ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl55a05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... | 173 | 2e-43 | 2 | VIME_CRIGR (P48670) Vimentin (Fragment) | 31 | 2.1 | 3 | VIMB_CARAU (P48673) Vimentin beta | 31 | 2.1 | 4 | VIME_RAT (P31000) Vimentin | 31 | 2.1 | 5 | VIME_PANTR (Q5R1W8) Vimentin | 31 | 2.1 | 6 | VIME_MOUSE (P20152) Vimentin | 31 | 2.1 | 7 | VIME_MESAU (P02544) Vimentin | 31 | 2.1 | 8 | VIME_MACFA (Q4R4X4) Vimentin | 31 | 2.1 | 9 | VIME_HUMAN (P08670) Vimentin | 31 | 2.1 | 10 | VIME_CERAE (P84198) Vimentin | 31 | 2.1 | 11 | BSN_RAT (O88778) Bassoon protein | 30 | 2.7 | 12 | VIME_CHICK (P09654) Vimentin | 30 | 3.5 | 13 | PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... | 30 | 4.6 | 14 | VIME_CYPCA (Q92155) Vimentin | 29 | 7.8 | 15 | VIM4_XENLA (P24790) Vimentin 4 | 29 | 7.8 |
|---|
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 173 bits (439), Expect = 2e-43 Identities = 88/107 (82%), Positives = 93/107 (86%) Frame = +3 Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 335 MTTDQPVISL LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 336 RERIRYSRDQLLDLRKITDISEQILRLQQEIEAELHGDDQSWVRNDS 476 RER+RYSRDQLLDLRKITD++EQILRLQQEIEAEL+GDDQSWVRNDS Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDS 107
>VIME_CRIGR (P48670) Vimentin (Fragment)| Length = 448 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 124 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIIRLREKLQEEM 175
>VIMB_CARAU (P48673) Vimentin beta| Length = 450 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ + +R DQL++ + ++ E I RL+Q+++ E+ Sbjct: 128 GSSRVGDLYEDEMRELRRQVDQLINEKASVEVDRDNLGENIERLRQKLQEEM 179
>VIME_RAT (P31000) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_PANTR (Q5R1W8) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MOUSE (P20152) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MESAU (P02544) Vimentin| Length = 464 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 140 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 191
>VIME_MACFA (Q4R4X4) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIME_HUMAN (P08670) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_CERAE (P84198) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.4 bits (67), Expect = 2.7 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Frame = +3 Query: 87 PAPRRFPVDRAAAVPWSGSGPSAMTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSG 266 P P A P S + P A+ + PV APA +G Sbjct: 2288 PPRPELPAGGAREEPLSTTAPPAVIKEAPVAQ----------------APAPPPGQKPAG 2331 Query: 267 DFLRPHGGGASGVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQI--LRLQQEIEAE 437 D G G G + +R R ++QLL L + E++ LRLQ+E+E E Sbjct: 2332 DAAAGSGSGVLGRPVMEKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERE 2390
>VIME_CHICK (P09654) Vimentin| Length = 459 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ E +R DQL + + ++ ++ I+RL+++++ E+ Sbjct: 135 GTSRLGDLYEEEMRDVRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEM 186
>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC| 3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase) (CGS-PDE) (cGSPDE) Length = 941 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 11 RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151 RSQ P P E +++ FL+ P PP PC S + AL+ G++ Sbjct: 12 RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57
>VIME_CYPCA (Q92155) Vimentin| Length = 455 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SR+GDL+ + +R DQL + + ++ E I RL+++++ E+ Sbjct: 133 GSSRVGDLYQDEMRELRRQVDQLTNEKATVEVDRDNLGEDIERLKEKLQEEM 184
>VIM4_XENLA (P24790) Vimentin 4| Length = 463 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +3 Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 440 G SRIGDL+ E IR DQ ++ + ++ + + RL+++++ E+ Sbjct: 136 GTSRIGDLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEM 187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,288,591 Number of Sequences: 219361 Number of extensions: 852891 Number of successful extensions: 3527 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3526 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
