ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55b01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on chromosome X, complete sequence Length = 202742 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 268 ccccactctcatcccccctcccta 291 |||||||||||||||||||||||| Sbjct: 125952 ccccactctcatcccccctcccta 125929
>ref|NM_191707.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3102 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 635 ccaccgccgccgccgaggccat 656
>gb|AY495085.1| Oryza sativa (indica cultivar-group) glycine dehydrogenase P protein (GDC) mRNA, complete cds Length = 2679 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 629 ccaccgccgccgccgaggccat 650
>gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit mRNA, complete cds Length = 3487 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 708 ccaccgccgccgccgaggccat 729
>gb|AY346327.1| Oryza sativa (japonica cultivar-group) glycine dehydrogenase P protein mRNA, complete cds Length = 3102 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 635 ccaccgccgccgccgaggccat 656
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 1928329 ccaccgccgccgccgaggccat 1928308 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggccatct 83 |||||||||||||| ||||||||| Sbjct: 4910636 ccaccgccgccgccaaggccatct 4910613
>emb|AL118511.25|HSDJ858B6 Human DNA sequence from clone RP5-858B6 on chromosome 1q42.13-43 Contains two novel genes, the gene for a novel protein (FLJ14525) and a CpG island, complete sequence Length = 90175 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 tccctccccgcaagctcctggc 214 |||||||||||||||||||||| Sbjct: 35352 tccctccccgcaagctcctggc 35331
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 24021625 ccaccgccgccgccgaggccat 24021604
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 29554343 ccaccgccgccgccgaggccat 29554364
>gb|AE004934.1| Pseudomonas aeruginosa PAO1, section 495 of 529 of the complete genome Length = 12908 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 6863 ccaccgccgccgccgaggccat 6842
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 24163 ccaccgccgccgccgaggccat 24184
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 120617 ccaccgccgccgccgaggccat 120638
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 ccctccccgcgggctccacccc 143 |||||||||||||||||||||| Sbjct: 927234 ccctccccgcgggctccacccc 927213
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggccat 81 |||||||||||||||||||||| Sbjct: 31318 ccaccgccgccgccgaggccat 31297
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 ccctccccgcgggctccacccc 143 |||||||||||||||||||||| Sbjct: 601931 ccctccccgcgggctccacccc 601910
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgagg 77 ||||||||||||||||||||| Sbjct: 1800387 cccccaccgccgccgccgagg 1800407 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ccagcgcgccccgctgcccg 438 |||||||||||||||||||| Sbjct: 2224679 ccagcgcgccccgctgcccg 2224660 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgcctccttcctccccgcgg 182 |||||||||||||||||||| Sbjct: 1541590 cgcctccttcctccccgcgg 1541609
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 ccgagcgccagcgcgccccgc 432 ||||||||||||||||||||| Sbjct: 627517 ccgagcgccagcgcgccccgc 627537
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 gccgagcgccagcgcgccccgctgc 435 |||||||||||||||||| |||||| Sbjct: 1349106 gccgagcgccagcgcgccgcgctgc 1349082
>emb|X52499.1|SSVNTR32 S.scrofa VNTR DNA (clone pHTF32) Length = 264 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgccg 74 ||||||||||||||||||||| Sbjct: 56 cgccccccaccgccgccgccg 36
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gtccggcgcggcgcaggaacg 314 ||||||||||||||||||||| Sbjct: 61755 gtccggcgcggcgcaggaacg 61735
>dbj|AB125314.1| Nannochloris bacillaris NbrbcS2, Akl, NbSep, PABP1 genes for ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit, arabinose kinase-like protein, CDC10 cell division cycle 10 homolog, poly(A) binding protein I, partial and complete cds Length = 11337 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggcca 80 ||||||||||||||||||||| Sbjct: 9776 ccaccgccgccgccgaggcca 9796
>gb|AF018073.1|AF018073 Rhodobacter sphaeroides operon regulator (smoC), periplasmic sorbitol-binding protein (smoE), sorbitol/mannitol transport inner membrane protein (smoF), sorbitol/mannitol transport inner membrane protein (smoG), sorbitol/mannitol transport ATP-binding transport protein (smoK), sorbitol dehydrogenase (smoS), mannitol dehydrogenase (mtlK), and periplasmic mannitol-binding protein (smoM) genes, complete cds Length = 9810 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgagg 77 ||||||||||||||||||||| Sbjct: 979 cccccaccgccgccgccgagg 999
>emb|X52500.1|SSVNTR7 S.scrofa VNTR DNA (clone pHTF7) Length = 225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgccg 74 ||||||||||||||||||||| Sbjct: 40 cgccccccaccgccgccgccg 20
>ref|XM_511334.1| PREDICTED: Pan troglodytes similar to Zinc finger protein 179 (LOC454501), mRNA Length = 2058 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cgggctccatccctccctcc 199 |||||||||||||||||||| Sbjct: 58 cgggctccatccctccctcc 77
>ref|XM_475475.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1215 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgaggccatctccggc 88 ||||| |||||||||||| |||||||||||| Sbjct: 530 cccccgccgccgccgccgccgccatctccggc 561
>ref|NM_196163.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine zipper protein (OSJNBa0095C06.14), mRNA Length = 888 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccccccaccgccgccgccg 74 |||||||||||||||||||| Sbjct: 154 gccccccaccgccgccgccg 135
>ref|XM_476971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatctccg 86 |||||||||||||||||| ||||| Sbjct: 319 ccgccgccgccgaggccaactccg 296
>ref|XM_361903.1| Magnaporthe grisea 70-15 predicted protein (MG10980.4) partial cds Length = 2652 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggcgcggcgcaggaacgaga 317 |||||||||||||||||||| Sbjct: 2094 ggcgcggcgcaggaacgaga 2113
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgaggccatctccggc 88 ||||| |||||||||||| |||||||||||| Sbjct: 179138 cccccgccgccgccgccgccgccatctccggc 179169
>gb|DQ493954.1| Magnaporthe grisea 70-15 clone 56L15 telomere region, partial sequence Length = 41298 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggcgcggcgcaggaacgaga 317 |||||||||||||||||||| Sbjct: 21106 ggcgcggcgcaggaacgaga 21125
>gb|AE009192.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 218 of 256 of the complete sequence Length = 10123 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gccgccgccgaggccatctc 84 |||||||||||||||||||| Sbjct: 301 gccgccgccgaggccatctc 282
>gb|AY744142.1| Pseudomonas aeruginosa strain PA103 small protease gene, complete cds Length = 576 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cggagccgagcgccagcgcg 426 |||||||||||||||||||| Sbjct: 40 cggagccgagcgccagcgcg 21
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 9944769 cgccccccaccgccgccgcc 9944750
>emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chromosome 17, complete sequence Length = 158975 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 aggaacgagaacagagcaga 327 |||||||||||||||||||| Sbjct: 52240 aggaacgagaacagagcaga 52221
>gb|BC103575.1| Mus musculus hairy/enhancer-of-split related with YRPW motif 2, mRNA (cDNA clone MGC:124084 IMAGE:40045790), complete cds Length = 1330 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 28 ctccccgcgggcttcctccctccctccc 1
>gb|BC103576.1| Mus musculus hairy/enhancer-of-split related with YRPW motif 2, mRNA (cDNA clone MGC:124085 IMAGE:40045791), complete cds Length = 1333 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 31 ctccccgcgggcttcctccctccctccc 4
>gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, complete sequence Length = 149157 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cgggctccatccctccctcc 199 |||||||||||||||||||| Sbjct: 105760 cgggctccatccctccctcc 105741
>gb|AY346329.1| Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccccccaccgccgccgccg 74 |||||||||||||||||||| Sbjct: 346 gccccccaccgccgccgccg 327
>emb|AJ577569.1|TAE577569 Triticum aestivum partial mRNA for beta3-glucuronyltransferase (pglcat4 gene) Length = 1181 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggcc 79 |||||||||||||||||||| Sbjct: 218 ccaccgccgccgccgaggcc 237
>emb|AL356965.14| Human DNA sequence from clone RP11-399B22 on chromosome 1 Contains the 3' end of the SIPA1L2 gene for signal-induced proliferation-associated 1 like 2, complete sequence Length = 61419 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 catccctccctccccgcaagctcctggc 214 ||||||||||||||| | |||||||||| Sbjct: 43131 catccctccctcccctctagctcctggc 43104
>emb|AL354935.23| Human DNA sequence from clone RP11-117L14 on chromosome 9 Contains the 5' end of the RNF38 gene for ring finger protein 38 and a CpG island, complete sequence Length = 121826 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 120671 cgccccccaccgccgccgcc 120652
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 2429284 ccgccgccgccgaggccatc 2429303
>ref|NM_013904.1| Mus musculus hairy/enhancer-of-split related with YRPW motif 2 (Hey2), mRNA Length = 2549 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 88 ctccccgcgggcttcctccctccctccc 61
>emb|AJ271867.1|MMU271867 Mus musculus mRNA for basic-helix-loop-helix protein (Hey2 gene) Length = 2539 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 88 ctccccgcgggcttcctccctccctccc 61
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete sequence Length = 163279 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatctccggcga 90 ||||||||||||| || ||||||||||| Sbjct: 29119 ccgccgccgccgatgcgatctccggcga 29146
>gb|AE005928.1| Caulobacter crescentus CB15 section 254 of 359 of the complete genome Length = 10813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 2424 ccgccgccgccgaggccatc 2443
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccccccaccgccgccgccg 74 |||||||||||||||||||| Sbjct: 110477 gccccccaccgccgccgccg 110458
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gccgccgccgaggccatctc 84 |||||||||||||||||||| Sbjct: 2414105 gccgccgccgaggccatctc 2414086
>gb|AY059384.1| Mus musculus HES-related repressor protein 1 HERP1 gene, 5'-flanking region Length = 3521 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 3481 ctccccgcgggcttcctccctccctccc 3454
>dbj|AK158000.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930015I01 product:hairy/enhancer-of-split related with YRPW motif 2, full insert sequence Length = 2532 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 89 ctccccgcgggcttcctccctccctccc 62
>gb|AF232240.1|AF232240 Mus musculus HES-related repressor protein 1 HERP1 mRNA, complete cds Length = 2524 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 84 ctccccgcgggcttcctccctccctccc 57
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgcctccttcctccccgcgg 182 |||||||||||||||||||| Sbjct: 4632675 cgcctccttcctccccgcgg 4632694
>emb|AL732483.8| Mouse DNA sequence from clone RP23-70K10 on chromosome 2, complete sequence Length = 201542 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcctccttcctccccgcggg 183 |||||||||||||||||||| Sbjct: 64998 gcctccttcctccccgcggg 65017
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccaccgccgccgccgaggcc 79 |||||||||||||||||||| Sbjct: 3486809 ccaccgccgccgccgaggcc 3486828
>dbj|AK078521.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820429N04 product:nucleosome assembly protein 1-like 3, full insert sequence Length = 2813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 246 cgccccccaccgccgccgcc 265
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggcc 79 |||||||||||||||||||| Sbjct: 30826020 ccaccgccgccgccgaggcc 30826001
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatctccggcga 90 ||||||||||||| || ||||||||||| Sbjct: 17343160 ccgccgccgccgatgcgatctccggcga 17343133 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccccccaccgccgccgccg 74 |||||||||||||||||||| Sbjct: 11526484 gccccccaccgccgccgccg 11526465
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 16170566 cgccccccaccgccgccgcc 16170547
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 5580573 ccgccgccgccgaggccatc 5580554
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatctccg 86 |||||||||||||||||| ||||| Sbjct: 5141541 ccgccgccgccgaggccaactccg 5141564
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgaggccatctccggc 88 ||||| |||||||||||| |||||||||||| Sbjct: 24110649 cccccgccgccgccgccgccgccatctccggc 24110680
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 9942890 cgccccccaccgccgccgcc 9942871
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gtccggcgcggcgcaggaac 313 |||||||||||||||||||| Sbjct: 5139880 gtccggcgcggcgcaggaac 5139899
>gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete genome Length = 10855 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 accgccgccgccgaggccat 81 |||||||||||||||||||| Sbjct: 2516 accgccgccgccgaggccat 2497
>gb|AE004479.1| Pseudomonas aeruginosa PAO1, section 40 of 529 of the complete genome Length = 13987 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cggagccgagcgccagcgcg 426 |||||||||||||||||||| Sbjct: 6821 cggagccgagcgccagcgcg 6802
>ref|NM_138742.1| Mus musculus nucleosome assembly protein 1-like 3 (Nap1l3), mRNA Length = 2861 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 255 cgccccccaccgccgccgcc 274
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 107158 cgccccccaccgccgccgcc 107139
>gb|AC112197.3| Homo sapiens chromosome 5 clone RP11-442I12, complete sequence Length = 175775 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 catccctccctccccgcaagctcctggc 214 ||||||||||||||| | |||||||||| Sbjct: 99120 catccctccctccccaccagctcctggc 99093
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatctccg 86 |||||||||||||||||| ||||| Sbjct: 8255 ccgccgccgccgaggccaactccg 8278
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 2373315 ccgccgccgccgaggccatc 2373334
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 75167 cgccccccaccgccgccgcc 75148
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ccgccgccgccgaggccatctccg 86 |||||||||||||||||| ||||| Sbjct: 97708 ccgccgccgccgaggccaactccg 97731
>dbj|AB164631.1| Streptomyces griseus AdBS2 gene cluster (orf6-AdBS2, orf5-AdBS2, orf1-AdBS2, orf2-AdBS2, orf3-AdBS2, orf4-AdBS2), complete and partial cds Length = 6620 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cggcccgagcacaacgcctccttc 172 |||||||||||||||||| ||||| Sbjct: 2278 cggcccgagcacaacgccgccttc 2255
>dbj|AP005499.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0412D08 Length = 150188 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 35949 ccgccgccgccgaggccatc 35930
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatc 82 |||||||||||||||||||| Sbjct: 106801 ccgccgccgccgaggccatc 106782
>dbj|AK121814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098G21, full insert sequence Length = 3219 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggcc 79 |||||||||||||||||||| Sbjct: 368 ccaccgccgccgccgaggcc 349
>gb|AF173902.1|AF173902 Mus musculus basic helix-loop-helix factor 1 (CHF1) mRNA, complete cds Length = 2541 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 80 ctccccgcgggcttcctccctccctccc 53
>dbj|AK110589.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F05, full insert sequence Length = 1552 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 cccccaccgccgccgccgaggccatctccggc 88 ||||| |||||||||||| |||||||||||| Sbjct: 561 cccccgccgccgccgccgccgccatctccggc 592
>emb|AJ333516.1|HSA333516 Homo sapiens genomic sequence surrounding NotI site, clone NL6-EN16R Length = 575 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 118 cgccccccaccgccgccgcc 137
>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full insert sequence Length = 3529 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatctccggcga 90 ||||||||||||| || ||||||||||| Sbjct: 140 ccgccgccgccgatgcgatctccggcga 113
>dbj|AK100369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084A05, full insert sequence Length = 2234 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 291 cgccccccaccgccgccgcc 272
>gb|AF172287.1|AF172287 Mus musculus hairy-related transcription factor 2 (Hrt2) mRNA, complete cds Length = 2549 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 88 ctccccgcgggcttcctccctccctccc 61
>dbj|AK065931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J17, full insert sequence Length = 2843 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccaccgccgccgccgaggcc 79 |||||||||||||||||||| Sbjct: 46 ccaccgccgccgccgaggcc 27
>gb|BC027045.1| Mus musculus nucleosome assembly protein 1-like 3, mRNA (cDNA clone MGC:38984 IMAGE:5363560), complete cds Length = 2735 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 152 cgccccccaccgccgccgcc 171
>gb|BC020176.1| Mus musculus nucleosome assembly protein 1-like 3, mRNA (cDNA clone MGC:27624 IMAGE:4505496), complete cds Length = 2861 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 255 cgccccccaccgccgccgcc 274
>dbj|AK062637.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D04, full insert sequence Length = 507 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatctccg 86 |||||||||||||||||| ||||| Sbjct: 319 ccgccgccgccgaggccaactccg 296
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 ccgccgccgccgaggccatctccggcga 90 ||||||||||||| || ||||||||||| Sbjct: 17352200 ccgccgccgccgatgcgatctccggcga 17352173 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccccccaccgccgccgccg 74 |||||||||||||||||||| Sbjct: 11532924 gccccccaccgccgccgccg 11532905
>emb|BX005467.6| Mouse DNA sequence from clone RP23-74L11 on chromosome X, complete sequence Length = 233590 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 118175 cgccccccaccgccgccgcc 118156
>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence Length = 192261 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 acaaggctcctccctctcct 29 |||||||||||||||||||| Sbjct: 141375 acaaggctcctccctctcct 141356
>gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, complete sequence Length = 182582 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 ctccccgcgggctccatccctccctccc 200 ||||||||||||| | |||||||||||| Sbjct: 35141 ctccccgcgggcttcctccctccctccc 35114
>gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940143D9, complete sequence Length = 118759 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cgccgccgaggccatctccggcga 90 |||||||||||||||| ||||||| Sbjct: 90791 cgccgccgaggccatcgccggcga 90814
>gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940139D9, complete sequence Length = 118752 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cgccgccgaggccatctccggcga 90 |||||||||||||||| ||||||| Sbjct: 90787 cgccgccgaggccatcgccggcga 90810
>gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940124D9, complete sequence Length = 118889 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cgccgccgaggccatctccggcga 90 |||||||||||||||| ||||||| Sbjct: 27966 cgccgccgaggccatcgccggcga 27943
>dbj|AB010711.1| Mus sp. mRNA for MB20, complete cds Length = 2837 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccccccaccgccgccgcc 73 |||||||||||||||||||| Sbjct: 271 cgccccccaccgccgccgcc 290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,900,723 Number of Sequences: 3902068 Number of extensions: 3900723 Number of successful extensions: 116506 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113701 Number of HSP's gapped (non-prelim): 2805 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
