ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111501.1| Zea mays CL31834_1 mRNA sequence 70 5e-09
2ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
3ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
4dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
5dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
6dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
8dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
9gb|AY702899.1| Tetraodon nigroviridis XK-related protein 2b (XRG... 44 0.30
10gb|AY702898.1| Tetraodon nigroviridis XK-related protein 2a (XRG... 44 0.30
11ref|NM_126078.1| Arabidopsis thaliana unknown protein AT5G66800 ... 42 1.2
12emb|AL591437.6| Human DNA sequence from clone RP13-223M5 on chro... 42 1.2
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14gb|AY183459.1| Lupinus angustifolius putative pectin methylester... 42 1.2
15gb|AY209001.1| Lupinus angustifolius pectin methylesterase mRNA,... 42 1.2
16gb|AC007220.4|AC007220 Homo sapiens chromosome 16 clone RP11-396... 42 1.2
17gb|AY084283.1| Arabidopsis thaliana clone 102248 mRNA, complete ... 42 1.2
18dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.2
20emb|AL844576.9| Mouse DNA sequence from clone RP23-233M15 on chr... 42 1.2
21ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
22gb|AC108840.13| Mus musculus chromosome 1, clone RP23-348P7, com... 40 4.7
23gb|AY534503.1| Blasicrura summersi cytochrome oxidase subunit 1 ... 40 4.7
24gb|AY534501.1| Melicerona felina cytochrome oxidase subunit 1 (C... 40 4.7
25gb|AY534456.1| Pseudozonaria nigropunctata cytochrome oxidase su... 40 4.7
26ref|NM_001032710.1| Takifugu rubripes XK-related protein 2 (LOC4... 40 4.7
27gb|DQ483819.1| Gymnogyps californianus clone 242F microsatellite... 40 4.7
28gb|DQ483551.1| Gymnogyps californianus clone 110D microsatellite... 40 4.7
29gb|DQ483980.1| Gymnogyps californianus clone 146G microsatellite... 40 4.7
30gb|DQ483424.1| Gymnogyps californianus clone 127H microsatellite... 40 4.7
31gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, comple... 40 4.7
32gb|AC117204.3| Mus musculus BAC clone RP23-256L23 from 18, compl... 40 4.7
33gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, co... 40 4.7
34emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chr... 40 4.7
35gb|AY161830.1| Eclogavena dayritiana isolate BJLinnSoc_218 cytoc... 40 4.7
36gb|AY161829.1| Blasicrura interrupta isolate BJLinnSoc_217 cytoc... 40 4.7
37gb|AY161828.1| Blasicrura pallidula pallidula isolate BJLinnSoc_... 40 4.7
38emb|AL031347.1|HS596H12 Human DNA sequence from clone RP4-596H12... 40 4.7
39dbj|AK125876.1| Homo sapiens cDNA FLJ43888 fis, clone TESTI40093... 40 4.7
40gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 ma... 40 4.7
41emb|BX276126.11| Zebrafish DNA sequence from clone CH211-232L22 ... 40 4.7
42gb|AY613954.1| Takifugu rubripes XK-related protein 2b mRNA, com... 40 4.7
43dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
45gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, comple... 40 4.7
46dbj|AB125312.1| Nannochloris bacillaris genes for hypothetical p... 40 4.7
47gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell ... 40 4.7
48dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
49dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
50gb|AY534265.1| Takifugu rubripes XK-related protein 2 mRNA, comp... 40 4.7
51gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Can... 40 4.7
52gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
53gb|DQ207319.1| Blasicrura interrupta haplotype SriLanka_1859 cyt... 40 4.7
54gb|DQ207318.1| Blasicrura interrupta haplotype Phuk_1481 cytochr... 40 4.7
55gb|DQ207317.1| Blasicrura summersi haplotype 2126 cytochrome oxi... 40 4.7
56gb|DQ207315.1| Blasicrura pallidula pallidula haplotype NJava_14... 40 4.7
57gb|DQ207311.1| Eclogavena dayritiana haplotype 1541 cytochrome o... 40 4.7
58gb|DQ207310.1| Eclogavena luchuana haplotype Okinawa_2758 cytoch... 40 4.7
59gb|DQ207302.1| Melicerona felina haplotype Zanz_1197 cytochrome ... 40 4.7
60gb|DQ207301.1| Melicerona felina haplotype Masirah_1738 cytochro... 40 4.7
61emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 40 4.7
62gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, compl... 40 4.7
63gb|U51918.1|PSU51918 Pisum sativum mitochondrial pyruvate dehydr... 40 4.7
64emb|AL683880.7| Mouse DNA sequence from clone RP23-124M9 on chro... 40 4.7
65emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chr... 40 4.7
66emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on ch... 40 4.7

>gb|AY111501.1| Zea mays CL31834_1 mRNA sequence
          Length = 621

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 catgcctgcgttccacgcgtacggagatggcgggtgcctcgtctctgccccggccgagct 298
           |||||||||| || |||| |||||||||| ||||||||||||||| || ||||| |||||
Sbjct: 407 catgcctgcgctctacgcttacggagatgacgggtgcctcgtctcggcgccggctgagct 348

                                  
Query: 299 ttccgggatgttctgccgcggcg 321
             ||||  | |||||||||||||
Sbjct: 347 ggccggactcttctgccgcggcg 325



to top

>ref|XM_464514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2525

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 319
           ||||||||| ||||| ||||| || || ||||| |||||  |||||||||||||||||||
Sbjct: 219 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 278

                
Query: 320 cggcg 324
           |||||
Sbjct: 279 cggcg 283



to top

>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 319
           ||||||||| ||||| ||||| || || ||||| |||||  |||||||||||||||||||
Sbjct: 228 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 287

                
Query: 320 cggcg 324
           |||||
Sbjct: 288 cggcg 292



to top

>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full
           insert sequence
          Length = 2525

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 319
           ||||||||| ||||| ||||| || || ||||| |||||  |||||||||||||||||||
Sbjct: 219 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 278

                
Query: 320 cggcg 324
           |||||
Sbjct: 279 cggcg 283



to top

>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full
           insert sequence
          Length = 6528

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 319
           ||||||||| ||||| ||||| || || ||||| |||||  |||||||||||||||||||
Sbjct: 225 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 284

                
Query: 320 cggcg 324
           |||||
Sbjct: 285 cggcg 289



to top

>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
           insert sequence
          Length = 2981

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 319
           ||||||||| ||||| ||||| || || ||||| |||||  |||||||||||||||||||
Sbjct: 228 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 287

                
Query: 320 cggcg 324
           |||||
Sbjct: 288 cggcg 292



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 263     agatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcggcgg 322
               |||||| ||||| ||||| || || ||||| |||||  ||||||||||||||||||||||
Sbjct: 5630872 agatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcggcgg 5630813

                 
Query: 323     cg 324
               ||
Sbjct: 5630812 cg 5630811



to top

>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 263   agatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcggcgg 322
             |||||| ||||| ||||| || || ||||| |||||  ||||||||||||||||||||||
Sbjct: 58608 agatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcggcgg 58549

               
Query: 323   cg 324
             ||
Sbjct: 58548 cg 58547



to top

>gb|AY702899.1| Tetraodon nigroviridis XK-related protein 2b (XRG2b) mRNA, complete
           cds
          Length = 2083

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 189 cctgctcttcttcttcttccaa 210
           ||||||||||||||||||||||
Sbjct: 895 cctgctcttcttcttcttccaa 916



to top

>gb|AY702898.1| Tetraodon nigroviridis XK-related protein 2a (XRG2a) mRNA, complete
           cds
          Length = 1466

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 189 cctgctcttcttcttcttccaa 210
           ||||||||||||||||||||||
Sbjct: 866 cctgctcttcttcttcttccaa 887



to top

>ref|NM_126078.1| Arabidopsis thaliana unknown protein AT5G66800 mRNA, complete cds
          Length = 960

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 194 tcttcttcttcttccaaggga 214
           |||||||||||||||||||||
Sbjct: 383 tcttcttcttcttccaaggga 403



to top

>emb|AL591437.6| Human DNA sequence from clone RP13-223M5 on chromosome X, complete
             sequence
          Length = 39528

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   tcctgctcttcttcttcttcc 208
             |||||||||||||||||||||
Sbjct: 30422 tcctgctcttcttcttcttcc 30442



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    tcttcttcttcttccaaggga 214
              |||||||||||||||||||||
Sbjct: 361049 tcttcttcttcttccaaggga 361069



to top

>gb|AY183459.1| Lupinus angustifolius putative pectin methylesterase mRNA, complete
           cds
          Length = 1112

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 205 ttccaagggatcccatccttc 225
           |||||||||||||||||||||
Sbjct: 808 ttccaagggatcccatccttc 788



to top

>gb|AY209001.1| Lupinus angustifolius pectin methylesterase mRNA, complete cds
          Length = 1111

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 205 ttccaagggatcccatccttc 225
           |||||||||||||||||||||
Sbjct: 808 ttccaagggatcccatccttc 788



to top

>gb|AC007220.4|AC007220 Homo sapiens chromosome 16 clone RP11-396B14, complete sequence
          Length = 172945

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    tcctgctcttcttcttcttcc 208
              |||||||||||||||||||||
Sbjct: 107215 tcctgctcttcttcttcttcc 107235



to top

>gb|AY084283.1| Arabidopsis thaliana clone 102248 mRNA, complete sequence
          Length = 960

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 194 tcttcttcttcttccaaggga 214
           |||||||||||||||||||||
Sbjct: 383 tcttcttcttcttccaaggga 403



to top

>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0414D03
          Length = 169823

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    tcttcttcttcttccaaggga 214
              |||||||||||||||||||||
Sbjct: 109648 tcttcttcttcttccaaggga 109668



to top

>dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21
          Length = 69850

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 194   tcttcttcttcttccaaggga 214
             |||||||||||||||||||||
Sbjct: 14283 tcttcttcttcttccaaggga 14303



to top

>emb|AL844576.9| Mouse DNA sequence from clone RP23-233M15 on chromosome 2, complete
              sequence
          Length = 114285

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    tcctgctcttcttcttcttcc 208
              |||||||||||||||||||||
Sbjct: 110293 tcctgctcttcttcttcttcc 110273



to top

>ref|NM_187376.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 302  cgggatgttctgccgcggcggcgg 325
            ||||||||||||| ||||||||||
Sbjct: 1140 cgggatgttctgcggcggcggcgg 1163



to top

>gb|AC108840.13| Mus musculus chromosome 1, clone RP23-348P7, complete sequence
          Length = 209336

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 181936 tcctgctcttcttcttcttc 181955



to top

>gb|AY534503.1| Blasicrura summersi cytochrome oxidase subunit 1 (COI) gene,
           partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|AY534501.1| Melicerona felina cytochrome oxidase subunit 1 (COI) gene, partial
           cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|AY534456.1| Pseudozonaria nigropunctata cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 487

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 125 tcctgctcttcttcttcttc 144



to top

>ref|NM_001032710.1| Takifugu rubripes XK-related protein 2 (LOC497080), mRNA
          Length = 1747

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 cctgctcttcttcttcttcc 208
           ||||||||||||||||||||
Sbjct: 978 cctgctcttcttcttcttcc 997



to top

>gb|DQ483819.1| Gymnogyps californianus clone 242F microsatellite sequence
          Length = 551

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 397 tcctgctcttcttcttcttc 378



to top

>gb|DQ483551.1| Gymnogyps californianus clone 110D microsatellite sequence
          Length = 579

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 398 tcctgctcttcttcttcttc 379



to top

>gb|DQ483980.1| Gymnogyps californianus clone 146G microsatellite sequence
          Length = 558

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 162 tcctgctcttcttcttcttc 181



to top

>gb|DQ483424.1| Gymnogyps californianus clone 127H microsatellite sequence
          Length = 1202

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 158 tcctgctcttcttcttcttc 177



to top

>gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, complete sequence
          Length = 210148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 100904 tcctgctcttcttcttcttc 100885



to top

>gb|AC117204.3| Mus musculus BAC clone RP23-256L23 from 18, complete sequence
          Length = 183065

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 88545 tcctgctcttcttcttcttc 88526



to top

>gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, complete sequence
          Length = 244819

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 72954 tcctgctcttcttcttcttc 72935



to top

>emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chromosome 1 Contains the
             3' end of the SNX27 gene for sorting nexin family member
             27, the TNRC4 gene for trinucleotide repeat containing 4,
             five novel genes, a ribosomal protein S11 (RPS11)
             pseudogene, the MRPL9 gene for mitochondrial ribosomal
             protein L9, the OAZ3 gene for ornithine decarboxylase
             antizyme 3, a novel gene (FLJ36032)  the TDRKH gene for
             tudor and KH domain containing, the RORC gene for
             RAR-related orphan receptor C and four CpG islands,
             complete sequence
          Length = 163389

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ttccaagggatcccatcctt 224
             ||||||||||||||||||||
Sbjct: 86254 ttccaagggatcccatcctt 86235



to top

>gb|AY161830.1| Eclogavena dayritiana isolate BJLinnSoc_218 cytochrome oxidase
           subunit I (COI) gene, partial cds; mitochondrial gene
           for mitochondrial product
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|AY161829.1| Blasicrura interrupta isolate BJLinnSoc_217 cytochrome oxidase
           subunit I (COI) gene, partial cds; mitochondrial gene
           for mitochondrial product
          Length = 612

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 250 tcctgctcttcttcttcttc 269



to top

>gb|AY161828.1| Blasicrura pallidula pallidula isolate BJLinnSoc_216 cytochrome
           oxidase subunit I (COI) gene, partial cds; mitochondrial
           gene for mitochondrial product
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>emb|AL031347.1|HS596H12 Human DNA sequence from clone RP4-596H12 on chromosome 6p22.2-22.3,
             complete sequence
          Length = 175555

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 15101 tcctgctcttcttcttcttc 15082



to top

>dbj|AK125876.1| Homo sapiens cDNA FLJ43888 fis, clone TESTI4009306, moderately
           similar to Homo sapiens ornithine decarboxylase antizyme
           3 (OAZ3)
          Length = 3786

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 205 ttccaagggatcccatcctt 224
           ||||||||||||||||||||
Sbjct: 300 ttccaagggatcccatcctt 281



to top

>gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 map mi398, complete
             sequence
          Length = 85214

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctcttcttcttcttccaagg 212
             ||||||||||||||||||||
Sbjct: 34713 ctcttcttcttcttccaagg 34694



to top

>emb|BX276126.11| Zebrafish DNA sequence from clone CH211-232L22 in linkage group 17,
             complete sequence
          Length = 92365

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 81484 tcctgctcttcttcttcttc 81465



to top

>gb|AY613954.1| Takifugu rubripes XK-related protein 2b mRNA, complete cds
          Length = 2171

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 cctgctcttcttcttcttcc 208
           ||||||||||||||||||||
Sbjct: 905 cctgctcttcttcttcttcc 924



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 123304 tcctgctcttcttcttcttc 123285



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 302      cgggatgttctgccgcggcggcgg 325
                ||||||||||||| ||||||||||
Sbjct: 18605239 cgggatgttctgcggcggcggcgg 18605216



to top

>gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, complete cds
          Length = 71512

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   tcctgctcttcttcttcttccaag 211
             |||| |||||||||||||||||||
Sbjct: 43099 tcctcctcttcttcttcttccaag 43076



to top

>dbj|AB125312.1| Nannochloris bacillaris genes for hypothetical protein, DNA
           helicase RecG, thioredoxin-like protein, and NbrbcS1-1
           gene for ribulose-1,5-bisphosphate carboxyase/oxygenase
           small subunit, partial and complete cds
          Length = 11769

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 111 tcctgctcttcttcttcttc 130



to top

>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    tcctgctcttcttcttcttccaag 211
              |||| |||||||||||||||||||
Sbjct: 153429 tcctcctcttcttcttcttccaag 153406



to top

>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1197_D06
          Length = 103844

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   cgggatgttctgccgcggcggcgg 325
             ||||||||||||| ||||||||||
Sbjct: 30293 cgggatgttctgcggcggcggcgg 30270



to top

>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   cgggatgttctgccgcggcggcgg 325
             ||||||||||||| ||||||||||
Sbjct: 57781 cgggatgttctgcggcggcggcgg 57758



to top

>gb|AY534265.1| Takifugu rubripes XK-related protein 2 mRNA, complete cds
          Length = 1747

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 cctgctcttcttcttcttcc 208
           ||||||||||||||||||||
Sbjct: 978 cctgctcttcttcttcttcc 997



to top

>gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 228734

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 73130 tcctgctcttcttcttcttc 73149



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 123304 tcctgctcttcttcttcttc 123285



to top

>gb|DQ207319.1| Blasicrura interrupta haplotype SriLanka_1859 cytochrome oxidase
           subunit I (COI) gene, partial cds; mitochondrial
          Length = 602

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 240 tcctgctcttcttcttcttc 259



to top

>gb|DQ207318.1| Blasicrura interrupta haplotype Phuk_1481 cytochrome oxidase
           subunit I (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207317.1| Blasicrura summersi haplotype 2126 cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207315.1| Blasicrura pallidula pallidula haplotype NJava_1496 cytochrome
           oxidase subunit I (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207311.1| Eclogavena dayritiana haplotype 1541 cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207310.1| Eclogavena luchuana haplotype Okinawa_2758 cytochrome oxidase
           subunit I (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207302.1| Melicerona felina haplotype Zanz_1197 cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>gb|DQ207301.1| Melicerona felina haplotype Masirah_1738 cytochrome oxidase subunit
           I (COI) gene, partial cds; mitochondrial
          Length = 614

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tcctgctcttcttcttcttc 207
           ||||||||||||||||||||
Sbjct: 252 tcctgctcttcttcttcttc 271



to top

>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 123304 tcctgctcttcttcttcttc 123285



to top

>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 41670 tcctgctcttcttcttcttc 41689



to top

>gb|U51918.1|PSU51918 Pisum sativum mitochondrial pyruvate dehydrogenase E1 alpha subunit
           mRNA, complete cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 tcttcttcttcttccaagggatcc 217
           ||||||||||||||||| ||||||
Sbjct: 251 tcttcttcttcttccaacggatcc 274



to top

>emb|AL683880.7| Mouse DNA sequence from clone RP23-124M9 on chromosome 4, complete
              sequence
          Length = 210306

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tcctgctcttcttcttcttc 207
              ||||||||||||||||||||
Sbjct: 185501 tcctgctcttcttcttcttc 185520



to top

>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete
              sequence
          Length = 239847

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    tcctgctcttcttcttcttccaag 211
              |||| |||||||||||||||||||
Sbjct: 187745 tcctcctcttcttcttcttccaag 187722



to top

>emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete
             sequence
          Length = 180239

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tcctgctcttcttcttcttc 207
             ||||||||||||||||||||
Sbjct: 81201 tcctgctcttcttcttcttc 81220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,775,809
Number of Sequences: 3902068
Number of extensions: 2775809
Number of successful extensions: 619436
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 618504
Number of HSP's gapped (non-prelim): 932
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top