ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55a11 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 145 bits (367), Expect(2) = 2e-35 Identities = 70/76 (92%), Positives = 75/76 (98%) Frame = +2 Query: 206 DFLRPHGGGASGVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQILRLQQEIEAELHG 385 DFLRPHGGGASGVSRIGDLH E+RER+RYSRDQLLDLRKITD++EQILRLQQEIEAEL+G Sbjct: 38 DFLRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNG 97 Query: 386 DDQSWVRNDSNVQLQT 433 DDQSWVRNDSNVQLQT Sbjct: 98 DDQSWVRNDSNVQLQT 113 Score = 21.9 bits (45), Expect(2) = 2e-35 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +1 Query: 157 MTTDQPVIS 183 MTTDQPVIS Sbjct: 1 MTTDQPVIS 9
>VIME_MESAU (P02544) Vimentin| Length = 464 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 140 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 191
>VIME_RAT (P31000) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_PANTR (Q5R1W8) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MOUSE (P20152) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MACFA (Q4R4X4) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIME_HUMAN (P08670) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_CERAE (P84198) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIMB_CARAU (P48673) Vimentin beta| Length = 450 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ + +R DQL++ + ++ E I RL+Q+++ E+ Sbjct: 128 GSSRVGDLYEDEMRELRRQVDQLINEKASVEVDRDNLGENIERLRQKLQEEM 179
>VIME_CRIGR (P48670) Vimentin (Fragment)| Length = 448 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 124 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIIRLREKLQEEM 175
>VIME_CHICK (P09654) Vimentin| Length = 459 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ E +R DQL + + ++ ++ I+RL+++++ E+ Sbjct: 135 GTSRLGDLYEEEMRDVRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEM 186
>YA8B_SCHPO (Q09776) Hypothetical protein C22F3.11c in chromosome I| Length = 151 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 269 ETRERIRYSRDQLLDLRKITD---ISEQILRLQQEIEAELHGDDQSWVRNDSN 418 E +ER+ Y R QLL+ K ++ + E++ R QE+EA+ Q V + N Sbjct: 74 EVKERMEYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRRKQKKVNKEKN 126
>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC| 3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase) (CGS-PDE) (cGSPDE) Length = 941 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 12 RSQTEPNPPPREEGKKKLGFLRDFLPGTPPIPCRSSCRGALVGFGTL 152 RSQ P P E +++ FL+ P PP PC S + AL+ G++ Sbjct: 12 RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57
>VIM4_XENLA (P24790) Vimentin 4| Length = 463 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 11/74 (14%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL------HG 385 G SRIGDL+ E IR DQ ++ + ++ + + RL+++++ E+ G Sbjct: 136 GTSRIGDLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEMIQREEAEG 195 Query: 386 DDQSWVRNDSNVQL 427 + QS+ ++ N L Sbjct: 196 NLQSFRQDVDNASL 209
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 258 SPILETPEAPPPCGRRKSPEP 196 +PILETP +PPP PEP Sbjct: 700 APILETPISPPPEANCTDPEP 720
>VIME_CYPCA (Q92155) Vimentin| Length = 455 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+GDL+ + +R DQL + + ++ E I RL+++++ E+ Sbjct: 133 GSSRVGDLYQDEMRELRRQVDQLTNEKATVEVDRDNLGEDIERLKEKLQEEM 184
>VIME_BOVIN (P48616) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SR+G L+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGQLYEEEMRELRRQVDQLTNDKARAEVERHNLAEDIMRLREKLQEEM 192
>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)| (p46Eg265) Length = 407 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 6 GERSQTEPNPPPREEGKKKLGFLRDFLPGTP 98 G Q + + P+EEGKKK L DF G P Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 246 ETPEAPPPCGRRKSPEPEAAQADHWLVCRHG*GSRTRPRHR-GSSID 109 E+ A P GR ++PEP+AA D L R R +HR G+ +D Sbjct: 200 ESTAAQPDSGREETPEPDAAANDVGLTDEE--YMRLRMKHRVGTDLD 244
>VIME_ONCMY (P48674) Vimentin| Length = 461 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +2 Query: 239 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 379 G SRIGDL+ + +R DQL + + ++ E I RL+++++ E+ Sbjct: 138 GASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNMGEDIERLREKLQDEM 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,122,579 Number of Sequences: 219361 Number of extensions: 998496 Number of successful extensions: 4188 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4177 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
