>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion|
            defective protein 3)
          Length = 1409

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 34/92 (36%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
 Frame = +3

Query: 165  PVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKS 344
            PV PRE    P RNPPP   GA     EG    P L P      V  T    TP +LV +
Sbjct: 967  PVPPREAPPIPKRNPPPL--GAPPKVPEGARAPPPLPP---RPKVKTTAVDETPQNLVPN 1021

Query: 345  IHAQLDAQIPVNADL-SQRKP---PAKATMLP 428
                  +     AD   Q KP   PA  T LP
Sbjct: 1022 NQPAQPSSPSFLADADEQTKPLLKPAPPTTLP 1053

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +3

Query: 171 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH 350
           TP+  G  P R P     GA     EG+    E     G++A  +    STP S+   + 
Sbjct: 98  TPQGPGRKPRRRPGASPTGATPTIEEGEEDEEEANEAEGARAPTEPSPASTPSSVQFFLQ 157

Query: 351 AQLDAQIPVNADLSQRKPPAKATMLPKRD 437
               A+       ++R  P+  T+LP ++
Sbjct: 158 EDEGAE-----RKAERTSPSPPTLLPHQE 181

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +3

Query: 162 LPVTPRELGFTPFRN--PPPQEEGALQNS--SEGKIQAPELKPLAGSQAVPKTEGVSTPI 329
           +P T   L FTP  +  PP   E +L  +  S    + P +    G+Q    T    TPI
Sbjct: 567 IPRTTAFLPFTPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSLGAQPPTTTAAPPTPI 626

Query: 330 SLVKSIHAQLDAQIPVNADLSQRKPPAKATMLP 428
              +  H   D  +  +  +    PP +++ +P
Sbjct: 627 EPTQRAHQNSDLTLESSTPIEPPPPPIQSSDIP 659

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
 Frame = +3

Query: 213  PQEEGALQNSSEGKIQAPELK------------PLAGSQAVPKTEGVSTP 326
            P+ EG  Q  SEG I+APE +            P A  +A P+ EGV TP
Sbjct: 2263 PEAEGEAQPESEG-IEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETP 2311

>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +3

Query: 171 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH 350
           TP+  G  P R P     G      EG+    E     G++A+ +   VSTP S+     
Sbjct: 98  TPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPSSV----- 152

Query: 351 AQLDAQIPVNAD-LSQRKPPAKATMLPKRD 437
            Q   Q   +AD  ++R  P+    LP ++
Sbjct: 153 -QFFLQEDDSADRKAERTSPSSPAPLPHQE 181

>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 147  DLARRLPVTPRELGFTPFRNP------PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKT 308
            +LA +LP     +GF P +NP      PP ++    N+     Q+ + K + G Q+ P  
Sbjct: 1311 ELAPKLPTLAPFVGFNPLQNPAAGKKVPPSKKS--PNAGAAAHQSGQQKLVNGGQSQPAQ 1368

Query: 309  EGVSTP 326
            +  S P
Sbjct: 1369 QKTSPP 1374

>MSH5_YEAST (Q12175) MutS protein homolog 5|
          Length = 901

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 326 RCADALGFWNSLRSGK 279
           RC DA GF N LRSGK
Sbjct: 337 RCPDAFGFINQLRSGK 352

>SMO_MOUSE (P56726) Smoothened homolog precursor (SMO)|
          Length = 793

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 150 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 287
           +ARR  + P+++  TP   P P EE A     E +I +PEL+   G
Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANMWLVEAEI-SPELEKRLG 674

>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 216  QEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIPVNADLSQ 395
            Q++   Q ++  ++Q P+++  A S A  K  G  TP  L+K    +L          +Q
Sbjct: 2779 QQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQAQ 2838

Query: 396  RKPPAKATML 425
              PP  A  +
Sbjct: 2839 SAPPQPAAQV 2848

>RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3)|
          Length = 494

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 195 PFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPK--TEGVSTPISLVKSIHAQLDAQ 368
           P + P  Q+   L+ +    +QAP+ K L  SQ VP   T GVS P     ++ A     
Sbjct: 92  PSQKPKEQQRSVLRPAV---LQAPQPKAL--SQTVPSSGTNGVSLPADCTGAVPA----- 141

Query: 369 IPVNADLSQRKPPAKA 416
              + D + R+ PA+A
Sbjct: 142 --ASPDTAARRSPAEA 155

>PDM2_DROME (P31369) POU domain protein 2 (didymous protein) (Pdm-2) (dPOU-28)|
           (dOct2) (miti-mere)
          Length = 498

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +3

Query: 177 RELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQ 356
           R+L    F NP    +  LQNS +   Q   L+ +   Q        STP++    + + 
Sbjct: 158 RQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLA-KSPLRSP 216

Query: 357 LDAQIPVNADLSQRKPPAKAT 419
             + +P ++   QR PP   T
Sbjct: 217 SLSPVPRHSKSQQRTPPNSMT 237

>KRH2_DROME (Q9V447) Protein Kr-h2|
          Length = 276

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 210 PPQEEGALQNSSEGKIQAPELKPLAGSQAVP 302
           PP+ EGA  NSSE   Q  E    + SQ VP
Sbjct: 8   PPRSEGAQTNSSERSSQQQEQPQQSQSQNVP 38

>SMO_HUMAN (Q99835) Smoothened homolog precursor (SMO) (Gx protein)|
          Length = 787

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 150 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 287
           +ARR  + P+++  TP   P P EE A     E +I +PEL+   G
Sbjct: 626 VARRGAILPQDISVTPVATPVPPEEQANLWLVEAEI-SPELQKRLG 670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,048,126
Number of Sequences: 219361
Number of extensions: 960892
Number of successful extensions: 2948
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2944
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)