ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 190 2e-45
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 190 2e-45
3gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 190 2e-45
4dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.34
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.34
8dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
9dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
10dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
11dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
12dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
13gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, com... 44 0.34
14gb|AC114622.12| Mus musculus chromosome 5, clone RP24-103L18, co... 44 0.34
15ref|XM_464982.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
16dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.3
18dbj|AK058880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
19emb|AL356488.22| Human DNA sequence from clone RP5-1065J22 on ch... 42 1.3
20dbj|D31792.1| Streptomyces griseus DNA for serine/threonine prot... 42 1.3
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.3
22ref|NM_184257.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
23gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.3
24ref|XM_478379.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
25ref|XM_473500.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
26gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.3
27gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.3
28gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.3
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
30ref|XM_546610.2| PREDICTED: Canis familiaris similar to Rho guan... 40 5.3
31ref|XM_855303.1| PREDICTED: Canis familiaris similar to Rho guan... 40 5.3
32ref|XM_844898.1| PREDICTED: Canis familiaris similar to Rho guan... 40 5.3
33gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 40 5.3
34ref|XM_969423.1| PREDICTED: Tribolium castaneum similar to CG182... 40 5.3
35gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.3
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.3
37emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.3
38emb|AL606694.3|OSJN00110 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
39emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
40emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 40 5.3
41emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for bi... 40 5.3
42gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 5.3
43gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
44gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.3
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
49gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasm... 40 5.3
50gb|AF271223.1|AF271223 Halophytophthora batemanensis internal tr... 40 5.3
51dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
52dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
53dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
54dbj|AK119451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
55dbj|AK106227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
56dbj|AK101410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
57gb|DQ335637.1| Halophytophthora batemanensis strain CBS 679.84 i... 40 5.3 
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score =  190 bits (96), Expect = 2e-45
 Identities = 132/144 (91%)
 Strand = Plus / Plus

                                                                         
Query: 208   gcggcgtacgcgcgggagataggcgcctgcgtgcgtgcgcggcgctggggcgcggcatgt 267
             ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || 
Sbjct: 83587 gcggcctacgcgcgggagatcggcgcctgcgtgcgcgcgcggcggtggggcgcggcgtgc 83646

                                                                         
Query: 268   gaggcgttcgcggccatgcgcgccgccggggccgagcccgtcaggttcctcctcccgcag 327
             |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 83647 gaggcgttcgcggcgatgcgcgccgcgggggccgcgcccgacaggttcctcctcccgcag 83706

                                     
Query: 328   gtgctccgggcctgcgctggggcg 351
             |||||||| |||||||| ||||||
Sbjct: 83707 gtgctccgcgcctgcgcgggggcg 83730
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  190 bits (96), Expect = 2e-45
 Identities = 132/144 (91%)
 Strand = Plus / Minus

                                                                            
Query: 208      gcggcgtacgcgcgggagataggcgcctgcgtgcgtgcgcggcgctggggcgcggcatgt 267
                ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || 
Sbjct: 17288692 gcggcctacgcgcgggagatcggcgcctgcgtgcgcgcgcggcggtggggcgcggcgtgc 17288633

                                                                            
Query: 268      gaggcgttcgcggccatgcgcgccgccggggccgagcccgtcaggttcctcctcccgcag 327
                |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 17288632 gaggcgttcgcggcgatgcgcgccgcgggggccgcgcccgacaggttcctcctcccgcag 17288573

                                        
Query: 328      gtgctccgggcctgcgctggggcg 351
                |||||||| |||||||| ||||||
Sbjct: 17288572 gtgctccgcgcctgcgcgggggcg 17288549
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  190 bits (96), Expect = 2e-45
 Identities = 132/144 (91%)
 Strand = Plus / Minus

                                                                            
Query: 208      gcggcgtacgcgcgggagataggcgcctgcgtgcgtgcgcggcgctggggcgcggcatgt 267
                ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || 
Sbjct: 17297732 gcggcctacgcgcgggagatcggcgcctgcgtgcgcgcgcggcggtggggcgcggcgtgc 17297673

                                                                            
Query: 268      gaggcgttcgcggccatgcgcgccgccggggccgagcccgtcaggttcctcctcccgcag 327
                |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 17297672 gaggcgttcgcggcgatgcgcgccgcgggggccgcgcccgacaggttcctcctcccgcag 17297613

                                        
Query: 328      gtgctccgggcctgcgctggggcg 351
                |||||||| |||||||| ||||||
Sbjct: 17297612 gtgctccgcgcctgcgcgggggcg 17297589
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 279     ggccatgcgcgccgccggggccgagc 304
               |||| |||||||||||||||||||||
Sbjct: 4118191 ggccctgcgcgccgccggggccgagc 4118216



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 284     tgcgcgccgccggggccgag 303
               ||||||||||||||||||||
Sbjct: 4595136 tgcgcgccgccggggccgag 4595155
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 355     gcgccccgcctcgccgccgccg 376
               ||||||||||||||||||||||
Sbjct: 5859191 gcgccccgcctcgccgccgccg 5859212
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 204      ggccgcggcgtacgcgcgggag 225
                ||||||||||||||||||||||
Sbjct: 19332357 ggccgcggcgtacgcgcgggag 19332378



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 355      gcgccccgcctcgccgccgcc 375
                |||||||||||||||||||||
Sbjct: 10758125 gcgccccgcctcgccgccgcc 10758145
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 268    gaggcgttcgcggccatgcgcgccgccggggccg 301
              |||||||||||||||  |||||||||||| ||||
Sbjct: 591773 gaggcgttcgcggccgcgcgcgccgccggcgccg 591806



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     tcctcccgcaggtgctccgg 336
               ||||||||||||||||||||
Sbjct: 4616369 tcctcccgcaggtgctccgg 4616350
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>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0701E03
          Length = 183245

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 355    gcgccccgcctcgccgccgccg 376
              ||||||||||||||||||||||
Sbjct: 174720 gcgccccgcctcgccgccgccg 174741
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0537F07
          Length = 147724

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 355   gcgccccgcctcgccgccgccg 376
             ||||||||||||||||||||||
Sbjct: 59966 gcgccccgcctcgccgccgccg 59987
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>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0475F05
          Length = 147522

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 204   ggccgcggcgtacgcgcgggag 225
             ||||||||||||||||||||||
Sbjct: 17848 ggccgcggcgtacgcgcgggag 17869
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>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0458B05
          Length = 144917

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 204    ggccgcggcgtacgcgcgggag 225
              ||||||||||||||||||||||
Sbjct: 100155 ggccgcggcgtacgcgcgggag 100176
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>dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062N20, full
            insert sequence
          Length = 1595

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 355  gcgccccgcctcgccgccgccg 376
            ||||||||||||||||||||||
Sbjct: 1202 gcgccccgcctcgccgccgccg 1181
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>gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, complete sequence
          Length = 208233

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 64    ctgccgtccccgtctctgcctc 85
             ||||||||||||||||||||||
Sbjct: 34743 ctgccgtccccgtctctgcctc 34722
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>gb|AC114622.12| Mus musculus chromosome 5, clone RP24-103L18, complete sequence
          Length = 162467

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     ctgccgtccccgtctctgcctc 85
              ||||||||||||||||||||||
Sbjct: 152971 ctgccgtccccgtctctgcctc 152950
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>ref|XM_464982.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1363

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 355 gcgccccgcctcgccgccgcc 375
           |||||||||||||||||||||
Sbjct: 61  gcgccccgcctcgccgccgcc 81
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_D03
          Length = 169378

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 355   gcgccccgcctcgccgccgcc 375
             |||||||||||||||||||||
Sbjct: 97606 gcgccccgcctcgccgccgcc 97626
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 284     tgcgcgccgccggggccgagc 304
               |||||||||||||||||||||
Sbjct: 1136127 tgcgcgccgccggggccgagc 1136147
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>dbj|AK058880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B05, full
           insert sequence
          Length = 1363

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 355 gcgccccgcctcgccgccgcc 375
           |||||||||||||||||||||
Sbjct: 61  gcgccccgcctcgccgccgcc 81
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>emb|AL356488.22| Human DNA sequence from clone RP5-1065J22 on chromosome 1p13.2-21.1
             Contains the 3' of a novel gene a poly(rC) binding protein
             1 (PCBP1) pseudogene, the gene for protein x 013 (AD-020)
             and two CpG islands, complete sequence
          Length = 32414

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 366   cgccgccgccgttcacgcgctcgcc 390
             ||||||||||||||||| |||||||
Sbjct: 23310 cgccgccgccgttcacgtgctcgcc 23286
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>dbj|D31792.1| Streptomyces griseus DNA for serine/threonine protein kinases,
            complete cds
          Length = 3866

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  tgcgcgccgccggggccgagc 304
            |||||||||||||||||||||
Sbjct: 2566 tgcgcgccgccggggccgagc 2546
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 284     tgcgcgccgccggggccgag 303
               ||||||||||||||||||||
Sbjct: 3166501 tgcgcgccgccggggccgag 3166482



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   tcgcggccatgcgcgccgccgggg 298
             |||| |||||||||||||||||||
Sbjct: 25091 tcgctgccatgcgcgccgccgggg 25114
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>ref|NM_184257.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 gccccgcctcgccgccgccg 376
           ||||||||||||||||||||
Sbjct: 436 gccccgcctcgccgccgccg 417
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     gcgcctgcgtgcgtgcgcgg 249
               ||||||||||||||||||||
Sbjct: 3597602 gcgcctgcgtgcgtgcgcgg 3597583
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>ref|XM_478379.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3184

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cgcgccccgcctcgccgccgccgt 377
           ||||| ||||||||||||||||||
Sbjct: 343 cgcgcgccgcctcgccgccgccgt 366
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>ref|XM_473500.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 gccccgcctcgccgccgccg 376
           ||||||||||||||||||||
Sbjct: 501 gccccgcctcgccgccgccg 520
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 276     cgcggccatgcgcgccgccg 295
               ||||||||||||||||||||
Sbjct: 1025151 cgcggccatgcgcgccgccg 1025132
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     cgcgccccgcctcgccgccg 373
               ||||||||||||||||||||
Sbjct: 2747913 cgcgccccgcctcgccgccg 2747894
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     cgcggccatgcgcgccgccg 295
               ||||||||||||||||||||
Sbjct: 2540537 cgcggccatgcgcgccgccg 2540556
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 249      gcgctggggcgcggcatgtg 268
                ||||||||||||||||||||
Sbjct: 10312378 gcgctggggcgcggcatgtg 10312359
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>ref|XM_546610.2| PREDICTED: Canis familiaris similar to Rho guanine exchange factor
            15, transcript variant 1 (LOC489492), mRNA
          Length = 3018

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  ccacgcgcaccgggtgccgg 154
            ||||||||||||||||||||
Sbjct: 2750 ccacgcgcaccgggtgccgg 2731
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>ref|XM_855303.1| PREDICTED: Canis familiaris similar to Rho guanine exchange factor
            15, transcript variant 4 (LOC489492), mRNA
          Length = 2926

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  ccacgcgcaccgggtgccgg 154
            ||||||||||||||||||||
Sbjct: 2658 ccacgcgcaccgggtgccgg 2639
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>ref|XM_844898.1| PREDICTED: Canis familiaris similar to Rho guanine exchange factor
            15, transcript variant 3 (LOC489492), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  ccacgcgcaccgggtgccgg 154
            ||||||||||||||||||||
Sbjct: 2705 ccacgcgcaccgggtgccgg 2686
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>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tgctgccgtccccgtctctg 81
             ||||||||||||||||||||
Sbjct: 25178 tgctgccgtccccgtctctg 25159
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>ref|XM_969423.1| PREDICTED: Tribolium castaneum similar to CG18250-PA, isoform A
            (LOC663372), mRNA
          Length = 3345

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cgccgccgccgttcacgcgc 385
            ||||||||||||||||||||
Sbjct: 3254 cgccgccgccgttcacgcgc 3273
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     accaccatgctgccgtcccc 74
              ||||||||||||||||||||
Sbjct: 679580 accaccatgctgccgtcccc 679561
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 270    ggcgttcgcggccatgcgcgccgccggg 297
              |||||| |||||||||||||| ||||||
Sbjct: 714101 ggcgttggcggccatgcgcgcggccggg 714074
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 276     cgcggccatgcgcgccgccg 295
               ||||||||||||||||||||
Sbjct: 1841974 cgcggccatgcgcgccgccg 1841955
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>emb|AL606694.3|OSJN00110 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0078D11,
             complete sequence
          Length = 115006

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   gccccgcctcgccgccgccg 376
             ||||||||||||||||||||
Sbjct: 16287 gccccgcctcgccgccgccg 16306
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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
              complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    gccccgcctcgccgccgccg 376
              ||||||||||||||||||||
Sbjct: 137075 gccccgcctcgccgccgccg 137094
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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ccgaggccgcggcgtacgcg 219
             ||||||||||||||||||||
Sbjct: 68471 ccgaggccgcggcgtacgcg 68490
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>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ccgaggccgcggcgtacgcg 219
             ||||||||||||||||||||
Sbjct: 75094 ccgaggccgcggcgtacgcg 75113
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gcgctggggcgcggcatgtg 268
             ||||||||||||||||||||
Sbjct: 25844 gcgctggggcgcggcatgtg 25825
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 285     gcgcgccgccggggccgagcccgtcagg 312
               |||||||||||||||||||  |||||||
Sbjct: 1265523 gcgcgccgccggggccgagagcgtcagg 1265550
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 354     cgcgccccgcctcgccgccg 373
               ||||||||||||||||||||
Sbjct: 1200862 cgcgccccgcctcgccgccg 1200881
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 357      gccccgcctcgccgccgccg 376
                ||||||||||||||||||||
Sbjct: 28129850 gccccgcctcgccgccgccg 28129869
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 354      cgcgccccgcctcgccgccgccgt 377
                ||||| ||||||||||||||||||
Sbjct: 19615144 cgcgcgccgcctcgccgccgccgt 19615167
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 249      gcgctggggcgcggcatgtg 268
                ||||||||||||||||||||
Sbjct: 10310479 gcgctggggcgcggcatgtg 10310460
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     gccccgcctcgccgccgccg 376
               ||||||||||||||||||||
Sbjct: 1801703 gccccgcctcgccgccgccg 1801722
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>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete
             sequence
          Length = 96742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   cgccgccgttcacgcgctcg 388
             ||||||||||||||||||||
Sbjct: 37641 cgccgccgttcacgcgctcg 37660
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>gb|AF271223.1|AF271223 Halophytophthora batemanensis internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 915

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 tgcgtgcgtgcgcggcgctg 254
           ||||||||||||||||||||
Sbjct: 578 tgcgtgcgtgcgcggcgctg 597
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>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   gccccgcctcgccgccgccg 376
             ||||||||||||||||||||
Sbjct: 43085 gccccgcctcgccgccgccg 43104
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    cgcgccccgcctcgccgccgccgt 377
              ||||| ||||||||||||||||||
Sbjct: 158488 cgcgcgccgcctcgccgccgccgt 158511
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   cgcgccccgcctcgccgccgccgt 377
             ||||| ||||||||||||||||||
Sbjct: 53794 cgcgcgccgcctcgccgccgccgt 53817
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>dbj|AK119451.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D09, full
           insert sequence
          Length = 3751

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cgcgccccgcctcgccgccgccgt 377
           ||||| ||||||||||||||||||
Sbjct: 342 cgcgcgccgcctcgccgccgccgt 365
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>dbj|AK106227.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A09, full
           insert sequence
          Length = 2144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cgcgccccgcctcgccgccgccgt 377
           ||||| ||||||||||||||||||
Sbjct: 347 cgcgcgccgcctcgccgccgccgt 370
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>dbj|AK101410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I20, full
           insert sequence
          Length = 3184

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cgcgccccgcctcgccgccgccgt 377
           ||||| ||||||||||||||||||
Sbjct: 343 cgcgcgccgcctcgccgccgccgt 366
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>gb|DQ335637.1| Halophytophthora batemanensis strain CBS 679.84 internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence
          Length = 918

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 tgcgtgcgtgcgcggcgctg 254
           ||||||||||||||||||||
Sbjct: 580 tgcgtgcgtgcgcggcgctg 599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,647,633
Number of Sequences: 3902068
Number of extensions: 2647633
Number of successful extensions: 61398
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58184
Number of HSP's gapped (non-prelim): 3214
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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