Clone Information

BLAST Search Result

Clone Name	bastl55c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3	114	1e-25
2	UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1	99	8e-21
3	UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2	96	5e-20
4	UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1	72	6e-13
5	UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)	72	6e-13
6	UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1	70	2e-12
7	UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1	67	2e-11
8	UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)	66	4e-11
9	UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ R...	65	7e-11
10	ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUM...	55	1e-07
11	ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUM...	55	1e-07
12	UBA3_SCHPO (Q09765) NEDD8-activating enzyme E1 catalytic subunit...	39	0.007
13	UBA3_CAEEL (Q19360) NEDD8-activating enzyme E1 catalytic subunit...	36	0.048
14	RHC31_YEAST (Q06624) DNA damage tolerance protein RHC31 (RAD31 h...	36	0.048
15	HESA2_ANAVT (P46048) Protein hesA, vegetative	36	0.048
16	HESA1_ANAVT (P46049) Protein hesA, heterocyst	35	0.081
17	ULA1_CHICK (Q5ZIE6) NEDD8-activating enzyme E1 regulatory subuni...	34	0.18
18	ULA1_DROME (Q9VTE9) NEDD8-activating enzyme E1 regulatory subunit	34	0.24
19	HESA_ANASP (P18500) Protein hesA	33	0.31
20	ULA1_RAT (Q9Z1A5) NEDD8-activating enzyme E1 regulatory subunit ...	33	0.40
21	ULA1_MOUSE (Q8VBW6) NEDD8-activating enzyme E1 regulatory subuni...	33	0.40
22	ULA1_HUMAN (Q13564) NEDD8-activating enzyme E1 regulatory subuni...	33	0.40
23	ULA1_MACFA (Q4R3L6) NEDD8-activating enzyme E1 regulatory subuni...	33	0.40
24	ULA1_ARATH (P42744) NEDD8-activating enzyme E1 regulatory subuni...	33	0.40
25	UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (...	33	0.53
26	UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit...	33	0.53
27	UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit...	33	0.53
28	UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit...	33	0.53
29	MOEB_HAEIN (P45211) Molybdopterin biosynthesis protein moeB	32	0.69
30	RAD31_SCHPO (P79064) DNA damage tolerance protein rad31	32	0.90
31	MOEB_ECOLI (P12282) Molybdopterin biosynthesis protein moeB	32	0.90
32	ULA1_XENLA (Q6NTW6) NEDD8-activating enzyme E1 regulatory subuni...	32	1.2
33	THIF_ECOLI (P30138) Adenylyltransferase thiF (EC 2.7.7.-)	31	1.5
34	HESA_PLEBO (P46037) Protein hesA	31	1.5
35	RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC ...	31	2.0
36	ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUM...	30	2.6
37	UBA3_ARATH (O65041) NEDD8-activating enzyme E1 catalytic subunit...	30	2.6
38	ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUM...	30	2.6
39	YGDL_ECOLI (Q46927) Hypothetical protein ygdL	30	3.4
40	ULA1_BRARE (Q7SXP2) NEDD8-activating enzyme E1 regulatory subuni...	30	3.4
41	UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit...	30	3.4
42	MOC3_ARATH (Q9ZNW0) Molybdenum cofactor synthesis protein 3 (Mol...	30	4.4
43	RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC ...	29	5.8
44	RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC ...	29	5.8
45	RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC ...	29	5.8
46	RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC ...	29	5.8
47	MOEB_SALTY (Q56067) Molybdopterin biosynthesis protein moeB	29	5.8
48	MOCS3_HUMAN (O95396) Molybdenum cofactor synthesis protein 3 (Mo...	29	7.6
49	RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC ...	29	7.6
50	RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC ...	29	7.6
51	RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC ...	29	7.6
52	RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC ...	28	9.9
53	RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC ...	28	9.9
54	RPOC_STRPY (P0C0D9) DNA-directed RNA polymerase beta' chain (EC ...	28	9.9

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score =  114 bits (286), Expect = 1e-25
 Identities = 67/106 (63%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
 Frame = +1

Query: 175 MLPSKRPSXXXXXXXXXXXXXXXXKRP-KLDXXXXXXXXXXXXQEIDEDLHSRQLAVYGR 351
           MLPSKRPS                    +              QEIDEDLHSRQLAVYGR
Sbjct: 1   MLPSKRPSDAAAGDENGRGGDARGPGSGRRRARAAAGAVTAAPQEIDEDLHSRQLAVYGR 60

Query: 352 ETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD---VKMW 480
           ETMRRLFASDVLVSGLNGLGAE AKNLALAGVKSVTIHD   VKMW
Sbjct: 61  ETMRRLFASDVLVSGLNGLGAEIAKNLALAGVKSVTIHDVKTVKMW 106



 Score = 33.1 bits (74), Expect = 0.40
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +  Q++V+G +  +++  ++  V G   LG E  KNLAL GV
Sbjct: 448 YDAQVSVFGSKLQKKMEEANTFVVGSGALGCEFLKNLALMGV 489

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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 98.6 bits (244), Expect = 8e-21
 Identities = 50/62 (80%), Positives = 55/62 (88%), Gaps = 3/62 (4%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD---VK 474
           EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL GLGAE AKNL LAGVKSVT+HD   V+
Sbjct: 42  EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVE 101

Query: 475 MW 480
           +W
Sbjct: 102 LW 103



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +  Q++V+G +   +L  + + + G   LG E  KNLAL G+
Sbjct: 445 YDAQISVFGSKLQNKLEEAKIFMVGSGALGCEFLKNLALMGI 486

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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 49/62 (79%), Positives = 54/62 (87%), Gaps = 3/62 (4%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD---VK 474
           EIDEDLHSRQLAVYGRETM+ LF S+VLVSGL GLGAE AKNL LAGVKSVT+HD   V+
Sbjct: 42  EIDEDLHSRQLAVYGRETMKPLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVE 101

Query: 475 MW 480
           +W
Sbjct: 102 LW 103



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +  Q++V+G     +L  + + + G   LG E  KNLAL G+
Sbjct: 445 YDAQISVFGSTLQNKLEEAKIFMVGSGALGCEFLKNLALMGI 486

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>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1|
          Length = 1058

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 36/55 (65%), Positives = 42/55 (76%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +IDE L+SRQL V G E M+RL  S VLVSGL GLG E AKN+ L GVK+VT+HD
Sbjct: 49  DIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHD 103

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>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)|
          Length = 1058

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 36/55 (65%), Positives = 42/55 (76%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +IDE L+SRQL V G E M+RL  S VLVSGL GLG E AKN+ L GVK+VT+HD
Sbjct: 49  DIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHD 103

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>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1|
          Length = 1058

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 35/55 (63%), Positives = 41/55 (74%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +IDE L+SRQL V G E M+ L  S VLVSGL GLG E AKN+ L GVK+VT+HD
Sbjct: 49  DIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHD 103

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>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           EIDE L+SRQL V G+E M ++  S+VL+ GL GLG E AKN+ LAGVKS+T+ D
Sbjct: 13  EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFD 67

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>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)|
          Length = 1011

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 33/54 (61%), Positives = 41/54 (75%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +DE+L+SRQL V G   M+R+  + VLVSGL GLGAE AKNL L GV S+T+HD
Sbjct: 10  LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQGLGAEVAKNLVLMGVGSLTLHD 63

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>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport|
           protein 3)
          Length = 1012

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 32/54 (59%), Positives = 41/54 (75%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           IDE L+SRQL V G E M+++  S+VL+ G  GLG E AKN+ LAGVKSVT++D
Sbjct: 15  IDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYD 68

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>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating|
           enzyme subunit 1)
          Length = 350

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/49 (55%), Positives = 36/49 (73%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + RQ+ ++G E  +RL AS VL+ G+ GLGAE AKNL LAGVK +T+ D
Sbjct: 23  YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLD 71

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>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating|
           enzyme subunit 1)
          Length = 346

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + RQ+ ++G E  +RL AS VL+ GL GLGAE AKNL LAGVK +T+ D
Sbjct: 19  YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

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>UBA3_SCHPO (Q09765) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme E1 3)
          Length = 444

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 16/40 (40%), Positives = 28/40 (70%)
 Frame = +1

Query: 352 ETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           ET++  F+S +L+ G  GLG E  K+LAL+G + +++ D+
Sbjct: 37  ETLKSAFSSKILIIGAGGLGCEILKDLALSGFRDLSVIDM 76

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>UBA3_CAEEL (Q19360) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3 homolog) (Ectopic
           membrane ruffles in embryo protein 1)
          Length = 430

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 340 VYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           V G E    L  + +LV G  GLG E  KNLAL+G +++ + D+
Sbjct: 31  VPGPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDM 74

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>RHC31_YEAST (Q06624) DNA damage tolerance protein RHC31 (RAD31 homolog)|
          Length = 347

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +1

Query: 301 QEIDED---LHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           +++ ED   L+ RQ+ ++G      + ++ VL+  L  +G+E  K++ L+G+  +TI D 
Sbjct: 6   EKLSEDEIALYDRQIRLWGMTAQANMRSAKVLLINLGAIGSEITKSIVLSGIGHLTILDG 65

Query: 472 KM 477
            M
Sbjct: 66  HM 67

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>HESA2_ANAVT (P46048) Protein hesA, vegetative|
          Length = 265

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +1

Query: 343 YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +G+E  +RL ++ VLV+G+ GLG   A  LA+AGV
Sbjct: 21  FGQEAQQRLKSATVLVTGVGGLGGTAALYLAIAGV 55

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>HESA1_ANAVT (P46049) Protein hesA, heterocyst|
          Length = 267

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 322 HSRQLAV--YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +SRQ+ +  +G    +RL ++ VLV+G+ GLG   A  LA+AGV
Sbjct: 12  YSRQMMLPNFGEAAQKRLKSATVLVTGVGGLGGTAALYLAVAGV 55

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>ULA1_CHICK (Q5ZIE6) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (APP-BP1)
          Length = 535

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + E  + RQL ++G      L ++ V V      G E  KNL L G+ S TI D
Sbjct: 9   LKEQRYDRQLRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVD 62

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>ULA1_DROME (Q9VTE9) NEDD8-activating enzyme E1 regulatory subunit|
          Length = 524

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + RQ+ ++G      L A+ V +  +  +G ETAK L L G+   T+ D
Sbjct: 18  YDRQIRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVAD 66

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>HESA_ANASP (P18500) Protein hesA|
          Length = 252

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 343 YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           +G    +RL ++ VLV+G+ GLG   A  LA+AGV
Sbjct: 6   FGEAAQKRLKSATVLVTGVGGLGGTAALYLAVAGV 40

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>ULA1_RAT (Q9Z1A5) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (Amyloid beta precursor
           protein-binding protein 1, 59 kDa) (APP-BP1)
          Length = 534

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + E  + RQL ++G      L ++ V +      G E  KNL L G+ S TI D
Sbjct: 8   LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61

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>ULA1_MOUSE (Q8VBW6) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (Amyloid beta precursor
           protein-binding protein 1, 59 kDa) (APP-BP1)
          Length = 534

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + E  + RQL ++G      L ++ V +      G E  KNL L G+ S TI D
Sbjct: 8   LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61

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>ULA1_HUMAN (Q13564) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (Amyloid beta precursor
           protein-binding protein 1, 59 kDa) (APP-BP1)
           (Protooncogene protein 1) (HPP1)
          Length = 534

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + E  + RQL ++G      L ++ V +      G E  KNL L G+ S TI D
Sbjct: 8   LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61

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>ULA1_MACFA (Q4R3L6) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (Amyloid beta precursor
           protein-binding protein 1, 59 kDa) (APP-BP1)
          Length = 510

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + E  + RQL ++G      L ++ V +      G E  KNL L G+ S TI D
Sbjct: 8   LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61

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>ULA1_ARATH (P42744) NEDD8-activating enzyme E1 regulatory subunit|
           (Auxin-resistance protein AXR1)
          Length = 540

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 322 HSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           + RQL ++G      L  + + +      G+E  KNL L GV S+T+ D
Sbjct: 24  YDRQLRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVD 72

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>UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           VLV G  GLG E  KNLAL+G + + + D+
Sbjct: 72  VLVIGAGGLGCELLKNLALSGFRQIHVIDM 101

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>UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           VLV G  GLG E  KNLAL+G + + + D+
Sbjct: 72  VLVIGAGGLGCELLKNLALSGFRQIHVIDM 101

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>UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 463

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           VLV G  GLG E  KNLAL+G + + + D+
Sbjct: 72  VLVIGAGGLGCELLKNLALSGFRQIHVIDM 101

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>UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 463

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           VLV G  GLG E  KNLAL+G + + + D+
Sbjct: 72  VLVIGAGGLGCELLKNLALSGFRQIHVIDM 101

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>MOEB_HAEIN (P45211) Molybdopterin biosynthesis protein moeB|
          Length = 243

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 364 RLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +L AS +L+ GL GLG   ++ LA AGV ++T+ D
Sbjct: 28  KLKASKMLIVGLGGLGCAASQYLAAAGVGNLTLLD 62

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>RAD31_SCHPO (P79064) DNA damage tolerance protein rad31|
          Length = 307

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 319 LHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           L+ RQ+ ++G    + L  S VL+   + L  E AKNL L+G+  + + D
Sbjct: 13  LYDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVLSGIGKLCVLD 62

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>MOEB_ECOLI (P12282) Molybdopterin biosynthesis protein moeB|
          Length = 249

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = +1

Query: 316 DLHSRQLAVYGRETMRRLFASD---------VLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +L  +++  Y R+ + R F  D         VL+ GL GLG   ++ LA AGV ++T+ D
Sbjct: 3   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62

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>ULA1_XENLA (Q6NTW6) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (APP-BP1)
          Length = 533

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 307 IDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           I E  + RQL ++G      L ++ V +      G E  KNL L G+   TI D
Sbjct: 7   IKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGLFTIVD 60

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>THIF_ECOLI (P30138) Adenylyltransferase thiF (EC 2.7.7.-)|
          Length = 251

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 322 HSRQLAV--YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +SRQ+ +     +  ++L  S VL+ GL GLG   A  LA AGV ++ + D
Sbjct: 9   YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLAD 59

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>HESA_PLEBO (P46037) Protein hesA|
          Length = 277

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 304 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGV 447
           E++       L  +  +  RRL +   LV+G+ GLG   A  LA+AG+
Sbjct: 8   ELERYRRQMMLPGFDEDAQRRLKSFTALVTGVGGLGGTAALYLAVAGI 55

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>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1206

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 304  EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            E  E L+ R +     +T+R     +VLV     +  +TAK +  AGV+SVTI  V
Sbjct: 834  ETIEGLYDRLVGRVAFKTVRHPETDEVLVRRGELMNEDTAKQIVDAGVESVTIRSV 889

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>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 349 RETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           RE    +    VLV G  G+G E  KNL L G   + + D+
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDL 49

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>UBA3_ARATH (O65041) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (RUB-activating enzyme) (Ubiquitin activating enzyme
           E1-like protein)
          Length = 454

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           +LV G  GLG E  K+LAL+G +++ + D+
Sbjct: 49  ILVIGAGGLGCELLKDLALSGFRNLEVIDM 78

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>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 638

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 349 RETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           RE    +    VLV G  G+G E  KNL L G   + + D+
Sbjct: 9   RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDL 49

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>YGDL_ECOLI (Q46927) Hypothetical protein ygdL|
          Length = 268

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 340 VYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           +YG + ++    + + V G+ G+G+  A+ LA  G+ ++T+ D+
Sbjct: 19  LYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62

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>ULA1_BRARE (Q7SXP2) NEDD8-activating enzyme E1 regulatory subunit (Amyloid|
           protein-binding protein 1) (APP-BP1)
          Length = 533

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 313 EDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           E  + RQL ++G      L  + V +      G E  KNL L G+ + TI D
Sbjct: 9   EQRYDRQLRLWGDHGQEALENAHVCLINATASGTEILKNLVLPGIGAFTIVD 60

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>UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 VLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           +LV G  GLG E  K+LAL+G + + + D+
Sbjct: 71  ILVIGAGGLGCELLKDLALSGFRHIHVVDM 100

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>MOC3_ARATH (Q9ZNW0) Molybdenum cofactor synthesis protein 3 (Molybdopterin|
           synthase sulfurylase) (MPT synthase sulfurylase)
          Length = 464

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 322 HSRQLAV--YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTI--HDV 471
           +SRQL +  +  E    L  S VLV G  GLG+     LA  GV  + I  HDV
Sbjct: 72  YSRQLLLPSFAVEGQSNLLKSSVLVIGAGGLGSPALLYLAACGVGQLGIIDHDV 125

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>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1213

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 890

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>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1213

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 890

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>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1213

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 890

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>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1213

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 890

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>MOEB_SALTY (Q56067) Molybdopterin biosynthesis protein moeB|
          Length = 249

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 322 HSRQLAVYGR--ETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           ++RQ+ + G   E    L  + VLV GL GLG    + LA AGV  +T+ D
Sbjct: 12  YNRQIILRGFDFEGQEALKDARVLVVGLGGLGCAATQYLAGAGVGQLTLLD 62

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>MOCS3_HUMAN (O95396) Molybdenum cofactor synthesis protein 3 (Molybdopterin|
           synthase sulfurylase) (MPT synthase sulfurylase)
          Length = 460

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 322 HSRQLAV--YGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHD 468
           +SRQL +   G     RL  + VL+ G  GLG   A+ LA AGV  + + D
Sbjct: 63  YSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVD 113

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>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1216

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R +  Y +++++     ++LV     +  + A  +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLIGRYTKKSIKHPETGEILVGADTLITEDMAAKVVKAGVEEVTIRSV 890

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>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1216

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R +  Y +++++     ++LV     +  + A  +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLIGRYTKKSIKHPETGEILVGADTLITEDMAAKVVKAGVEEVTIRSV 890

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>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1216

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R +  Y +++++     ++LV     +  + A  +  AGV+ VTI  V
Sbjct: 834  KEVTETLEERLIGRYTKKSIKHPETGEILVGADTLITEDMAAKVVKAGVEEVTIRSV 890

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>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1209

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R +  Y ++++R     +++ S    +  + A  +A AGV  VTI  V
Sbjct: 834  KEVTETLEERLVGRYTKKSVRHPETGEIIASPDTLITEDMAHYIAEAGVSEVTIRSV 890

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>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1207

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301  QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
            +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 834  KEVTETLEVRLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 890

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>RPOC_STRPY (P0C0D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit) (Fragment)
          Length = 989

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301 QEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAETAKNLALAGVKSVTIHDV 471
           +E+ E L  R    Y R++++     +VL+     +  + A+ +  AGV+ VTI  V
Sbjct: 767 KEVTETLEVRLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSV 823


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,988,790
Number of Sequences: 219361
Number of extensions: 478747
Number of successful extensions: 2412
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2410
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result