ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186453.1| Oryza sativa (japonica cultivar-group), mRNA 236 5e-59
2dbj|AK120764.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 5e-59
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
4dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
5ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcri... 72 2e-09
6ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcri... 72 2e-09
7dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown ... 72 2e-09
8dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.099
9ref|XM_450116.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
10gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC... 42 1.5
11emb|AL139429.8| Human DNA sequence from clone RP11-110K14 on chr... 42 1.5
12gb|AC123710.12| Mus musculus chromosome 5, clone RP23-378C15, co... 42 1.5
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 42 1.5
15dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, co... 40 6.1
17gb|AE006328.1| Lactococcus lactis subsp. lactis IL1403 section 9... 40 6.1
18gb|AC158972.4| Mus musculus chromosome 15, clone RP24-225M16, co... 40 6.1
19emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
20gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.1
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
22gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Canc... 40 6.1
23gb|AC099636.8| Mus musculus chromosome 19, clone RP24-149H13, co... 40 6.1
24gb|AC124632.11| Mus musculus chromosome 19, clone RP23-445I14, c... 40 6.1
25gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, comp... 40 6.1 
>ref|NM_186453.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3222

 Score =  236 bits (119), Expect = 5e-59
 Identities = 218/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 203 agaccttgttctggaagctctatgaaggatttgtgtcttgtttcaaaacaagggtcaata 262
           ||||||| | |||||| |||| | |||||| ||||||||||||| || ||||| ||||||
Sbjct: 52  agaccttctcctggaaactctcttaaggatctgtgtcttgtttccaagcaaggatcaata 111

                                                                       
Query: 263 gctgaagtggaatctgctttggccttgataaaaaagaatggtggaagtattgacggtaga 322
           |||||||| ||||||||||| || ||| | ||||||| ||||||||| ||||| || |||
Sbjct: 112 gctgaagtagaatctgctttagctttgttgaaaaagagtggtggaagcattgatggcaga 171

                                                                       
Query: 323 aatgcatttggccttggtgccctccaccttgcaacatggagaaatcaccttccaatcgtc 382
           ||||  ||||| ||| |||| |||||||||||||| ||||||||||| || ||||| || 
Sbjct: 172 aatgtgtttggtctttgtgctctccaccttgcaacgtggagaaatcatctaccaattgtg 231

                                                                       
Query: 383 aggcggctcctagatgctggtgctaatccagatgcaagggatggagaatctggttggagc 442
           ||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 232 aggaggctcctcgatgctggtgctgatccagatgcaagggatggagaatctggctggagc 291

                      
Query: 443 agcctccacag 453
           ||||| |||||
Sbjct: 292 agcctgcacag 302
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>dbj|AK120764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007H22, full
           insert sequence
          Length = 2832

 Score =  236 bits (119), Expect = 5e-59
 Identities = 218/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 203 agaccttgttctggaagctctatgaaggatttgtgtcttgtttcaaaacaagggtcaata 262
           ||||||| | |||||| |||| | |||||| ||||||||||||| || ||||| ||||||
Sbjct: 562 agaccttctcctggaaactctcttaaggatctgtgtcttgtttccaagcaaggatcaata 621

                                                                       
Query: 263 gctgaagtggaatctgctttggccttgataaaaaagaatggtggaagtattgacggtaga 322
           |||||||| ||||||||||| || ||| | ||||||| ||||||||| ||||| || |||
Sbjct: 622 gctgaagtagaatctgctttagctttgttgaaaaagagtggtggaagcattgatggcaga 681

                                                                       
Query: 323 aatgcatttggccttggtgccctccaccttgcaacatggagaaatcaccttccaatcgtc 382
           ||||  ||||| ||| |||| |||||||||||||| ||||||||||| || ||||| || 
Sbjct: 682 aatgtgtttggtctttgtgctctccaccttgcaacgtggagaaatcatctaccaattgtg 741

                                                                       
Query: 383 aggcggctcctagatgctggtgctaatccagatgcaagggatggagaatctggttggagc 442
           ||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 742 aggaggctcctcgatgctggtgctgatccagatgcaagggatggagaatctggctggagc 801

                      
Query: 443 agcctccacag 453
           ||||| |||||
Sbjct: 802 agcctgcacag 812



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 84  taggacagcatgtgttcttgacg 106
           |||||||||||||||||||||||
Sbjct: 85  taggacagcatgtgttcttgacg 107
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  190 bits (96), Expect = 3e-45
 Identities = 189/220 (85%)
 Strand = Plus / Minus

                                                                           
Query: 203     agaccttgttctggaagctctatgaaggatttgtgtcttgtttcaaaacaagggtcaata 262
               ||||||| | |||||| |||| | |||||| ||||||||||||| || ||||| ||||||
Sbjct: 3529816 agaccttctcctggaaactctcttaaggatctgtgtcttgtttccaagcaaggatcaata 3529757

                                                                           
Query: 263     gctgaagtggaatctgctttggccttgataaaaaagaatggtggaagtattgacggtaga 322
               |||||||| ||||||||||| || ||| | ||||||| ||||||||| ||||| || |||
Sbjct: 3529756 gctgaagtagaatctgctttagctttgttgaaaaagagtggtggaagcattgatggcaga 3529697

                                                                           
Query: 323     aatgcatttggccttggtgccctccaccttgcaacatggagaaatcaccttccaatcgtc 382
               ||||  ||||| ||| |||| |||||||||||||| ||||||||||| || ||||| || 
Sbjct: 3529696 aatgtgtttggtctttgtgctctccaccttgcaacgtggagaaatcatctaccaattgtg 3529637

                                                       
Query: 383     aggcggctcctagatgctggtgctaatccagatgcaaggg 422
               ||| ||||||| |||||||||||| |||||||||||||||
Sbjct: 3529636 aggaggctcctcgatgctggtgctgatccagatgcaaggg 3529597



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 421     ggatggagaatctggttggagcagcctccacag 453
               ||||||||||||||| ||||||||||| |||||
Sbjct: 3529161 ggatggagaatctggctggagcagcctgcacag 3529129



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 1       agcatattccacgccgggatcccctcccccc 31
               |||||||||| |||| |||||||||||||||
Sbjct: 3531369 agcatattccccgcccggatcccctcccccc 3531339



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 84      taggacagcatgtgttcttgacg 106
               |||||||||||||||||||||||
Sbjct: 3531290 taggacagcatgtgttcttgacg 3531268
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score =  190 bits (96), Expect = 3e-45
 Identities = 189/220 (85%)
 Strand = Plus / Minus

                                                                         
Query: 203   agaccttgttctggaagctctatgaaggatttgtgtcttgtttcaaaacaagggtcaata 262
             ||||||| | |||||| |||| | |||||| ||||||||||||| || ||||| ||||||
Sbjct: 67766 agaccttctcctggaaactctcttaaggatctgtgtcttgtttccaagcaaggatcaata 67707

                                                                         
Query: 263   gctgaagtggaatctgctttggccttgataaaaaagaatggtggaagtattgacggtaga 322
             |||||||| ||||||||||| || ||| | ||||||| ||||||||| ||||| || |||
Sbjct: 67706 gctgaagtagaatctgctttagctttgttgaaaaagagtggtggaagcattgatggcaga 67647

                                                                         
Query: 323   aatgcatttggccttggtgccctccaccttgcaacatggagaaatcaccttccaatcgtc 382
             ||||  ||||| ||| |||| |||||||||||||| ||||||||||| || ||||| || 
Sbjct: 67646 aatgtgtttggtctttgtgctctccaccttgcaacgtggagaaatcatctaccaattgtg 67587

                                                     
Query: 383   aggcggctcctagatgctggtgctaatccagatgcaaggg 422
             ||| ||||||| |||||||||||| |||||||||||||||
Sbjct: 67586 aggaggctcctcgatgctggtgctgatccagatgcaaggg 67547



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 421   ggatggagaatctggttggagcagcctccacag 453
             ||||||||||||||| ||||||||||| |||||
Sbjct: 67111 ggatggagaatctggctggagcagcctgcacag 67079



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 1     agcatattccacgccgggatcccctcccccc 31
             |||||||||| |||| |||||||||||||||
Sbjct: 69319 agcatattccccgcccggatcccctcccccc 69289



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 84    taggacagcatgtgttcttgacg 106
             |||||||||||||||||||||||
Sbjct: 69240 taggacagcatgtgttcttgacg 69218
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>ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.1 mRNA, complete cds
          Length = 4023

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 358 atggagaaatcaccttccaatcgtcaggcggctcctagatgctggtgctaatccagatgc 417
           ||||||||||||| |||| || || ||| | || || | |||||| ||| ||||||||||
Sbjct: 704 atggagaaatcacattcctattgttaggagactgcttgctgctggcgctgatccagatgc 763

                                   
Query: 418 aagggatggagaatctggttggag 441
            |||||||||||||||||||||||
Sbjct: 764 tagggatggagaatctggttggag 787
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>ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.2 mRNA, complete cds
          Length = 4032

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 358 atggagaaatcaccttccaatcgtcaggcggctcctagatgctggtgctaatccagatgc 417
           ||||||||||||| |||| || || ||| | || || | |||||| ||| ||||||||||
Sbjct: 704 atggagaaatcacattcctattgttaggagactgcttgctgctggcgctgatccagatgc 763

                                   
Query: 418 aagggatggagaatctggttggag 441
            |||||||||||||||||||||||
Sbjct: 764 tagggatggagaatctggttggag 787
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>dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown protein, complete
           cds, clone: RAFL16-74-J10
          Length = 4024

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 358 atggagaaatcaccttccaatcgtcaggcggctcctagatgctggtgctaatccagatgc 417
           ||||||||||||| |||| || || ||| | || || | |||||| ||| ||||||||||
Sbjct: 704 atggagaaatcacattcctattgttaggagactgcttgctgctggcgctgatccagatgc 763

                                   
Query: 418 aagggatggagaatctggttggag 441
            |||||||||||||||||||||||
Sbjct: 764 tagggatggagaatctggttggag 787
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OJ1641_C04
          Length = 134367

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 1   agcatattccacgccgggatcccctcccccc 31
           |||||||||| |||| |||||||||||||||
Sbjct: 686 agcatattccccgcccggatcccctcccccc 656



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 84  taggacagcatgtgttcttgacg 106
           |||||||||||||||||||||||
Sbjct: 607 taggacagcatgtgttcttgacg 585
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>ref|XM_450116.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1131

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 392 ctagatgctggtgctaatcca 412
           |||||||||||||||||||||
Sbjct: 532 ctagatgctggtgctaatcca 552
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>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   ggatggagaatctggttggag 441
             |||||||||||||||||||||
Sbjct: 53356 ggatggagaatctggttggag 53336
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>emb|AL139429.8| Human DNA sequence from clone RP11-110K14 on chromosome 20 Contains
             part of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3, complete
             sequence
          Length = 90052

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ggaatctgctttggccttgat 291
             |||||||||||||||||||||
Sbjct: 49116 ggaatctgctttggccttgat 49096
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>gb|AC123710.12| Mus musculus chromosome 5, clone RP23-378C15, complete sequence
          Length = 175744

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    ctggaagctctatgaaggatt 233
              |||||||||||||||||||||
Sbjct: 109340 ctggaagctctatgaaggatt 109320
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 392     ctagatgctggtgctaatcca 412
               |||||||||||||||||||||
Sbjct: 1801839 ctagatgctggtgctaatcca 1801819
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 156     agccttcagtatctccgccag 176
               |||||||||||||||||||||
Sbjct: 1382557 agccttcagtatctccgccag 1382577
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>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1227_D07
          Length = 118358

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   ctagatgctggtgctaatcca 412
             |||||||||||||||||||||
Sbjct: 40501 ctagatgctggtgctaatcca 40481
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>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence
          Length = 223516

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    atcccctcccccctcccaca 38
             ||||||||||||||||||||
Sbjct: 58460 atcccctcccccctcccaca 58441
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>gb|AE006328.1| Lactococcus lactis subsp. lactis IL1403 section 90 of 218 of the
            complete genome
          Length = 10499

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  tggccttgataaaaaagaat 301
            ||||||||||||||||||||
Sbjct: 1122 tggccttgataaaaaagaat 1141
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>gb|AC158972.4| Mus musculus chromosome 15, clone RP24-225M16, complete sequence
          Length = 163900

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    tttgagaagtaccatggagc 158
              ||||||||||||||||||||
Sbjct: 126095 tttgagaagtaccatggagc 126114
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>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10,
              complete sequence
          Length = 133967

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gatcccctcccccctcccac 37
              ||||||||||||||||||||
Sbjct: 101109 gatcccctcccccctcccac 101090
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     ctttggccttgataaaaaag 298
               ||||||||||||||||||||
Sbjct: 4336827 ctttggccttgataaaaaag 4336808
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 18       gatcccctcccccctcccac 37
                ||||||||||||||||||||
Sbjct: 27449952 gatcccctcccccctcccac 27449933
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>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168396

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ccagatgcaagggatggaga 429
             ||||||||||||||||||||
Sbjct: 55116 ccagatgcaagggatggaga 55097
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>gb|AC099636.8| Mus musculus chromosome 19, clone RP24-149H13, complete sequence
          Length = 141121

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ccgggatcccctcccccctc 33
             ||||||||||||||||||||
Sbjct: 11518 ccgggatcccctcccccctc 11499
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>gb|AC124632.11| Mus musculus chromosome 19, clone RP23-445I14, complete sequence
          Length = 178671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ccgggatcccctcccccctc 33
             ||||||||||||||||||||
Sbjct: 96850 ccgggatcccctcccccctc 96869
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>gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, complete sequence
          Length = 113176

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   gcaacatggagaaatcacct 372
             ||||||||||||||||||||
Sbjct: 56376 gcaacatggagaaatcacct 56395


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,300,162
Number of Sequences: 3902068
Number of extensions: 4300162
Number of successful extensions: 115188
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115008
Number of HSP's gapped (non-prelim): 180
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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