>RNZ2_MOUSE (Q80Y81) Zinc phosphodiesterase ELAC protein 2 (EC 3.1.26.11)|
           (Ribonuclease Z 2) (RNase Z 2) (tRNase Z 2) (tRNA 3
           endonuclease 2) (ElaC homolog protein 2)
          Length = 831

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 393 VGERVNGGGEAGRVRPSAGP-EHLREEEPDGLGPGG 289
           +G R    G A R RPS  P  HLR  E  G GPGG
Sbjct: 11  LGLRTMSQGSARRPRPSKDPLRHLRTREKRGPGPGG 46

>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated|
           protein 5.10) (Ultrahigh sulfur keratin-associated
           protein 5.10)
          Length = 202

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 200 GRACCTGACCLRD---APSGTRCAWVGACSGQRGDKTPRGVGGRDGDGS 63
           G +CC   CC +          C+  G+C G +GD    G G + G GS
Sbjct: 39  GSSCCVPVCCCKPVCCCVPACSCSSCGSCGGSKGDCGSCG-GSKGGCGS 86

>DPO3X_MYCTU (P63975) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)|
          Length = 578

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 265 MPRPSAAHARRRLSPARTPRPRVA 194
           +PRPSAA A  +  PAR PRP +A
Sbjct: 393 VPRPSAAAAEPKHQPAREPRPVLA 416

>DPO3X_MYCBO (P63976) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)|
          Length = 578

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 265 MPRPSAAHARRRLSPARTPRPRVA 194
           +PRPSAA A  +  PAR PRP +A
Sbjct: 393 VPRPSAAAAEPKHQPAREPRPVLA 416

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 271 PHMPRPSAAHARRRLSPARTPRP 203
           PH+PRP   H    +SP  TP+P
Sbjct: 108 PHVPRPPIVHPPPIVSPPSTPKP 130

>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein|
           5.8) (Ultrahigh sulfur keratin-associated protein 5.8)
           (Keratin, ultra high-sulfur matrix protein B) (UHS
           keratin B) (UHS KerB)
          Length = 187

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -1

Query: 200 GRACCTGACCLRD---APSGTRCAWVGACSGQRGDKTPRGVGGRDGD 69
           G +CC   CC +          C+  G+C G +G +     GG  GD
Sbjct: 25  GSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGR--GSCGGSKGD 69

>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)|
          Length = 182

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 200 GRACCTGACCLRDAPSGTRC--AWVGACSGQRGDKTPRGVGGRDGDGS 63
           G +CC   CC   A S + C     G+C G +G     G G + G GS
Sbjct: 83  GSSCCKPVCCCVPACSCSSCGKGGCGSCGGSKGGCGSCG-GSKGGCGS 129

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein|
           Zimp10)
          Length = 1072

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -3

Query: 393 VGERVNGGGEAGRVRPSA---GPEHLREEEPDGLGPGGAHGRERLTCRAPAPR 244
           +G  +N  G A  + PS     P  + +  P G+ P G HG+       P PR
Sbjct: 348 MGGSLNPAGMAAGMTPSGMSGPPMGMNQPRPPGISPFGTHGQRMPQQTYPGPR 400

>EGSA_PICTO (Q6L0R7) Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)|
           (sn-glycerol-1-phosphate dehydrogenase) (G-1-P
           dehydrogenase) (Enantiomeric glycerophosphate synthase)
          Length = 350

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 363 AGRVRPSAGPEHLREEEPDGLGPGGA-HGRE 274
           AG  RP++G EHL     + LGPG + HG +
Sbjct: 240 AGSSRPASGSEHLFSHAIEILGPGSSIHGEQ 270

>HXD4_MOUSE (P10628) Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1)|
          Length = 250

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = -3

Query: 390 GERVNGGGEAGRVRPSAGPEHLREEEPDGLGPGGAHGRERLTCRAPAPRTHAGA 229
           GE+  GGG  G    SA P     +EP G  PG  +G     C AP P    GA
Sbjct: 58  GEQPFGGGGPGP--GSALPARGHGQEPSG--PGSHYGAPGEPCPAPPPAPLPGA 107

>MS84C_DROME (Q01644) Male-specific sperm protein Mst84Dc|
          Length = 55

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 188 CTGACCLRDAPSGTRCAWVGACSGQRGDKTP 96
           C G CC    P G RC   G+C G  G   P
Sbjct: 14  CCGPCC---GPCGPRCGPCGSCCGPCGPCGP 41

>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 191 CCTGACCLRDAPSGTRCAWVGACSGQRGDKTPRGVGGRDGDGS 63
           CC   CC   A S T C   G+C G +G     G G + G GS
Sbjct: 34  CCKPVCCCVPACSCTSC---GSCGGSKGCCGSCG-GSKGGCGS 72

>KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-associated protein|
           5.7) (Ultrahigh sulfur keratin-associated protein 5.7)
           (Keratin-associated protein 5-3) (Keratin-associated
           protein 5.3)
          Length = 165

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -1

Query: 200 GRACCTGACCLRD---APSGTRCAWVGACSGQRGDKTPRGVGGRDGDGS 63
           G +CC   CC +          C+  G+C G +G     G G + G GS
Sbjct: 32  GSSCCVPVCCCKPVCCCVPACSCSSCGSCGGSKGGCGSCG-GSKGGCGS 79

>Y1105_THEAC (Q9HJ67) UPF0189 protein Ta1105|
          Length = 196

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
 Frame = -3

Query: 381 VNGGGEAGRVRPSAGPE-------HLREEEPDGLGPGGA 286
           + GGG  G +  +AGPE         RE  P+GL PG A
Sbjct: 35  MGGGGVDGAIHSAAGPELNGELVKIRRERYPNGLPPGEA 73

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 351 RPSAGPEHLREEEPDGLGPG 292
           RP++G +  R  EP+ LGPG
Sbjct: 7   RPASGADSFRTPEPESLGPG 26

>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
            chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 262  PRPSAAHARRRLSPARTPRPR 200
            PRP    AR R  P R PRPR
Sbjct: 2367 PRPDRPRARDRPKPRRRPRPR 2387

>CHIB_MAIZE (P29023) Endochitinase B precursor (EC 3.2.1.14) (Seed chitinase B)|
           (Fragment)
          Length = 269

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 212 AAASGRACCTGACCLRDAPSGTRCAWVGACSGQRGDKTPRGVGGRDGDGSMVVAI 48
           AAA    C    CC +    GT   + G        ++ RG GG  G G+ V ++
Sbjct: 18  AAAQNCGCQPNVCCSKFGYCGTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASV 72

>COLL6_MIMIV (Q5UQ50) Collagen-like protein 6|
          Length = 1387

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 188 CTGACCLRDAPSGTRCAWVGACSGQRGDKTPRGVGGRDGD 69
           C G CC +    G  C        Q+GDK   G  G +G+
Sbjct: 74  CNGYCCFKGCKGGFFC--------QKGDKGNNGNNGNNGE 105

>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor|
          Length = 3176

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -1

Query: 179  ACCLRDAPSGTRCAWVGACSGQRGDK------TPRGVGGRDG 72
            ACC      G  C     CSGQRGD+       P+G+ G DG
Sbjct: 2028 ACC------GVPCK----CSGQRGDRGPIGSIGPKGIPGEDG 2059

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 167 RDAPSGTRCAWVGACSGQRGDKTPRGVGGRDGD 69
           R  PSG R        G RG++ P G  GRDGD
Sbjct: 31  RKGPSGDR--------GPRGERGPPGPPGRDGD 55

>SP17_MACEU (O62770) Sperm surface protein Sp17 (Sperm autoantigenic protein|
           17)
          Length = 153

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 136 HAHRVPDGASRRQHAPVQQARPE 204
           HA +VP GA+  + AP +++ PE
Sbjct: 72  HAFKVPSGATESKEAPPEKSEPE 94

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 274 TPHMPRPSAAHARRRLSPARTPRPRVALAAPG 179
           T + P+PS +  R+R  P+R+P PR   + PG
Sbjct: 20  TSYSPQPSVS--RKRSPPSRSPSPRRRRSPPG 49

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -1

Query: 224 SRAYAAASGRACCTGACCLRDAPSGTRCAWVGACSGQRGDKTPRGVGGRDG 72
           S   A A G+    G   L   P       VG   G RGD  PRG  G  G
Sbjct: 539 SPGVAGAKGQGGPPGPAGLVGLPGERGPKGVGGSKGSRGDIGPRGKAGERG 589

>ATG4D_HUMAN (Q86TL0) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related|
           protein 4 homolog D) (Autophagin-4) (Autophagy-related
           cysteine endopeptidase 4) (AUT-like 4 cysteine
           endopeptidase)
          Length = 474

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 366 EAGRVRPSAG-PEHLREEEPDGLGPGGAHG 280
           E  R RP A  P   R  +P+GLGP GA G
Sbjct: 17  EDARRRPEARRPRGPRGPDPNGLGPSGASG 46

>NOC2L_HUMAN (Q9Y3T9) Nucleolar complex protein 2 homolog (NOC2 protein homolog)|
          Length = 749

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 131 GACSGQRGDKTPRGVGGRDGDGSMVVA-IFLWRQ 33
           GA  G+ GD+ PRG+ G+     + VA +  W+Q
Sbjct: 126 GAEEGEDGDRVPRGLKGKKNSVPVTVAMVERWKQ 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,345,850
Number of Sequences: 219361
Number of extensions: 751194
Number of successful extensions: 3128
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)