 (83%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG++ LTG + A LKG+VVLMRKN L NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D +NGGRGKVGAEA LEQW+ T+LP +TTGE+KF +TFDW V+KLGVPGAI+V Sbjct: 63 DQDNGGRGKVGAEAELEQWV--TSLPSLTTGESKFGLTFDWEVEKLGVPGAIVV 114
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 161 bits (408), Expect = 5e-40 Identities = 79/115 (68%), Positives = 97/115 (84%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ LTG + A LKGS+VLMRKNAL NDFGATV+DG++E LGRGVTCQL+SS+ V Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLV 60 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D NNG RG+VG EA+LEQWL T+LP +TTGE+KF VTF+W V+K+G+PGAIIVK Sbjct: 61 DPNNGNRGRVGTEASLEQWL--TSLPSLTTGESKFGVTFEWEVEKMGIPGAIIVK 113
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 112 bits (279), Expect = 5e-25 Identities = 59/115 (51%), Positives = 78/115 (67%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG+ LTG G +KG VLM + L DF A+++D V E+ G +TCQL+S+T Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVA 60 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D NN GRG VG+EANLEQ L T+LP ++ GE+K V F+W +DK GVPGAII+K Sbjct: 61 DQNNEGRGIVGSEANLEQGL--TDLPSVSQGESKLTVRFNWEMDKHGVPGAIIIK 113
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 99.4 bits (246), Expect = 3e-21 Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLIS-STN 250 +GGIV + G +KG V+LM+KN L F + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 251 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D G GK+ A LE WL T++ IT GE+ F+VTFDW D+ GVPGA I+K Sbjct: 63 YD---GLEGKLSNPAYLESWL--TDITPITAGESTFSVTFDWDRDEFGVPGAFIIK 113
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 94.7 bits (234), Expect = 8e-20 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Frame = +2 Query: 95 LTGG---LRGAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 265 LTGG +KG+VVLM+KN L FNDF A+ +D + E LG +T +L+SS D N Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSEN 68 Query: 266 GGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKTT 424 G +GK+G A+LE W+ T + +T GE+ F VTFD+ D G PGA +++ + Sbjct: 69 GSKGKLGKAAHLEDWI--TTITSLTAGESAFKVTFDYETD-FGYPGAFLIRNS 118
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 89.0 bits (219), Expect = 4e-18 Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 5/117 (4%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISST 247 ++ L GGL G H +KG+VV+M+KNAL F D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 248 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D NG +GK A LE +LL L + GE F VTFDW+ ++ GVPGA ++K Sbjct: 61 QSDPANGLQGKHSNPAYLENFLL--TLTPLAAGETAFGVTFDWN-EEFGVPGAFVIK 114
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 80.5 bits (197), Expect = 2e-15 Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 5/117 (4%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISST 247 ++ +T GL G H +KG+VV+M KN L F D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 248 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 D NG +GK A LE L T P E F VTFDW+ ++ GVPGA I+K Sbjct: 61 QGDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGVTFDWN-EEFGVPGAFIIK 115
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 80.5 bits (197), Expect = 2e-15 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Frame = +2 Query: 74 VGGIVSDLTGGLRGA----HLKGSVVLMRKNALAFNDFGATVMDGVTELLGR--GVTCQL 235 V G LTG + A ++G+ VL++K+ L DF A+++DGV +LG GV +L Sbjct: 3 VQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRL 62 Query: 236 ISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 +S+T D +NGGRGK+G A+LE+ L + GE+ F V F+W + G+PGA++V Sbjct: 63 VSATARDPSNGGRGKLGKPAHLEE--LVVTMKSTAAGESVFRVAFEWD-ESQGIPGAVVV 119
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 75.1 bits (183), Expect = 6e-14 Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 19/128 (14%) Frame = +2 Query: 92 DLTGGLRGAH-LKGSVVLMRKNALAFN--------------DFGATV----MDGVTELLG 214 ++TG L H ++G+VVLMRKN L FN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 215 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLG 394 R V+ QLIS+T D N G+GKVG + LE L +LP + GE+ F + F+W ++G Sbjct: 64 RSVSLQLISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGESAFNIHFEWD-HEMG 118 Query: 395 VPGAIIVK 418 +PGA +K Sbjct: 119 IPGAFYIK 126
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 73.2 bits (178), Expect = 2e-13 Identities = 44/102 (43%), Positives = 62/102 (60%) Frame = +2 Query: 113 GAHLKGSVVLMRKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAE 292 G +KG+VVLM KN L N G+ V D + LGR V+ QLIS+T D + G+GKVG + Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKD 61 Query: 293 ANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 LE + T+LP + GE+ F + F+W +G+PGA +K Sbjct: 62 TFLEG--INTSLPTLGAGESAFNIHFEWD-GSMGIPGAFYIK 100
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 72.8 bits (177), Expect = 3e-13 Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 19/137 (13%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALAFNDFG------------------ATV 187 MF V G+ L G G H +KG+VVLMRKN L FN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 188 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVT 367 +D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE+ F + Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGESAFNIQ 114 Query: 368 FDWSVDKLGVPGAIIVK 418 F+W + +G+PGA +K Sbjct: 115 FEWD-ESMGIPGAFYIK 130
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 71.6 bits (174), Expect = 7e-13 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 14/124 (11%) Frame = +2 Query: 89 SDLTGGL-RGAHLKGSVVLMRKNALAFN-------------DFGATVMDGVTELLGRGVT 226 S +TG L RG +KG+VVLMRKN L N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 227 CQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGA 406 QLIS+T D G+GK+G LE + ++LP + G++ F + F+W D +G+PGA Sbjct: 63 LQLISATKPDAT--GKGKLGKATFLEG--IISSLPTLGAGQSAFKIHFEWD-DDMGIPGA 117 Query: 407 IIVK 418 +K Sbjct: 118 FYIK 121
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 70.5 bits (171), Expect = 2e-12 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 15/123 (12%) Frame = +2 Query: 95 LTGGL--RGAHLKGSVVLMRKNALAFN-------------DFGATVMDGVTELLGRGVTC 229 + GGL RG +KG+VVLMRKN L N D + +D +T LGR V+ Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSL 60 Query: 230 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 409 QLIS+T D N G+GK+G LE + T+LP + G++ F + F+W D G+ GA Sbjct: 61 QLISATKADAN--GKGKLGKATFLEG--IITSLPTLGAGQSAFKINFEWD-DGSGILGAF 115 Query: 410 IVK 418 +K Sbjct: 116 YIK 118
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 65.1 bits (157), Expect = 7e-11 Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 22/125 (17%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALAFNDFGAT----------------------VMDGVTELLGRGV 223 +G +KG+VVLM KN L FN + V+D T LGR + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 224 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 403 + QLIS+T D G GKVG E LE+ LPT LP + ++ F++ F+W G+PG Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSIFFEWDA-SFGIPG 121 Query: 404 AIIVK 418 A +K Sbjct: 122 AFYIK 126
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 62.0 bits (149), Expect = 6e-10 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 22/125 (17%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALAFNDFGAT----------------------VMDGVTELLGRGV 223 RG +KG+VVLM KN FN+F +T ++DG T + R + Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNI 66 Query: 224 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 403 QLIS+T D G GKVG + LE+ L +LP + ++ F V F+W + G+P Sbjct: 67 AIQLISATKTD--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNVYFEWD-ENFGIPE 121 Query: 404 AIIVK 418 A +K Sbjct: 122 AFYIK 126
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 61.6 bits (148), Expect = 7e-10 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 20/123 (16%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALAFN--------------------DFGATVMDGVTELLGRGVTC 229 RG LKG+V+LM+KN L N +++D T LGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 230 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 409 +LIS+T D + G+GKV EA LE L T++P + ++ F+V F+W +G PGA Sbjct: 68 RLISATVADAS--GKGKVSKEAFLEGLL--TSIPTLGDKQSAFSVHFEWD-SNMGTPGAF 122 Query: 410 IVK 418 ++ Sbjct: 123 YIE 125
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 59.7 bits (143), Expect = 3e-09 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 13/118 (11%) Frame = +2 Query: 104 GLRGAHLKGSVVLMRKNALAFND-------------FGATVMDGVTELLGRGVTCQLISS 244 G +G +KG++V+M+KN L N F + +D +T ++ QLIS+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISA 63 Query: 245 TNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 418 T D GG+GK+G NL + LP + GE + V F+W D G+PGA +K Sbjct: 64 TKAD---GGKGKIGKSTNLRGKI---TLPTLGAGEQAYDVNFEWDSD-FGIPGAFYIK 114
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 35.0 bits (79), Expect = 0.074 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = -3 Query: 273 RPPLLWSTLVELMSWQVTPRPRSSVT-----PSMTVAPKSLKASAFLRMRTTEPLRWAPR 109 R P L++ L S PRPRS+ PS AP + + R+ PL W P+ Sbjct: 228 RSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQ 287 Query: 108 RPPVRSLTMPPTP 70 R ++L+ PPTP Sbjct: 288 R---QTLSRPPTP 297
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 33.5 bits (75), Expect = 0.21 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -3 Query: 318 GRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMR 139 G+ + R SAP+ + + + ++++S RS +PS+ +SLK+ R Sbjct: 374 GKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGR 433 Query: 138 TTEPLRWAPR-RPPVR 94 T +P R+APR PPVR Sbjct: 434 TFDP-RFAPRGSPPVR 448
>UL14_EHV1V (P84404) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 1.4 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 184 GGAEVVEGERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>UL14_EHV1B (P28949) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 1.4 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 184 GGAEVVEGERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>PROML_BRARE (Q9W735) Prominin-like protein (Fragment)| Length = 713 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +2 Query: 146 RKNALAFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 325 RKNA F DF T++ T ++ GV C ++ N+ G + L+ +N Sbjct: 144 RKNADCFEDFLTTLLLTTTFIITAGVLCAYAANQNLSSQLKGMRR----------LVKSN 193 Query: 326 LPFITTGENKFAVTFDWSVDKLG 394 L + T N+ D+ + + G Sbjct: 194 LKDLHTFANQTPAQIDYLISRYG 216
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 30.4 bits (67), Expect = 1.8 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -2 Query: 187 DGGAEVVEGERVLAHEDDG-----ALEVGAPEAPRQVAH-DAADAKHLRSISG 47 DGGA V+ ER A +D+G E G+PE + H D D KH RS SG Sbjct: 15 DGGATPVQDERDSASDDEGNEREQRSEPGSPERQSEDEHSDIEDNKH-RSDSG 66
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 140 LMRKNALAFNDFGATVMDGVTELLGRGVTCQLISST 247 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -3 Query: 309 HCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTE 130 H S P+ P P L ST+ + + V ++S TP A ++S + T Sbjct: 128 HTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTA 187 Query: 129 PLRWAPRRPP 100 P+ AP PP Sbjct: 188 PVTEAPTSPP 197
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.0 bits (66), Expect = 2.4 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -3 Query: 285 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPL-RWAPR 109 PT + PL E+ TP P S P APK +KA A L + P +P Sbjct: 1245 PTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPA 1304 Query: 108 RPPVRSLTMPP 76 R P +L PP Sbjct: 1305 RQPPAALAKPP 1315
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = -3 Query: 408 MAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSW 229 +APGTP + ++S++T + HCS + P P + WS L + W Sbjct: 2528 VAPGTPQVQVEESELT--------LEAGHTATLHCSATGNPP----PTIHWSKLRAPLPW 2575 Query: 228 Q 226 Q Sbjct: 2576 Q 2576
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 29.6 bits (65), Expect = 3.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 222 TPRPRSSVTPSMTVAPKSLKASAFLRMRTT 133 TP P S +PS+ +L+ S F+RM++T Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKST 270
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 219 PRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPRRPPVRS 91 P P SS TP++ V P + A+ L +T+P P+ PV S Sbjct: 1026 PPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYS 1068
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -2 Query: 187 DGGAEVVEGERVLAHEDDG---ALEVGAPEAPRQVAH-DAADAKH 65 DGGA V+ ER A +D+G E G+PE + H D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.6 bits (65), Expect = 3.1 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT----PSMTVAPKSLKASAFLRMRTTEPLRWA 115 T P PP + +T + TP P ++ T P+ T +P + TT P Sbjct: 1584 TTPSPPTITTTTPPPTT---TPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTT 1640 Query: 114 PRRPPVRSLTMPPT 73 P PP + T PPT Sbjct: 1641 PSPPPTTTTTPPPT 1654 Score = 29.6 bits (65), Expect = 3.1 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKASAFLRMRTTEPLRWAPR 109 T P PP M+ +TP P S+ T P+ T +P + + T P P Sbjct: 1498 TTPSPP---------MTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1547 Query: 108 RPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1548 TPPTSTTTLPPT 1559 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKASAFLRMRTTEPLRWAPR 109 T P PP+ +T + TP P ++ P+ T +P + + T P P Sbjct: 1452 TTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPI 1508 Query: 108 RPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1509 TPPASTTTLPPT 1520
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -3 Query: 285 PTFPRP-PLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPR 109 P P+P P ++ + S P P++S P+ T +PK T+P + Sbjct: 84 PATPKPTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKP---------PATKPPTYPTP 134 Query: 108 RPPVRSLTMPPTPNIF 61 +PP T PPTP ++ Sbjct: 135 KPPA---TKPPTPPVY 147
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 29.3 bits (64), Expect = 4.0 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -3 Query: 288 APTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPR 109 AP PP + + V M V +P SSV P+ T +L S P AP+ Sbjct: 1480 APVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPA-TAPSSTLPPSQSSFAHVPSPAPPAPQ 1538 Query: 108 RPPVRSLTMPPTPN 67 P +L+ P N Sbjct: 1539 HPSAAALSSAPADN 1552
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 29.3 bits (64), Expect = 4.0 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 225 VTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNI 64 V P P S +PS AP L +S + ++ W R PP + +PP P+I Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSP---WVQRTPP--PIPIPPPPSI 611
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -3 Query: 420 VLTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFA-SAPTFPRPPL 262 +L MA G P + T +TA LF + + F SH S P FP P L Sbjct: 201 MLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSL 254
>PE55_LUCCU (Q95UE8) Peritrophin-55 precursor| Length = 220 Score = 28.9 bits (63), Expect = 5.3 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Frame = -3 Query: 306 CSRFASAPTFPR---------PPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASA 154 C F APT PL+ T + + TP S TP +T AP S + Sbjct: 84 CDNFIPAPTCEYLKQTTDVECVPLVKPTTAAPTTLKTTP---SKTTPIVTTAPPSTPVPS 140 Query: 153 FLRMRTTEPLRWAPRRPPVRSLTMPPTP 70 + +P +PP + T+ P+P Sbjct: 141 TIVTNKPDPTTPKTTKPPKVTTTVNPSP 168
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 115 APEAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 222 TPRPRSSVTPSMTVAPKSLKASAFLRMRTT 133 TP P + +PS+ +L+ S F+RM++T Sbjct: 246 TPEPVETTSPSLLTTDNTLERSFFIRMKST 275
>SIPD_SALTY (Q56026) Cell invasion protein sipD (Salmonella invasion protein D)| Length = 343 Score = 28.5 bits (62), Expect = 6.9 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = +2 Query: 230 QLISSTNVDHNNGGRG-KVGAEANLEQWLLPTNLP--FITTGENKFAVTFDWS------- 379 Q+ S+T + G G KV EA QWL NLP + + + + VT D + Sbjct: 207 QINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQ 266 Query: 380 -VDKLGVPG 403 +D LG PG Sbjct: 267 DIDGLGAPG 275
>TLP_PRUAV (P50694) Thaumatin-like protein precursor| Length = 245 Score = 28.5 bits (62), Expect = 6.9 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -3 Query: 411 MMAPGT------PSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 289 M+ PGT P LST S+ + L +PV NGRF R+ CS AS Sbjct: 35 MVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 85
>GLGC_ERWCT (Q6CZK2) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 425 Score = 28.1 bits (61), Expect = 9.0 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Frame = +2 Query: 59 AKMFGVGGIVSDLTGGLRGAHLKGSVVLMRKNALAFN------DFGAT--VMDGVTELLG 214 A+ + + L GG RG LKG L K A+ F DF + + G+ + Sbjct: 13 ARQLPLKSVALILAGG-RGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRI-- 69 Query: 215 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFIT 340 GV Q S T V H G + AE N LLP + T Sbjct: 70 -GVITQYQSHTLVQHIQRGWSFLNAEMNEFVDLLPAQQRYST 110
>PRP45_EMENI (Q5AU50) Pre-mRNA-splicing factor prp45 (Pre-mRNA-processing| protein 45) Length = 583 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 5 GSTTAS*LSKRATLPRDRAKMFGVGGIVSDLTGGLRGAHLK 127 G+ A S +D A FG+ +++D+TGG GA K Sbjct: 520 GAADAEERSGPVQFEKDTADPFGIDSMIADVTGGAGGAGQK 560
>TLP2_PRUPE (P83335) Thaumatin-like protein 2 precursor (PpAZ8)| Length = 242 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -3 Query: 399 GTPSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 289 G P LST S+ + L +PV +GRF R+ CS AS Sbjct: 42 GNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDAS 82
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = -3 Query: 273 RPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPRRPPVR 94 RPP L + + +M + P P ++ T + T A S +A + +++ + L+ P Sbjct: 101 RPPGLPNPMQTIMPANMRPSPTATTTATTTAAAASTTTAATVALQSNDKLQ---ALTPPM 157 Query: 93 SLTMPPTP 70 +T P +P Sbjct: 158 DVTPPKSP 165
>SYH_BURMA (Q62JW5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 446 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%) Frame = +2 Query: 299 LEQWLLPTNLPF-----ITTGENKFAVT-FDWSVDKLGVPGAI 409 L+Q L NLPF + G + + +T F+W DKLG G + Sbjct: 246 LQQLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTV 288
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.1 bits (61), Expect = 9.0 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -3 Query: 285 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKASAFLRMRTTEPLRWAPRR 106 P PRPP+ ++T +S P P VT S+ P S ++ L + L PR Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSL---PISTPPTSSLPLPPPLSLPPPPRP 1809 Query: 105 PPVRSLTMPPTPNI 64 P R PP+ +I Sbjct: 1810 PAPRLFPQPPSTSI 1823 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,117,773 Number of Sequences: 219361 Number of extensions: 824465 Number of successful extensions: 3541 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 3369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3505 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
