ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55c07 |
|---|---|
| Clone Library Name | barley_pub |
>SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4)| Length = 1053 Score = 33.5 bits (75), Expect = 0.31 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = -3 Query: 199 GKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGF-GAGTPEPSPQS 59 G P PGPSP N P A GF G+GTPEP ++ Sbjct: 501 GSLPGDLQPGPSPESEGGPTLPGVGPNYNSPRAGGFQGSGTPEPGSET 548
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -3 Query: 175 PGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 8 P SPG ++ PT+ G+ +P SP S ++S S PTS AY Sbjct: 1539 PSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1594 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -3 Query: 175 PGPSPGRHAATXXXXXXXXSNP---PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 8 PG SP A + ++P PT+ + +P SP S S+S + S PTS AY Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1643 Score = 29.6 bits (65), Expect = 4.4 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Frame = -3 Query: 229 TSSESTVSCSGKAPEGAIPGPS-PGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 53 TS + + G +P PS PG + S PT+ + +P SP S S Sbjct: 1562 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1621 Query: 52 FSRSYGSVLPTSLAY 8 +S + S PTS +Y Sbjct: 1622 YSPTSPSYSPTSPSY 1636 Score = 28.9 bits (63), Expect = 7.6 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = -3 Query: 229 TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 53 TS + S G +P P SP + S PT+ + +P SP S S Sbjct: 1576 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1635 Query: 52 FSRSYGSVLPTSLAY 8 +S + + PTS AY Sbjct: 1636 YSPTSPAYSPTSPAY 1650
>RAD17_ARATH (Q9MBA3) Cell cycle checkpoint protein RAD17 (AtRAD17) (Radiation| sensitive 17) Length = 599 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = -2 Query: 191 SRRGDSRSVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQSSEPILFPKLRIRFADF 18 S R +++S PRS+ G +PR S+R R A + L K+R+ F DF Sbjct: 21 SSRSNAKSKPRSSAGTATNPRA-------SKRARLSGASATQEDSSLVDKIRLSFEDF 71
>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)| Length = 1174 Score = 31.2 bits (69), Expect = 1.5 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%) Frame = -3 Query: 244 IPLVRTSSESTVSCSGKAPEGAIPGPSP--GRHAATXXXXXXXXSNPPTADGFGAGTPEP 71 + R S +T + S AP G P G + N T G+G + Sbjct: 666 VDAARASYSTTGTASTGAPTSPTSGSRPPSGPRTQSSVAAAAAAMNKATQPGYGRSNTDY 725 Query: 70 SPQSQSFSRSYGSVLPT 20 SPQS RS GS PT Sbjct: 726 SPQS---GRSSGSGYPT 739
>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) (HFH-1l) Length = 400 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/65 (33%), Positives = 27/65 (41%) Frame = -3 Query: 232 RTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 53 R S +TVS SG PE A PGP+ AA +P A E S + Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPAGTPQAAPAARSSPIARSP-------ARQEERSSPASK 263 Query: 52 FSRSY 38 FS S+ Sbjct: 264 FSSSF 268
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 241 PLVRTSSESTVSCSGKAPEGAIPGPSP 161 P V S+E + C G +PE PGP+P Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484
>MSH6_SCHPO (O74502) DNA mismatch repair protein msh6| Length = 1254 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = -3 Query: 223 SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 44 + S V+ + +PE +P SP HA T PP++D F SP S S R Sbjct: 62 NSSNVNKNSSSPERELP-TSPSHHANTEIDSSSSMLPPPSSDPFS------SPLSSSLHR 114 Query: 43 S 41 S Sbjct: 115 S 115
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 109 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 8 PT+ GFG +P SP S ++S + + PTS +Y Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY 1563 Score = 29.3 bits (64), Expect = 5.8 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = -3 Query: 229 TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 53 TS VS G +P P SP + S PT+ + +P SP S S Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1590 Query: 52 FSRSYGSVLPTSLAY 8 +S + S PTS +Y Sbjct: 1591 YSPTSPSYSPTSPSY 1605 Score = 28.9 bits (63), Expect = 7.6 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -3 Query: 199 GKAPEGAIPG---PSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSV 29 G+AP PG SPG + + PT+ + +P SP S S+S + S Sbjct: 1527 GEAPTS--PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584 Query: 28 LPTSLAY 8 PTS +Y Sbjct: 1585 SPTSPSY 1591
>ASH2L_MOUSE (Q91X20) Set1/Ash2 histone methyltransferase complex subunit ASH2| (ASH2-like protein) Length = 623 Score = 30.0 bits (66), Expect = 3.4 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +3 Query: 66 GLGSGVPA-PNPSAVGGXXXXXXXXXXVAACRPGDGPGIAPSGAFP---EHETVDSELVR 233 G G GV A P P A A G+GP AP GA P E E+ D+ LV Sbjct: 7 GPGPGVSAGPGPGAAASATTAEDRETEPVAAGAGEGPSAAP-GAEPSSGEAESGDANLVD 65 Query: 234 TRGI 245 G+ Sbjct: 66 VSGL 69
>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)| Length = 2804 Score = 30.0 bits (66), Expect = 3.4 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -1 Query: 408 MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 229 + R+LA++R PF +++ + T R LG N IA RT AM C + V S Sbjct: 1756 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1805 Query: 228 PVLSRLFHARG 196 +L+RL RG Sbjct: 1806 -ILARLDMQRG 1815
>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1154 Score = 30.0 bits (66), Expect = 3.4 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -3 Query: 217 STVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNP--PTADGFGAGTPEPSP 65 +TV+ +G GA P P+PG AAT P T D G P P P Sbjct: 384 TTVTMTGN---GARPPPAPGAEAATPGSAQATSLPPSSTTVDSSTEGAPPPGP 433
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 30.0 bits (66), Expect = 3.4 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -1 Query: 408 MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 229 + R+LA++R PF +++ + T R LG N IA RT AM C + V S Sbjct: 1750 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1799 Query: 228 PVLSRLFHARG 196 +L+RL RG Sbjct: 1800 -ILARLDMQRG 1809
>LDLR_RABIT (P20063) Low-density lipoprotein receptor (LDL receptor) (Fragment)| Length = 837 Score = 30.0 bits (66), Expect = 3.4 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Frame = +1 Query: 4 QCRQGK--SAKRIRNFGKRI--GSEDWARGSRPRTRRLLADCSSC----SRGESGSPRAD 159 QCR GK S K + + GS++W + T + +D SC +R G + D Sbjct: 20 QCRNGKCISYKWVCDGSSECQDGSDEWEQTCMSLTCK--SDDFSCGGRLNRCIPGHWKCD 77 Query: 160 RGTDRESPLRELSPSMKQSTQNWYGQGESDCLIKTKHCDGPRGC*RNVISAQCS 321 D E EL + K +Q+ + E C+ + CDG C A C+ Sbjct: 78 GQQDCEDGSDELGCAPKTCSQDEFRCAEGACISRLFACDGEPDCPDGSDEASCA 131
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Frame = +1 Query: 13 QGKSAKRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRADRGTDRESPLRE 192 +G S+ + G GS +W G RP+ C +R E+ A G D SP Sbjct: 529 EGASSDSSASTGSHEGSSEW--GGRPQ------GCPGKARAETSQQEASEGGDPASPALS 580 Query: 193 LSPSMKQSTQ-NWYGQG 240 LS Q GQG Sbjct: 581 LSSLRSDDLQAETQGQG 597
>CORIN_MOUSE (Q9Z319) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Low density lipoprotein receptor-related protein 4) Length = 1113 Score = 29.6 bits (65), Expect = 4.4 Identities = 20/68 (29%), Positives = 27/68 (39%) Frame = +1 Query: 142 GSPRADRGTDRESPLRELSPSMKQSTQNWYGQGESDCLIKTKHCDGPRGC*RNVISAQCS 321 GS R D D + E + K+ W CL T CDG C ++ CS Sbjct: 663 GSRRCDGQADCDDDSDEENCGCKERAL-WECPFNKQCLKHTLICDGFPDCPDSMDEKNCS 721 Query: 322 ECQSEEIQ 345 CQ E++ Sbjct: 722 FCQDNELE 729
>SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4| Length = 974 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 170 SVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQSSEPI 54 S P S R +PL+P E LE A G DP A +S+ + Sbjct: 907 SDPGSVRLEPLTPSEVLEYEATEILHDGDDPSANTSDTV 945
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -2 Query: 197 ESSRRGDSRSVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQSS 63 +SSR+ +R S+RG S EQ S R G A SS Sbjct: 351 DSSRQSGTRHAETSSRGQTASSHEQARSSPGERHGSGHQQSADSS 395
>FLID_VIBCH (Q9KQ63) Flagellar hook-associated protein 2 (HAP2) (Filament cap| protein) (Flagellar cap protein) Length = 666 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 194 SSRRGDSRSVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQSSEPILFP 45 S+ G SV SA+ +P +P +QLE +RVR + ++ ++ P Sbjct: 177 SNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAP 226
>VE2_HPV08 (P06422) Regulatory protein E2| Length = 498 Score = 29.3 bits (64), Expect = 5.8 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Frame = +1 Query: 13 QGKSAKRIRNFGK----RIGSEDWARGSRPRTR---RLLADCSSCSRGESGSPRADRGTD 171 + +S R+R G R S + RPR+R R A +S R GSPR R T Sbjct: 274 RSRSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSRGRATATSRRRAGRGSPRRRRSTS 333 Query: 172 RESPLRELSPSMKQSTQNWYGQG 240 R S + + G+G Sbjct: 334 RSPSTNTFKRSQRGGGRRGRGRG 356
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 29.3 bits (64), Expect = 5.8 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -3 Query: 202 SGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLP 23 S +P + P+ G+ + S PT+ + +P SP S S+S + S P Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649 Query: 22 TSLAY 8 TS +Y Sbjct: 1650 TSPSY 1654
>DCP2_ASHGO (Q75BK1) mRNA decapping enzyme 2 (EC 3.-.-.-)| Length = 880 Score = 28.9 bits (63), Expect = 7.6 Identities = 21/60 (35%), Positives = 23/60 (38%) Frame = -3 Query: 241 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 62 PLV + ES S S AP P PS + P A G AG P P PQ Sbjct: 287 PLVFSDDESQASISTSAPTTVPPAPSTANSQSV----------QPIAAGAYAGYPFPFPQ 336
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 109 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 8 PT+ + A +P SP S S+S + S PTS +Y Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY 1634
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -3 Query: 208 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 32 S G P+ P+ ++ T N PT+ + +P SP S S+S + S Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663 Query: 31 VLPTSLAY 8 PTS +Y Sbjct: 1664 YSPTSPSY 1671
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -3 Query: 208 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 32 S G P+ P+ ++ T N PT+ + +P SP S S+S + S Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663 Query: 31 VLPTSLAY 8 PTS +Y Sbjct: 1664 YSPTSPSY 1671
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -3 Query: 208 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 32 S G P+ P+ ++ T N PT+ + +P SP S S+S + S Sbjct: 101 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 160 Query: 31 VLPTSLAY 8 PTS +Y Sbjct: 161 YSPTSPSY 168
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -2 Query: 194 SSRRGDSRSVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQSS 63 S R SRS RS+R D SP+ L ++ R R PR + S Sbjct: 387 SRERRYSRSPKRSSRRDSRSPKRGLHRNRYRDRSDSRSPRREDS 430
>ATPBM_ARATH (P83483) ATP synthase beta chain 1, mitochondrial precursor (EC| 3.6.3.14) Length = 556 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Frame = -3 Query: 238 LVRTSS-ESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 62 L+R+SS S + P +P PSP RHAA + T+ + P +P Sbjct: 10 LLRSSSGRSAAKLGNRNPR--LPSPSPARHAAPCSYLLGRVAEYATSSPASSAAPSSAPA 67 Query: 61 SQSFSRSY 38 ++Y Sbjct: 68 KDEGKKTY 75
>MEI9_DROME (Q24087) Protein mei-9 (Protein meiotic 9)| Length = 961 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 128 EQLEQSANSRRVRGRDPRAQSSEPILFPKLRIRFADFPCL 9 E +++A SR+ G+ P+A P + +R +D PCL Sbjct: 673 EPTDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCL 712
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.5 bits (62), Expect = 9.9 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = -3 Query: 175 PGPSPGRHAATXXXXXXXXSNPPTA---DGFGAGTPEPSPQSQSFSRSYGSVLPT 20 PGP+PG +A + PPT+ G G G P P+P S G+ PT Sbjct: 115 PGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG-PTPTPPPAVTSAPPGAPPPT 168
>NAT6_MOUSE (Q9R123) N-acetyltransferase 6 (EC 2.3.1.-) (Fus-2 protein) (Fusion| 2 protein) Length = 314 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 176 SRSVPRSARGDPLSPREQLEQSANSRRVRGRDPRAQS 66 +++VPRS++G PL P L QS + +P QS Sbjct: 257 AQAVPRSSKGPPLPPPPPLPQSLTASPPPSPEPLPQS 293
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 28.5 bits (62), Expect = 9.9 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = -3 Query: 211 VSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYG 35 VS G +P P SP + S PT+ + +P SP S S+S + Sbjct: 1540 VSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1599 Query: 34 SVLPTSLAY 8 S PTS +Y Sbjct: 1600 SYSPTSPSY 1608
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 28.5 bits (62), Expect = 9.9 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Frame = -3 Query: 190 PEGAIPGPSPGRHAATXXXXXXXXS-----NPPTADGFGAGTPEPSPQSQSFSRSYGSVL 26 PE P P+PG AAT S PP A A P+P+PQ + S GS Sbjct: 29 PEPQQPPPAPGPGAATASAATSAASPGPERRPPPAQ---APAPQPAPQPAP-TPSVGSSF 84 Query: 25 PTSLAYIV 2 +SL+ V Sbjct: 85 FSSLSQAV 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,936,446 Number of Sequences: 219361 Number of extensions: 1651860 Number of successful extensions: 5540 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5488 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
