ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 622 e-175
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 432 e-118
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
7ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 42 1.4
8emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.4
9gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence 42 1.4
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.4
11gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 42 1.4
12gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 42 1.4
13gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.4
14gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, comp... 42 1.4
15emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 1.4
16ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA 42 1.4
17gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, comple... 42 1.4
18dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.4
19gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 5.6
20ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains... 40 5.6
21ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
22gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
23gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
24gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 5.6
25gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
26gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.6
27ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM048... 40 5.6
28gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 5.6
29ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.6
30ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinobl... 40 5.6
31ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinobl... 40 5.6
32ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predi... 40 5.6
33ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.6
34emb|BX011524.1|CNS08H20 Single read from an extremity of a full-... 40 5.6
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
37dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
39ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC ... 40 5.6
40gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
41dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.6
42dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
43dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
44dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
45emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 5.6
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
47emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 5.6 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  622 bits (314), Expect = e-175
 Identities = 360/374 (96%), Gaps = 1/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 106
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 107 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 166
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 167 cagccgcggcgccaccgacccgtccccctactcggacgacgatggcgaggcggaggtcga 226
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 227 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                                       
Query: 287 cggggaagacctcttcaacgacgactacctcaatgattaccggagaatggatgagcagga 346
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302

                                                                       
Query: 347 tcactatgagtccgttgggttagatgactccatagaggatgagaggaacctggatgagat 406
           ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 303 tcagtatgagtcggttgggttagacgactcgatagaggatgagaggaacctggatgagat 362

                         
Query: 407 catggctgatcgaa 420
           ||||||||||||||
Sbjct: 363 catggctgatcgaa 376
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  432 bits (218), Expect = e-118
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                        
Query: 86   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 145
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 146  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtccccctactcggacga 205
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 206  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                  
Query: 266  ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctcaa 319
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628



 Score =  155 bits (78), Expect = 1e-34
 Identities = 93/98 (94%)
 Strand = Plus / Plus

                                                                        
Query: 323  ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccataga 382
            |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactcgataga 3447

                                                  
Query: 383  ggatgagaggaacctggatgagatcatggctgatcgaa 420
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 3448 ggatgagaggaacctggatgagatcatggctgatcgaa 3485



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 63
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 64   acccttctcggagcccgcggatgg 87
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  214 bits (108), Expect = 2e-52
 Identities = 178/200 (89%), Gaps = 6/200 (3%)
 Strand = Plus / Plus

                                                                       
Query: 213 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                       
Query: 273 gaggaggaagacgacggggaagacctcttcaacgacgactacctcaatgattaccggaga 332
           |||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347

                                                                       
Query: 333 atggatgagcaggatcactatgagtccgttgggttagatgactccatagaggatgagagg 392
           |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||
Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactcgatagaggatgaaagg 407

                               
Query: 393 aacctggatgagatcatggc 412
           ||||||||||||||||||||
Sbjct: 408 aacctggatgagatcatggc 427



 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Plus

                                                                       
Query: 83  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 142
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 143 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtccccctactcgga 202
           | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 203 cgacga 208
           ||||||
Sbjct: 203 cgacga 208
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 90    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 150   ccgcccaacaccaccaccagccgcggcgccaccgacccgtccccctactcggacgacga 208
             ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                         
Query: 320   tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
             |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 98283

                                              
Query: 380   agaggatgagaggaacctggatgagatcatggc 412
             ||||||||| |||||||||||||||||||||||
Sbjct: 98284 agaggatgaaaggaacctggatgagatcatggc 98316



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 213   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 273   gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
             |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtccccctactcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                            
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16457684

                                                 
Query: 380      agaggatgagaggaacctggatgagatcatggc 412
                ||||||||| |||||||||||||||||||||||
Sbjct: 16457685 agaggatgaaaggaacctggatgagatcatggc 16457717



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 273      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtccccctactcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                            
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16548688

                                                 
Query: 380      agaggatgagaggaacctggatgagatcatggc 412
                ||||||||| |||||||||||||||||||||||
Sbjct: 16548689 agaggatgaaaggaacctggatgagatcatggc 16548721



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 273      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
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>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 actcggacgacgatggcgagg 216
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   actcggacgacgatggcgagg 216
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830
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>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence
          Length = 711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 268 gcgacgaggaggaagacgacggggaagac 296
           ||||||||||||||||||| | |||||||
Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 203     cgacgatggcgaggcggaggt 223
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
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>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   gaggatgagaggaacctggat 401
             |||||||||||||||||||||
Sbjct: 91539 gaggatgagaggaacctggat 91519
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>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    gaggatgagaggaacctggat 401
              |||||||||||||||||||||
Sbjct: 146103 gaggatgagaggaacctggat 146083
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 273    gaggaggaagacgacggggaa 293
              |||||||||||||||||||||
Sbjct: 909354 gaggaggaagacgacggggaa 909334
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>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence
          Length = 152529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    gaggatgagaggaacctggat 401
              |||||||||||||||||||||
Sbjct: 114816 gaggatgagaggaacctggat 114796
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 158 caccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 273 gaggaggaagacgacggggaa 293
           |||||||||||||||||||||
Sbjct: 154 gaggaggaagacgacggggaa 174
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>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence
          Length = 128253

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    atggatgagcaggatcactat 353
              |||||||||||||||||||||
Sbjct: 108319 atggatgagcaggatcactat 108339
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    ccttcccgccgaaaccctagcctca 35
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   atgactccatagaggatgag 389
             ||||||||||||||||||||
Sbjct: 52421 atgactccatagaggatgag 52440
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>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 868 gaggaggaagacgacgggga 887
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>ref|NM_193891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 636 cgacgaggaggaagacgacg 655
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gaggaggaagacgacgggga 292
              ||||||||||||||||||||
Sbjct: 121853 gaggaggaagacgacgggga 121872
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cgacgaggaggaagacgacg 288
              ||||||||||||||||||||
Sbjct: 107836 cgacgaggaggaagacgacg 107817
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>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cgaggacgacggcgccaccg 261
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cgacgaggaggaagacgacg 288
             ||||||||||||||||||||
Sbjct: 22028 cgacgaggaggaagacgacg 22009
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccaccaccagccgcggc 176
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 269 cgacgaggaggaagacgacggggaagac 296
           |||||| ||||||||||||| |||||||
Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcctccacaggacccttct 71
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1)
           partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 402 cgacgaggaggaagacgacg 421
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>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA
          Length = 2389

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  gaggaggaagacgacggggaagac 296
            |||||||||||||||| |||||||
Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
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>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical
            UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 281  agacgacggggaagacctcttcaa 304
            |||||||| |||||||||||||||
Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
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>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 269 cgacgaggaggaagacgacggggaagac 296
           ||||||||||| | ||||||||||||||
Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gaggaggaagacgacgggga 292
                ||||||||||||||||||||
Sbjct: 15063234 gaggaggaagacgacgggga 15063253
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
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>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8
           (predicted) (Zcchc8_predicted), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 162 cgacgaggaggaagacgacg 181
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 164     caccagccgcggcgccaccgacccgtcc 191
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caccaccaccagccgcggcg 177
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ccgcggatggacgactcgga 97
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cgacgaggaggaagacgacg 288
             ||||||||||||||||||||
Sbjct: 55031 cgacgaggaggaagacgacg 55012
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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cgacgaggaggaagacgacg 288
              ||||||||||||||||||||
Sbjct: 113670 cgacgaggaggaagacgacg 113689
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>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full
           insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 978 cgacgaggaggaagacgacg 997
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcctccacaggacccttct 71
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gaggaggaagacgacgggga 292
                ||||||||||||||||||||
Sbjct: 15071475 gaggaggaagacgacgggga 15071494
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 273     gaggaggaagacgacggggaagac 296
               |||||||||||||||| |||||||
Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,048,751
Number of Sequences: 3902068
Number of extensions: 3048751
Number of successful extensions: 72457
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71673
Number of HSP's gapped (non-prelim): 783
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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