ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
2dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
3ref|NM_116732.2| Arabidopsis thaliana nucleotide binding AT4G049... 64 4e-07
4gb|AY096634.1| Arabidopsis thaliana putative WD-repeat membrane ... 64 4e-07
5gb|AY059784.1| Arabidopsis thaliana putative WD-repeat membrane ... 64 4e-07
6emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 58 2e-05
7gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1 58 2e-05
8emb|AL138883.12| Human DNA sequence from clone RP1-23G18 on chro... 44 0.37
9gb|AE015451.1| Pseudomonas putida KT2440 complete genome 44 0.37
10ref|NM_188706.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
11gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complet... 42 1.5
12gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chro... 42 1.5
16ref|NM_191199.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
17gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
18gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
19gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
20gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
21gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.8
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
23gb|AF314590.3| Bradyrhizobium japonicum putative cyclic NTP-bind... 40 5.8
24gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
25emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
26emb|AL663012.3|OSJN00217 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
27emb|AL662980.3|OSJN00185 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
28gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.8
29emb|CR354346.1| Gallus gallus finished cDNA, clone ChEST76l18 40 5.8
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
36emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
37gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone ... 40 5.8
38dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome... 40 5.8
40dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
42dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
43dbj|AP005924.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44dbj|AK122148.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
45dbj|AK110780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
46dbj|AK073826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
48gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
49emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 40 5.8
50emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.8
51emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
52emb|AL731612.3|OSJN00254 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
53emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
54emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
55emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
56emb|AL732645.4|CNS08C9K Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
57emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.8
58emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
59emb|AL731750.3|CNS08C7Z Oryza sativa chromosome 12, . BAC OJ1055... 40 5.8
60gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromoso... 40 5.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 3e-51
 Identities = 124/130 (95%)
 Strand = Plus / Plus

                                                                            
Query: 164      gatggggatcttcgagccgttccgcgcgatcgggtacatcaccacgggcggcgtgccctt 223
                ||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||
Sbjct: 25920276 gatggggatcttcgagccgttccgcgccatcgggtacatcacggccggcggcgtgccctt 25920335

                                                                            
Query: 224      ctccctgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttcca 283
                |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 25920336 ctccgtgcagcgcctcggcaccgagaccttcgtcgccgtcagcgtcggcaaggccttcca 25920395

                          
Query: 284      cgtctacaac 293
                ||||||||||
Sbjct: 25920396 cgtctacaac 25920405



 Score =  113 bits (57), Expect = 5e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                            
Query: 321      ggacctcaactgcccaagaagatccgcgcccttgcatccttcaaggaatacacatttgct 380
                ||||||||| |||||||||||||||| || |||||||| | |||||| || |||||||||
Sbjct: 25920889 ggacctcaattgcccaagaagatccgtgctcttgcatcgtacaaggattatacatttgct 25920948

                                                             
Query: 381      gcgtacggaagcgatatcgcggttttcaaacggactgatctggtg 425
                ||||| ||||| |||||||| ||||||||||| ||||||| ||||
Sbjct: 25920949 gcgtatggaagtgatatcgctgttttcaaacgaactgatcaggtg 25920993



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 83       cctctaaaaccctcgccgccggcgcaccc 111
                |||||||||||||||||| ||||||||||
Sbjct: 25920145 cctctaaaaccctcgccggcggcgcaccc 25920173



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 8869141 ttcctcctcgcgccgccgcc 8869122
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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score =  210 bits (106), Expect = 3e-51
 Identities = 124/130 (95%)
 Strand = Plus / Plus

                                                                         
Query: 164   gatggggatcttcgagccgttccgcgcgatcgggtacatcaccacgggcggcgtgccctt 223
             ||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||
Sbjct: 75374 gatggggatcttcgagccgttccgcgccatcgggtacatcacggccggcggcgtgccctt 75433

                                                                         
Query: 224   ctccctgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttcca 283
             |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 75434 ctccgtgcagcgcctcggcaccgagaccttcgtcgccgtcagcgtcggcaaggccttcca 75493

                       
Query: 284   cgtctacaac 293
             ||||||||||
Sbjct: 75494 cgtctacaac 75503



 Score =  113 bits (57), Expect = 5e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 321   ggacctcaactgcccaagaagatccgcgcccttgcatccttcaaggaatacacatttgct 380
             ||||||||| |||||||||||||||| || |||||||| | |||||| || |||||||||
Sbjct: 75987 ggacctcaattgcccaagaagatccgtgctcttgcatcgtacaaggattatacatttgct 76046

                                                          
Query: 381   gcgtacggaagcgatatcgcggttttcaaacggactgatctggtg 425
             ||||| ||||| |||||||| ||||||||||| ||||||| ||||
Sbjct: 76047 gcgtatggaagtgatatcgctgttttcaaacgaactgatcaggtg 76091



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 83    cctctaaaaccctcgccgccggcgcaccc 111
             |||||||||||||||||| ||||||||||
Sbjct: 75243 cctctaaaaccctcgccggcggcgcaccc 75271
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>ref|NM_116732.2| Arabidopsis thaliana nucleotide binding AT4G04940 mRNA, complete
           cds
          Length = 3058

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 243 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 302
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 217 accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 276

               
Query: 303 ctca 306
           ||||
Sbjct: 277 ctca 280
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>gb|AY096634.1| Arabidopsis thaliana putative WD-repeat membrane protein
           (At4g04940) mRNA, complete cds
          Length = 2764

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 243 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 302
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 76  accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 135

               
Query: 303 ctca 306
           ||||
Sbjct: 136 ctca 139
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>gb|AY059784.1| Arabidopsis thaliana putative WD-repeat membrane protein
           (At4g04940) mRNA, complete cds
          Length = 3056

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 243 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 302
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 200 accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 259

               
Query: 303 ctca 306
           ||||
Sbjct: 260 ctca 263
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>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 243   accgagaccttcgtcaccgtcagcgtcggcaaggccttcca 283
             |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 48992 accgagactttcgtcaccgtcagcgtcggcaaagctttcca 48952
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>gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1
          Length = 53778

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 243   accgagaccttcgtcaccgtcagcgtcggcaaggccttcca 283
             |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 41045 accgagactttcgtcaccgtcagcgtcggcaaagctttcca 41005
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>emb|AL138883.12| Human DNA sequence from clone RP1-23G18 on chromosome 6 Contains the 5'
             end of the GMPR gene for monophosphate reductase and a CpG
             island, complete sequence
          Length = 45974

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 55    ttcctcctcgcgccgccgcccc 76
             ||||||||||||||||||||||
Sbjct: 28033 ttcctcctcgcgccgccgcccc 28012
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 262     tcagcgtcggcaaggccttcca 283
               ||||||||||||||||||||||
Sbjct: 3118989 tcagcgtcggcaaggccttcca 3118968
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>ref|NM_188706.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tcctcctcgcgccgccgcccc 76
           |||||||||||||||||||||
Sbjct: 251 tcctcctcgcgccgccgcccc 271
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>gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complete sequence
          Length = 191781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    ccgccgcggccggggggaggg 164
              |||||||||||||||||||||
Sbjct: 116898 ccgccgcggccggggggaggg 116918
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 130     gaagccctcgacgtccgccgcggcc 154
               |||||||||||||||| ||||||||
Sbjct: 3871302 gaagccctcgacgtcctccgcggcc 3871278
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 56      tcctcctcgcgccgccgcccc 76
               |||||||||||||||||||||
Sbjct: 7743493 tcctcctcgcgccgccgcccc 7743513



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 268      tcggcaaggccttccacgtctaca 291
                |||||||||| |||||||||||||
Sbjct: 31280817 tcggcaaggcgttccacgtctaca 31280794



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 18791220 ttcctcctcgcgccgccgcc 18791239
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>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0010K01
          Length = 144404

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    tcctcctcgcgccgccgcccc 76
             |||||||||||||||||||||
Sbjct: 46074 tcctcctcgcgccgccgcccc 46094
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>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete
              sequence
          Length = 219568

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    ccgccgcggccggggggaggg 164
              |||||||||||||||||||||
Sbjct: 186113 ccgccgcggccggggggaggg 186093
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>ref|NM_191199.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 268 tcggcaaggccttccacgtctaca 291
           |||||||||| |||||||||||||
Sbjct: 455 tcggcaaggcgttccacgtctaca 478
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>gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0093C16, complete sequence
          Length = 206612

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 74751 ttcctcctcgcgccgccgcc 74770



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 44254 ttcctcctcgcgccgccgcc 44273
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>gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B04,
             complete sequence
          Length = 95383

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 24226 ttcctcctcgcgccgccgcc 24245
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>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 31720 ttcctcctcgcgccgccgcc 31739
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12
              map E60284SA, complete sequence
          Length = 139190

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 120697 ttcctcctcgcgccgccgcc 120678
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     gatcttcgagccgttccgcg 189
               ||||||||||||||||||||
Sbjct: 2681512 gatcttcgagccgttccgcg 2681531
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 13941791 ttcctcctcgcgccgccgcc 13941810
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>gb|AF314590.3| Bradyrhizobium japonicum putative cyclic NTP-binding protein gene,
             partial cds; LuxA-like protein, MDO-like protein, and
             AraC-like protein genes, complete cds; nap operon,
             complete sequence; exodeoxyribosylnuclease EdrN (edrN)
             genes, complete cds; and putative sensor protein gene,
             partial cds
          Length = 11020

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gcaccgagaccttcgtcacc 260
             ||||||||||||||||||||
Sbjct: 10003 gcaccgagaccttcgtcacc 9984
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 69691 ttcctcctcgcgccgccgcc 69672
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>emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016B03,
             complete sequence
          Length = 125780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 35495 ttcctcctcgcgccgccgcc 35514



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 30305 ttcctcctcgcgccgccgcc 30324
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>emb|AL663012.3|OSJN00217 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0069N01,
             complete sequence
          Length = 180264

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 27398 ttcctcctcgcgccgccgcc 27379
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>emb|AL662980.3|OSJN00185 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0080E14,
             complete sequence
          Length = 148064

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 65243 ttcctcctcgcgccgccgcc 65224
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 260     cgtcagcgtcggcaaggcct 279
               ||||||||||||||||||||
Sbjct: 2539541 cgtcagcgtcggcaaggcct 2539522
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>emb|CR354346.1| Gallus gallus finished cDNA, clone ChEST76l18
          Length = 846

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 ccgccgcggccggggggagg 163
           ||||||||||||||||||||
Sbjct: 20  ccgccgcggccggggggagg 39
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 11213636 ttcctcctcgcgccgccgcc 11213655



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 10776925 ttcctcctcgcgccgccgcc 10776906



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 3838262 ttcctcctcgcgccgccgcc 3838243



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 2310176 ttcctcctcgcgccgccgcc 2310195



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 2304986 ttcctcctcgcgccgccgcc 2305005
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 23687909 ttcctcctcgcgccgccgcc 23687890



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 17916936 ttcctcctcgcgccgccgcc 17916955



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 14360521 ttcctcctcgcgccgccgcc 14360540



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 11015490 ttcctcctcgcgccgccgcc 11015471



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 10261028 ttcctcctcgcgccgccgcc 10261009



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 8214111 ttcctcctcgcgccgccgcc 8214130
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 5803168 ttcctcctcgcgccgccgcc 5803187
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 9844124 ttcctcctcgcgccgccgcc 9844143



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 9813627 ttcctcctcgcgccgccgcc 9813646



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 8445956 ttcctcctcgcgccgccgcc 8445975
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 13936766 ttcctcctcgcgccgccgcc 13936785
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 9379677 ttcctcctcgcgccgccgcc 9379658



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 9341143 ttcctcctcgcgccgccgcc 9341124



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 9293967 ttcctcctcgcgccgccgcc 9293948
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>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04,
              complete sequence
          Length = 188209

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 176152 ttcctcctcgcgccgccgcc 176133
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>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22,
             complete sequence
          Length = 128256

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 25747 ttcctcctcgcgccgccgcc 25766
to top
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   tcggcaaggccttccacgtctaca 291
             |||||||||| |||||||||||||
Sbjct: 35100 tcggcaaggcgttccacgtctaca 35077
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>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence
          Length = 172103

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 148   cgcggccggggggagggatgggga 171
             |||||||||||||||||| |||||
Sbjct: 88780 cgcggccggggggagggaggggga 88757
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>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1249E06
          Length = 126534

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 112737 ttcctcctcgcgccgccgcc 112756
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     gcaccgagaccttcgtcacc 260
               ||||||||||||||||||||
Sbjct: 7757179 gcaccgagaccttcgtcacc 7757160
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>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528B02
          Length = 144495

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 34770 ttcctcctcgcgccgccgcc 34751
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>dbj|AP005924.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0011J03
          Length = 176461

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 139931 ttcctcctcgcgccgccgcc 139912



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 101397 ttcctcctcgcgccgccgcc 101378



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 54221 ttcctcctcgcgccgccgcc 54202
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>dbj|AK122148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138H13, full
           insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 268 tcggcaaggccttccacgtctaca 291
           |||||||||| |||||||||||||
Sbjct: 477 tcggcaaggcgttccacgtctaca 500
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>dbj|AK110780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B12, full
           insert sequence
          Length = 508

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  ttcctcctcgcgccgccgcc 74
           ||||||||||||||||||||
Sbjct: 307 ttcctcctcgcgccgccgcc 288
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>dbj|AK073826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067F03, full
           insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 268 tcggcaaggccttccacgtctaca 291
           |||||||||| |||||||||||||
Sbjct: 477 tcggcaaggcgttccacgtctaca 500
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 5803917 ttcctcctcgcgccgccgcc 5803936
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 23616097 ttcctcctcgcgccgccgcc 23616078



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 17843255 ttcctcctcgcgccgccgcc 17843274



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 14314803 ttcctcctcgcgccgccgcc 14314822



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 11015189 ttcctcctcgcgccgccgcc 11015170



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       ttcctcctcgcgccgccgcc 74
                ||||||||||||||||||||
Sbjct: 10260910 ttcctcctcgcgccgccgcc 10260891



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ttcctcctcgcgccgccgcc 74
               ||||||||||||||||||||
Sbjct: 8213992 ttcctcctcgcgccgccgcc 8214011
to top
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157690

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 18501 ttcctcctcgcgccgccgcc 18520
to top
>emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa0095H15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 142670

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 128784 ttcctcctcgcgccgccgcc 128765
to top
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 23947 ttcctcctcgcgccgccgcc 23928
to top
>emb|AL731612.3|OSJN00254 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070D17,
              complete sequence
          Length = 163376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 135183 ttcctcctcgcgccgccgcc 135202



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 129993 ttcctcctcgcgccgccgcc 130012
to top
>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09,
             complete sequence
          Length = 141580

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 82260 ttcctcctcgcgccgccgcc 82279
to top
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134082

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 90085 ttcctcctcgcgccgccgcc 90104
to top
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 67712 ttcctcctcgcgccgccgcc 67731
to top
>emb|AL732645.4|CNS08C9K Oryza sativa chromosome 12, . BAC OSJNBb0090H23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134370

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 67725 ttcctcctcgcgccgccgcc 67744
to top
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 81620 ttcctcctcgcgccgccgcc 81601
to top
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     ttcctcctcgcgccgccgcc 74
              ||||||||||||||||||||
Sbjct: 136134 ttcctcctcgcgccgccgcc 136153
to top
>emb|AL731750.3|CNS08C7Z Oryza sativa chromosome 12, . BAC OJ1055_H05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113332

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctcgcgccgccgcc 74
             ||||||||||||||||||||
Sbjct: 90156 ttcctcctcgcgccgccgcc 90175
to top
>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
             sequence
          Length = 227692

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   ccgccgcggccggggggagg 163
             ||||||||||||||||||||
Sbjct: 71587 ccgccgcggccggggggagg 71568


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,955,192
Number of Sequences: 3902068
Number of extensions: 2955192
Number of successful extensions: 61927
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60275
Number of HSP's gapped (non-prelim): 1652
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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