>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490|
          Length = 1058

 Score =  225 bits (573), Expect = 7e-59
 Identities = 105/137 (76%), Positives = 126/137 (91%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           KKVDERIRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+KS VKS PSVLWCY+N+L
Sbjct: 3   KKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRL 62

Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427
           +ISSH KKRAKQ+KK+ +RG +DPEK D FSLFL+  D+T+C+YKDSER+LGNTFG+CIL
Sbjct: 63  DISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGICIL 122

Query: 428 QDFEALTPNLLARTIET 478
           QDFEALTPNLLARTIET
Sbjct: 123 QDFEALTPNLLARTIET 139

>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score =  216 bits (549), Expect = 4e-56
 Identities = 100/137 (72%), Positives = 123/137 (89%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           KKVDERIRTLIENGV+ R RSMF+I+GDKSRDQIVNL++ML+K+ +K  PSVLWCY++KL
Sbjct: 3   KKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKDKL 62

Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427
           +ISSH++KR+KQ+K+L +RG +DPEK D FS  L+   +T+C+YKDSER+LGNTFGMCIL
Sbjct: 63  DISSHKQKRSKQLKRLRERGQLDPEKLDAFSRLLDVGRVTHCLYKDSERILGNTFGMCIL 122

Query: 428 QDFEALTPNLLARTIET 478
           QDFEALTPNLLARTIET
Sbjct: 123 QDFEALTPNLLARTIET 139

>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)|
          Length = 1025

 Score =  187 bits (476), Expect = 1e-47
 Identities = 83/137 (60%), Positives = 115/137 (83%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           KKVD RIR LIENGV +RQRS+F++VGD+ +DQ+V L++ML+K+ VK+RPSVLWCY+ +L
Sbjct: 4   KKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKEL 63

Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427
             SSHRKKR +Q++K ++ G ++ ++ DPF LF+  ++I YC Y ++ ++LGNTFGMC+L
Sbjct: 64  GFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGMCVL 123

Query: 428 QDFEALTPNLLARTIET 478
           QDFEALTPNLLART+ET
Sbjct: 124 QDFEALTPNLLARTVET 140

>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I|
          Length = 1033

 Score =  174 bits (440), Expect = 2e-43
 Identities = 80/138 (57%), Positives = 111/138 (80%), Gaps = 1/138 (0%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           K +D RI TLI+NG +++QRS F++VGD++RDQ+VNL+++L++S+V +RP+VLW Y+  L
Sbjct: 4   KALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKDL 63

Query: 248 -EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424
              +SHRKKR  +IKK ++RG+ DP   DPF LF   ++I YC YK+SE++LG T+GM +
Sbjct: 64  LGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILGQTYGMLV 123

Query: 425 LQDFEALTPNLLARTIET 478
           LQDFEALTPNLLARTIET
Sbjct: 124 LQDFEALTPNLLARTIET 141

>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w|
          Length = 1056

 Score =  162 bits (409), Expect = 7e-40
 Identities = 77/138 (55%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           K +D RI +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++  + +K   SVLW Y+ KL
Sbjct: 4   KAIDSRIPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKKL 63

Query: 248 -EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424
              +SHRKKR  +IKK ++RG  +  + DPF  F+   +I Y  YK+SE++LGNT+GMCI
Sbjct: 64  LGFTSHRKKRENKIKKEIKRGTREVNEMDPFESFISNQNIRYVYYKESEKILGNTYGMCI 123

Query: 425 LQDFEALTPNLLARTIET 478
           LQDFEALTPNLLARTIET
Sbjct: 124 LQDFEALTPNLLARTIET 141

>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I|
          Length = 1043

 Score =  160 bits (406), Expect = 2e-39
 Identities = 76/136 (55%), Positives = 102/136 (75%)
 Frame = +2

Query: 71  KVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLE 250
           K+D RIRT IENGV    RSMF +VGDK+RDQ+  L ++L+KS V +RP+VLWCY+ +L 
Sbjct: 4   KLDGRIRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKKELS 63

Query: 251 ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCILQ 430
            S+HR K+AK++KK           ADPF +F+ ++ I YC Y ++E++LGNTFG+ +LQ
Sbjct: 64  FSTHRAKKAKKMKKATTTISGSLPDADPFDVFISSTQIRYCYYNETEKILGNTFGVLVLQ 123

Query: 431 DFEALTPNLLARTIET 478
           DFEA+TPNLLARTIET
Sbjct: 124 DFEAMTPNLLARTIET 139

>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)|
          Length = 1008

 Score =  147 bits (370), Expect = 2e-35
 Identities = 77/138 (55%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
 Frame = +2

Query: 68  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247
           KK+D RIR +IENGV+   R+MFI++GDK+RDQ+  L  +L KS VK+RP+VLWCY+NK 
Sbjct: 4   KKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKNKD 63

Query: 248 E-ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424
           E IS+H KKRAK+I      G +D  +AD F  F   + I    Y ++  VLG T+G+C+
Sbjct: 64  EAISNHGKKRAKKIAV----GKVDVNEADLFDSFRVATTIHGRYYSETHAVLGRTYGVCV 119

Query: 425 LQDFEALTPNLLARTIET 478
           LQDFEALTPNLLART+ET
Sbjct: 120 LQDFEALTPNLLARTVET 137

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 163  PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 291
            P   P L     P  +A  + L++PQQ + QQ QEE +Q  Q+
Sbjct: 902  PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQ 944

>CN102_HUMAN (Q9H7Z3) Protein C14orf102|
          Length = 1164

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 176 LNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLET 355
           L Y +AK        V+WC   K +     K + K  KKL +  L +PE  + F L+ + 
Sbjct: 737 LQYEIAK--------VIWCLHTKNK--KRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQY 786

Query: 356 SDITYCM--YKDSERVLGNTFGM 418
           + + + +   +D+ +V     GM
Sbjct: 787 AHLEWLLGNTEDARKVFDTALGM 809

>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +2

Query: 152 KSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKAD 331
           KS+  +  L Y +AK        V+WC   K       K + K  KKL +  L +PE  +
Sbjct: 738 KSQLSLSWLRYEIAK--------VIWCLHTK---KKRLKSQGKSCKKLAKNLLKEPENRN 786

Query: 332 PFSLFLETSDITYCMYKDSERVLGNT 409
            F L+ +        Y   E +LGNT
Sbjct: 787 NFCLWKQ--------YAHLEWLLGNT 804

>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1239

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = +2

Query: 80  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISS 259
           ER  T  +N   + QR M   + D + D       +L+  R K  P   W +  + ++  
Sbjct: 425 ERYLTEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQE 477

Query: 260 HRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361
            ++K+AK++KK      +  E A PF   ++  D
Sbjct: 478 FKQKKAKKVKKPASASKLPIEGAGPFGDPMDQED 511

>GPA12_CAEEL (Q19572) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 274
           E+G     + M II   G+ + D++      + ++ + S   VL   RNKL I+    KR
Sbjct: 39  ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97

Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388
             +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 98  QVEVEKVMRFSVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>GPA12_CAEBR (Q613V4) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 274
           E+G     + M II   G+ + D++      + ++ + S   VL   RNKL I+    KR
Sbjct: 39  ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97

Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388
             +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 98  QVEVEKVMRFTVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)|
          Length = 508

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 372 Q*VMSEVSRKREKGSAFSGSMSPRCMSFLICLARFFLWLLISSL 241
           Q  +S + R+R+        MS    +FLIC   FFLW ++SSL
Sbjct: 336 QSTISTMRRERKAARTLGIIMS----AFLICWLPFFLWYIVSSL 375

>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein|
           (L(3)mbt-like 3 protein)
          Length = 883

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 175 PQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAHAARA 309
           P +   Q P+QV  ++    PQQA+     ++A+QA Q   A +A
Sbjct: 664 PSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQAQQAPQA 708

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 169 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 291
           RQ Q    Q P+Q+   + L  PQQ + QQP ++ +Q+ ++
Sbjct: 30  RQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQ 70

>UVRB_FUSNN (Q8RGR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 663

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +2

Query: 161 DQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKA 328
           + ++NL+Y + + + ++   V   +RNK +I     K  K+IKKL++   +D E+A
Sbjct: 596 EDLINLDYGIEEKKFENDKKV---FRNKTDIEKEITKLEKKIKKLVEE--LDFEQA 646

>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2|
          Length = 525

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 163 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 288
           P +QPQ    Q P+Q         PQQ   QQPQ++ +Q  Q
Sbjct: 124 PQQQPQQQPQQQPQQQ--------PQQQPQQQPQQQPQQQPQ 157

>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1216

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +2

Query: 80  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVN-LNYMLAKSRVKSRPSVLWCYRNKLEIS 256
           ER  T  ++   + QR M      KS  ++ N    +L+  R K  P   W +  + ++ 
Sbjct: 424 ERYLTEAQSTYEELQREM-----KKSLMELANDACQLLSGERYKEDP---WLWDLEWDLQ 475

Query: 257 SHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361
             ++K+AK++KK      +  E A PF   ++  D
Sbjct: 476 EFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQED 510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,818,996
Number of Sequences: 219361
Number of extensions: 827226
Number of successful extensions: 3466
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3451
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)