ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 406 bits (205), Expect = e-110 Identities = 238/249 (95%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgcctccggcgtctc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgcctccggcgtctc 235 Query: 247 caggattggtgacttgcattttgagacacgtgagcgtattcgttattcaagagatcaact 306 |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct: 236 caggattggtgacttgcattctgagtcacgtgagcgtgttcgttattcaagagatcaact 295 Query: 307 tcttgacctgcgaaagattaccgatatatccgagcaaatcttgaggcttcagcaggaaat 366 |||||||||||| |||||||| ||| || ||||||||||||||||||||||||| ||||| Sbjct: 296 tcttgacctgcgcaagattactgatgtaaccgagcaaatcttgaggcttcagcaagaaat 355 Query: 367 tgaagcagagcttcatggtgacgatcagagctgggttcgcaacgattcgaatgtgcagtt 426 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 356 tgaagcagagcttaatggtgacgatcagagctgggttcgcaacgattcaaatgtgcaatt 415 Query: 427 gcagacaca 435 ||||||||| Sbjct: 416 gcagacaca 424 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcaccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 331 bits (167), Expect = 1e-87 Identities = 233/250 (93%), Gaps = 5/250 (2%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgcct-ccggcgtct 245 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct: 176 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgccttccgggctct 235 Query: 246 ccaggattggtgacttgcattttgagacacgtgagcgtattcgttattcaagagatcaac 305 |||||||||||| ||||||| | ||| |||| ||||| ||||||||||||||||||||| Sbjct: 236 ccaggattggtg-cttgcatct-gagtcacg--agcgtgttcgttattcaagagatcaac 291 Query: 306 ttcttgacctgcgaaagattaccgatatatccgagcaaatcttgaggcttcagcaggaaa 365 ||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 292 ttcttgacctgcgcaagattactgatgtgaccgagcaaatcttgaggcttcagcaggaaa 351 Query: 366 ttgaagcagagcttcatggtgacgatcagagctgggttcgcaacgattcgaatgtgcagt 425 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 352 ttgaagcagagcttcatggtgacgatcagagctgggttcgcaacgattcaaatgtgcaat 411 Query: 426 tgcagacaca 435 |||||||||| Sbjct: 412 tgcagacaca 421 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcaccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117
>gb|AY109824.1| Zea mays CL533_1 mRNA sequence Length = 2894 Score = 71.9 bits (36), Expect = 2e-09 Identities = 123/152 (80%) Strand = Plus / Plus Query: 263 cattttgagacacgtgagcgtattcgttattcaagagatcaacttcttgacctgcgaaag 322 ||||||||| ||||||||||| |||| || |||||||||||||||| || ||||| || Sbjct: 323 cattttgagccacgtgagcgtgttcgatacacaagagatcaacttctcgagctgcgtgag 382 Query: 323 attaccgatatatccgagcaaatcttgaggcttcagcaggaaattgaagcagagcttcat 382 ||| ||| | || ||| |||| || || | |||| || ||||| | |||||||||| Sbjct: 383 attgttgatgtgtctgaggaaattttaagaatcaagcaagagattgatgtagagcttcat 442 Query: 383 ggtgacgatcagagctgggttcgcaacgattc 414 ||||| || ||||||||||||||||| ||||| Sbjct: 443 ggtgaagaccagagctgggttcgcaatgattc 474
>ref|XM_473052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 96 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 143 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 178 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 218
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 47795 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 47748 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 47039 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 46999
>gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic initiation factor-like protein mRNA, complete cds Length = 2379 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 96 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 143 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 178 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 218
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 24927210 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 24927163 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 24926454 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 24926414
>emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5672 Length = 2558 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 209 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5673 Length = 2533 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 209 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5681 Length = 2699 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 209 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Gigante Length = 2599 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 106 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 153 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 188 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 228
>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar IR64 Length = 2599 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 99 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 146 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 181 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 221
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 55296 cgccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 55249 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 54548 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 54508
>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full insert sequence Length = 2907 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 189 ccgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 234 |||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 139 ccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 184 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 278 gagcgtattcgttattcaagagatcaacttcttgacctgcg 318 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 219 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 259
>gb|AF345522.1| TT virus isolate TCHN-E Orf2 and Orf1 genes, complete cds Length = 3288 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 226 cggcggcgcctccggcgtctcca 248 ||||||||||||||||||||||| Sbjct: 547 cggcggcgcctccggcgtctcca 525
>gb|AF315076.1|AF315076 TTV-like virus DXL1 unknown genes Length = 3285 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 226 cggcggcgcctccggcgtctcca 248 ||||||||||||||||||||||| Sbjct: 541 cggcggcgcctccggcgtctcca 519
>dbj|AB158460.1| Streptomyces halstedii hlsA, hlsB, hlsC genes for type I polyketide synthase, type I polyketide synthase, type I polyketide synthase, complete and partial cds Length = 45102 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Minus Query: 217 cccgcacggcggcggcgcctccggcgt 243 |||||| |||||||||||||||||||| Sbjct: 43234 cccgcagggcggcggcgcctccggcgt 43208
>ref|XM_466679.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cgacttcctccgcccgcacggcggcg 230 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cgacttcctccgcccgcacggcggcg 230 ||||||||||||||||| |||||||| Sbjct: 24093957 cgacttcctccgcccgcgcggcggcg 24093932
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cgacttcctccgcccgcacggcggcg 230 ||||||||||||||||| |||||||| Sbjct: 52698 cgacttcctccgcccgcgcggcggcg 52673
>dbj|AK072083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118N03, full insert sequence Length = 3014 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cgacttcctccgcccgcacggcggcg 230 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>ref|XM_483426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cggcggcggcgcctccggcgt 243 ||||||||||||||||||||| Sbjct: 683 cggcggcggcgcctccggcgt 703
>ref|NM_183759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 gcccgcacggcggcggcgcctccggcgtc 244 |||||||||||| ||||||| |||||||| Sbjct: 794 gcccgcacggcgccggcgccgccggcgtc 822
>gb|AY016020.1| Gallus gallus alpha globin gene cluster, complete sequence Length = 103190 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ctccgcccgcacggcggcggc 232 ||||||||||||||||||||| Sbjct: 101622 ctccgcccgcacggcggcggc 101602
>ref|NM_008242.1| Mus musculus forkhead box D1 (Foxd1), mRNA Length = 2437 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 gcgccgcctccggctccggcg 206 ||||||||||||||||||||| Sbjct: 700 gcgccgcctccggctccggcg 680
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acggcggcggcgcctccggcg 242 ||||||||||||||||||||| Sbjct: 41219 acggcggcggcgcctccggcg 41239
>tpg|BK000941.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M333, complete sequence Length = 14620 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 gcccgcacggcggcggcgcctccggcgtc 244 |||||||||||| ||||||| |||||||| Sbjct: 10383 gcccgcacggcgccggcgccgccggcgtc 10411
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cggcggcggcgcctccggcgt 243 ||||||||||||||||||||| Sbjct: 26154769 cggcggcggcgcctccggcgt 26154789
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 gcccgcacggcggcggcgcctccggcgtc 244 |||||||||||| ||||||| |||||||| Sbjct: 12075305 gcccgcacggcgccggcgccgccggcgtc 12075333 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 35510228 tgcgccgcctccggctccgg 35510209 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 29716165 ccgcacggtggcggcgcctccggc 29716142
>gb|AC172304.2| Gallus gallus BAC clone CH261-75C12 from chromosome ul, complete sequence Length = 227366 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ctccgcccgcacggcggcggc 232 ||||||||||||||||||||| Sbjct: 38521 ctccgcccgcacggcggcggc 38541
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 gcccgcacggcggcggcgcctccggcgtc 244 |||||||||||| ||||||| |||||||| Sbjct: 42245 gcccgcacggcgccggcgccgccggcgtc 42273
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 gcccgcacggcggcggcgcctccggcgtc 244 |||||||||||| ||||||| |||||||| Sbjct: 120969 gcccgcacggcgccggcgccgccggcgtc 120997
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cggcggcggcgcctccggcgt 243 ||||||||||||||||||||| Sbjct: 98700 cggcggcggcgcctccggcgt 98720
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 tccgcccgcacggcggcggcgcctc 237 ||||||||||||||| ||||||||| Sbjct: 3929248 tccgcccgcacggcgccggcgcctc 3929272
>gb|L38607.1|MUSBF2TF Mus musculus (clones 1 and 5) transcription factor (BF-2) mRNA, complete cds Length = 2437 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 gcgccgcctccggctccggcg 206 ||||||||||||||||||||| Sbjct: 700 gcgccgcctccggctccggcg 680
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcccgcacggcggcggcgcc 235 |||||||||||||||||||| Sbjct: 17207 gcccgcacggcggcggcgcc 17188
>ref|NM_197184.1| Oryza sativa (japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.12), mRNA Length = 957 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 243 cgccgcctccggctccggcg 224
>ref|NM_197186.1| Oryza sativa (japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.2), mRNA Length = 972 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 258 cgccgcctccggctccggcg 239
>ref|NM_197185.1| Oryza sativa (japonica cultivar-group) putative epoxide hydrolase (OSJNBa0017E08.11), mRNA Length = 864 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 245 cgccgcctccggctccggcg 226
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cgcccgcacggcggcggcgc 234 |||||||||||||||||||| Sbjct: 2776750 cgcccgcacggcggcggcgc 2776731
>ref|NM_190438.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 300 tgcgccgcctccggctccgg 319
>ref|NM_191743.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 334 ccgcacggtggcggcgcctccggc 357
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctccgcccgcacggcg 227 |||||||||||||||||||| Sbjct: 31753705 cttcctccgcccgcacggcg 31753686
>gb|AC129020.4| Mus musculus BAC clone RP23-234A5 from chromosome 16, complete sequence Length = 192668 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tattcaagagatcaacttcttgac 313 |||||||||| ||||||||||||| Sbjct: 169402 tattcaagagctcaacttcttgac 169379
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC108850.3| Mus musculus chromosome 1, clone RP24-85N11, complete sequence Length = 194889 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tgaagcagagcttcatggtg 386 |||||||||||||||||||| Sbjct: 70005 tgaagcagagcttcatggtg 70024
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctccgcccgcacggcg 227 |||||||||||||||||||| Sbjct: 78931 cttcctccgcccgcacggcg 78912
>emb|AJ518946.2|SSP518946 Sinorhizobium sp. BR816 nodulation gene cluster nodD1, nodE, nodF, nodA, nodB, nodC, nodS, nodU, nodI, nodJ, orf350, nodH, nodP2, nodQ2 genes and orf116, orf113 and orf352, strain BR816 Length = 18521 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cgcctccggcgtctccaggattgg 255 ||||||| |||||||||||||||| Sbjct: 11586 cgcctccagcgtctccaggattgg 11563
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 23462 cgccgcctccggctccggcg 23481 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 20041 cgccgcctccggctccggcg 20060 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 16339 cgccgcctccggctccggcg 16358
>gb|AC109442.3| Homo sapiens chromosome 5 clone CTC-345B2, complete sequence Length = 71075 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaatcttgaggcttcagcag 361 |||||||||||||||||||| Sbjct: 43235 aaatcttgaggcttcagcag 43216
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cggcggcggcgcctccggcg 242 |||||||||||||||||||| Sbjct: 2486153 cggcggcggcgcctccggcg 2486134
>gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of the complete genome Length = 12370 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cccgcacggcggcggcgcct 236 |||||||||||||||||||| Sbjct: 5532 cccgcacggcggcggcgcct 5513
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ggcggcggcgcctccggcgt 243 |||||||||||||||||||| Sbjct: 87682 ggcggcggcgcctccggcgt 87701
>tpg|BK005062.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 59 (WRKY59) gene, complete cds Length = 1422 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 127 ccgcacggtggcggcgcctccggc 150
>tpg|BK005029.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 26 (WRKY26) gene, complete cds Length = 1682 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 118 ccgcacggtggcggcgcctccggc 141
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 cccgcacggcggcggcgcctccggcgtc 244 ||||||||||||||||| | |||||||| Sbjct: 3333763 cccgcacggcggcggcggccccggcgtc 3333790
>gb|AC106752.3| Homo sapiens chromosome 5 clone RP11-166J22, complete sequence Length = 95926 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaatcttgaggcttcagcag 361 |||||||||||||||||||| Sbjct: 164 aaatcttgaggcttcagcag 145
>gb|AC125310.5| Mus musculus BAC clone RP24-548E5 from chromosome 1, complete sequence Length = 223534 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tgaagcagagcttcatggtg 386 |||||||||||||||||||| Sbjct: 65721 tgaagcagagcttcatggtg 65702
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18490354 cgccgcctccggctccggcg 18490335 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18486652 cgccgcctccggctccggcg 18486633 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18483231 cgccgcctccggctccggcg 18483212
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctccgcccgcacggcg 227 |||||||||||||||||||| Sbjct: 31844221 cttcctccgcccgcacggcg 31844202
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 45896 ccgcacggtggcggcgcctccggc 45873
>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaatcttgaggcttcagcag 361 |||||||||||||||||||| Sbjct: 102586 aaatcttgaggcttcagcag 102567
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 40415 tgcgccgcctccggctccgg 40396
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 134177 tgcgccgcctccggctccgg 134158
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ccgcccgcacggcggcggcg 233 |||||||||||||||||||| Sbjct: 6121974 ccgcccgcacggcggcggcg 6121955
>dbj|AK120570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134D09, full insert sequence Length = 1353 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 293 cgccgcctccggctccggcg 274
>dbj|AK099788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097A17, full insert sequence Length = 3409 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 579 tgcgccgcctccggctccgg 598
>dbj|AK108555.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E10, full insert sequence Length = 1193 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 158 ccgcacggtggcggcgcctccggc 181
>emb|AJ329702.1|HSA329702 Homo sapiens genomic sequence surrounding NotI site, clone NL1-UC14C Length = 572 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tcagagctgggttcgcaacg 410 |||||||||||||||||||| Sbjct: 378 tcagagctgggttcgcaacg 359
>dbj|AK073766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069D23, full insert sequence Length = 4027 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 576 tgcgccgcctccggctccgg 595
>dbj|AK069312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010E11, full insert sequence Length = 2224 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgcgccgcctccggctccgg 204 |||||||||||||||||||| Sbjct: 576 tgcgccgcctccggctccgg 595
>dbj|AK060338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C11, full insert sequence Length = 1182 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 327 cgccgcctccggctccggcg 308
>dbj|AK059733.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H06, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 308 cgccgcctccggctccggcg 289
>dbj|AK059099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C08, full insert sequence Length = 1256 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 327 cgccgcctccggctccggcg 308
>dbj|AB059642.1| Perilla frutescens mRNA for putative regulatory protein in anthocyanin biosynthesis, complete cds Length = 1410 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctccggcgacttcctccgcc 218 |||||||||||||||||||| Sbjct: 317 ctccggcgacttcctccgcc 336
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cgcacggcggcggcgcctccggcg 242 |||||||||||||||| ||||||| Sbjct: 2746561 cgcacggcggcggcgcgtccggcg 2746584
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18500407 cgccgcctccggctccggcg 18500388 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18496705 cgccgcctccggctccggcg 18496686 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgccgcctccggctccggcg 206 |||||||||||||||||||| Sbjct: 18493284 cgccgcctccggctccggcg 18493265
>gb|AY870609.1| Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds Length = 931 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgcacggcggcggcgcctccggc 241 |||||||| ||||||||||||||| Sbjct: 134 ccgcacggtggcggcgcctccggc 157
>gb|AC138328.3| Mus musculus BAC clone RP23-378F20 from 1, complete sequence Length = 153109 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tgaagcagagcttcatggtg 386 |||||||||||||||||||| Sbjct: 146645 tgaagcagagcttcatggtg 146626
>emb|CT030646.6| Mouse DNA sequence from clone RP23-222A16 on chromosome 13, complete sequence Length = 195169 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aaattgaagcagagcttcat 382 |||||||||||||||||||| Sbjct: 152872 aaattgaagcagagcttcat 152853
>gb|AC100561.13| Mus musculus chromosome 1, clone RP23-154C4, complete sequence Length = 207939 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tgaagcagagcttcatggtg 386 |||||||||||||||||||| Sbjct: 29914 tgaagcagagcttcatggtg 29895 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,159,593 Number of Sequences: 3902068 Number of extensions: 3159593 Number of successful extensions: 61605 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60562 Number of HSP's gapped (non-prelim): 1041 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
