ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54h12 |
|---|---|
| Clone Library Name | barley_pub |
>CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator 4| (Signal-responsive protein 5) (Ethylene-induced calmodulin-binding protein d) (EICBP.d) (Ethylene-induced calmodulin-binding protein 4) (EICBP4) (AtFIN21) Length = 1016 Score = 65.1 bits (157), Expect = 4e-11 Identities = 31/50 (62%), Positives = 36/50 (72%) Frame = +1 Query: 184 TRWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 +RWLKP EVL ILQN E + N PQRP SGS LFN+RV +FFR DG+ Sbjct: 47 SRWLKPPEVLFILQNHESLTLTNTAPQRPTSGSLLLFNKRVLKFFRKDGH 96
>CMTA2_ARATH (Q6NPP4) Calmodulin-binding transcription activator 2| (Signal-responsive protein 4) (Ethylene-induced calmodulin-binding protein c) (EICBP.c) (AtER66) Length = 1050 Score = 63.5 bits (153), Expect = 1e-10 Identities = 27/49 (55%), Positives = 37/49 (75%) Frame = +1 Query: 187 RWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 RWL+P E+ +IL+N + F I + P RPPSGS FLF+R+V R+FR DG+ Sbjct: 25 RWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGH 73
>CMTA1_ARATH (Q9FY74) Calmodulin-binding transcription activator 1| (Signal-responsive protein 2) (Ethylene-induced calmodulin-binding protein b) (EICBP.b) Length = 1007 Score = 61.2 bits (147), Expect = 6e-10 Identities = 27/49 (55%), Positives = 36/49 (73%) Frame = +1 Query: 187 RWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 RWL+P E+ +ILQN F I + +P RP SGS FLF+R+V R+FR DG+ Sbjct: 28 RWLRPTEICEILQNYHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGH 76
>CMTA3_ARATH (Q8GSA7) Calmodulin-binding transcription activator 3| (Signal-responsive protein 1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Ethylene-induced calmodulin-binding protein 1) (EICBP1) Length = 1032 Score = 58.5 bits (140), Expect = 4e-09 Identities = 26/51 (50%), Positives = 35/51 (68%) Frame = +1 Query: 181 RTRWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 R RWL+P E+ +ILQN + F I P P SGS F+F+R+V R+FR DG+ Sbjct: 23 RHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGH 73
>CMTA5_ARATH (O23463) Calmodulin-binding transcription activator 5| (Signal-responsive protein 6) (Ethylene-induced calmodulin-binding protein f) (EICBP.f) Length = 923 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +1 Query: 184 TRWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 +RWL+P E+ +L N + F I+ + P SG+ LF+R++ R FR DG+ Sbjct: 34 SRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGH 83
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 122 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 36 P N +G P+G +GG+G + P PP Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 558
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 122 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 36 P N +G P+G +GG+G + P PP Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 558
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 122 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 36 P N +G P+G +GG+G + P PP Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 552
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 122 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 36 P N +G P+G +GG+G + P PP Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 552
>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)| Length = 1287 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -1 Query: 125 APASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GVS 9 AP+ T++G G RGG GG T + TR G + Sbjct: 548 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGAN 586
>DMI1_ORYSA (Q5N941) Putative ion channel DMI1, chloroplast precursor| Length = 965 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 107 SGEGTKNPRGGEGGEGTEYPQAPP 36 S G +P GG GGEG+ P+ PP Sbjct: 4 SDGGEASPSGGGGGEGSPDPRRPP 27
>ROS_HUMAN (P08922) Proto-oncogene tyrosine-protein kinase ROS precursor (EC| 2.7.10.1) (c-ros-1) Length = 2347 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Frame = +1 Query: 55 SVPSPPSPPRGFLVPSPEFVEAGAMXXXXXXXXXXXXXXXAVRTRWLKPREVLDILQNSE 234 +VPS P PR F++PS + + V RW KP+ +L E Sbjct: 1039 TVPSAPENPRIFILPSGKCCNKNEV---------------VVEFRWNKPKHENGVLTKFE 1083 Query: 235 LF-GIHNRTPQRPPSGSWFLFN 297 +F I N++ W N Sbjct: 1084 IFYNISNQSITNKTCEDWIAVN 1105
>THSA_SULSH (P46219) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) (Thermophilic factor 55 alpha) (TF55-alpha) (Ring complex subunit alpha) (Thermophilic factor 56) Length = 560 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1 Query: 104 GEGTKNPRGGEGGEGT 57 GEG+K GGEGG GT Sbjct: 540 GEGSKEESGGEGGAGT 555
>MO4L2_RAT (Q6QI89) Mortality factor 4-like protein 2 (MORF-related gene X| protein) (Transcription factor-like protein MRGX) (Liver regeneration-related protein LRRG00119) Length = 288 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 81 KTPGNGDGGSTSEVPQPPRKKRAR 104
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = +1 Query: 40 GACGYSVPSPPSPPRGFLVPSPEF 111 G G VP PP PP FL S F Sbjct: 913 GPPGEGVPGPPGPPGSFLTDSETF 936
>FZD7_MOUSE (Q61090) Frizzled 7 precursor (Frizzled-7) (Fz-7) (mFz7)| Length = 572 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 104 GEGTKNPRGGEGGEGTEYPQAP 39 G+ T + GG GG T YP AP Sbjct: 162 GQNTSDGSGGAGGSPTAYPTAP 183
>MO4L1_RAT (Q6AYU1) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) Length = 323 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 116 KTPGNGDGGSTSETPQPPRKKRAR 139
>MO4L1_PONPY (Q5NVP9) Mortality factor 4-like protein 1| Length = 323 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 116 KTPGNGDGGSTSETPQPPRKKRAR 139
>MO4L2_HUMAN (Q15014) Mortality factor 4-like protein 2 (MORF-related gene X| protein) (Transcription factor-like protein MRGX) (MSL3-2 protein) Length = 288 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 81 KTPGNGDGGSTSEAPQPPRKKRAR 104
>VGLH_HHV1E (P08356) Glycoprotein H precursor| Length = 838 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1 Query: 55 SVPSPPSPPRGFLVPSPE 108 + P P PPRGFL P E Sbjct: 54 NTPDPQKPPRGFLAPPDE 71
>VGLH_HHV11 (P06477) Glycoprotein H precursor| Length = 838 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1 Query: 55 SVPSPPSPPRGFLVPSPE 108 + P P PPRGFL P E Sbjct: 54 NTPDPQKPPRGFLAPPDE 71
>MO4L1_MOUSE (P60762) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) (Testis-expressed gene 189 protein) Length = 362 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 155 KTPGNGDGGSTSETPQPPRKKRAR 178
>MO4L1_HUMAN (Q9UBU8) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) (MSL3-1 protein) Length = 362 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 92 KNPRGGEGGEGTEYPQAPPRTRTR 21 K P G+GG +E PQ P + R R Sbjct: 155 KTPGNGDGGSTSETPQPPRKKRAR 178
>CMTA6_ARATH (Q9LSP8) Calmodulin-binding transcription activator 6| (Signal-responsive protein 3) (Ethylene-induced calmodulin-binding protein e) (EICBP.e) (Ethylene-induced calmodulin-binding protein 5) (EICBP5) Length = 838 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 181 RTRWLKPREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGY 333 ++RWL+P E+ IL G LF+R++ R FR DG+ Sbjct: 33 KSRWLRPNEIHAIL-----------------CGRIILFDRKMLRNFRKDGH 66
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 7 QDTPHLVLVLGGACGYSVPSPPSPPRGFLVPSPE 108 Q +P L G GYS P PPR ++ +P+ Sbjct: 1176 QPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQ 1209
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -1 Query: 110 NSGEGTKNPRGGEGGEGTEYPQAPP 36 N G G+ P+G G +G PQ PP Sbjct: 217 NPGIGSIGPKGDPGEQGPRGPQGPP 241
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 119 ASTNSGEGTKNPRGGEGGEGTEYPQAP 39 AS SG G K PRG +G G PQ P Sbjct: 20 ASCQSG-GLKGPRGAKGPRGDRGPQGP 45
>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 128 IAPASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR 21 +A ++S E + GG G E + PQ P+T+T+ Sbjct: 403 MAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTK 438 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,264,426 Number of Sequences: 219361 Number of extensions: 680212 Number of successful extensions: 3720 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3700 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
