ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
2dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
3dbj|AK108296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
4emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 1.1
5ref|NM_189389.1| Oryza sativa (japonica cultivar-group), predic... 40 4.4
6emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E1... 40 4.4
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
8emb|BX816872.1|CNS0AD5E Arabidopsis thaliana Full-length cDNA Co... 40 4.4
9dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
10gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complet... 40 4.4

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 214      gcccgagatgcaccatgcgatgcggttgcgctgcctcctc 253
                |||||||||| || | ||||||||| ||||||||||||||
Sbjct: 31491443 gcccgagatgtactacgcgatgcggctgcgctgcctcctc 31491482



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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 214    gcccgagatgcaccatgcgatgcggttgcgctgcctcctc 253
              |||||||||| || | ||||||||| ||||||||||||||
Sbjct: 126840 gcccgagatgtactacgcgatgcggctgcgctgcctcctc 126879



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>dbj|AK108296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-E06, full
           insert sequence
          Length = 787

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 214 gcccgagatgcaccatgcgatgcggttgcgctgcctcctc 253
           |||||||||| || | ||||||||| ||||||||||||||
Sbjct: 406 gcccgagatgtactacgcgatgcggctgcgctgcctcctc 367



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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 246    gcctcctccagcacccgccgc 266
              |||||||||||||||||||||
Sbjct: 131706 gcctcctccagcacccgccgc 131686



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>ref|NM_189389.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 cctcctccagcacccgccgc 266
           ||||||||||||||||||||
Sbjct: 69  cctcctccagcacccgccgc 88



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>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
             Contains the 5' end of a novel gene, the C1orf33 gene for
             chromosome 1 open reading frame 33, four novel genes, the 
             AKR7A3 gene for aldo-keto reductase family 7, member A3
             (aflatoxin aldehyde reductase), the  AKR7A2 gene for
             aldo-keto reductase family 7, member A2 (aflatoxin
             aldehyde reductase), the 3' end of the CAPZB gene for
             capping protein (actin filament) muscle Z-line, beta and
             two CpG islands, complete sequence
          Length = 154130

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ctgcctcctccagcacccgc 263
             ||||||||||||||||||||
Sbjct: 82647 ctgcctcctccagcacccgc 82628



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 247      cctcctccagcacccgccgc 266
                ||||||||||||||||||||
Sbjct: 42540127 cctcctccagcacccgccgc 42540146



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>emb|BX816872.1|CNS0AD5E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH73ZB08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  gtcgcggccggtcacgcgcc 62
           ||||||||||||||||||||
Sbjct: 146 gtcgcggccggtcacgcgcc 127



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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   cctcctccagcacccgccgc 266
             ||||||||||||||||||||
Sbjct: 61010 cctcctccagcacccgccgc 61029



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>gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complete sequence
          Length = 195922

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ctccgtctccctcccctccg 43
             ||||||||||||||||||||
Sbjct: 91167 ctccgtctccctcccctccg 91148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,655,228
Number of Sequences: 3902068
Number of extensions: 1655228
Number of successful extensions: 34962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34918
Number of HSP's gapped (non-prelim): 44
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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