ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CN032_MOUSE (Q8BH93) Protein C14orf32 homolog 32 0.91
2UL14_HHV11 (P04291) Hypothetical UL14 protein 29 7.7
3SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-rel... 29 7.7

>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog|
          Length = 242

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 202 PSPSPWEAPASDPEMASGLADSSDDPS 122
           P  SPW  P++ P M SGL  SS  PS
Sbjct: 35  PGSSPWSNPSAPPAMPSGLPPSSAAPS 61



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>UL14_HHV11 (P04291) Hypothetical UL14 protein|
          Length = 219

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 PSPSPWEAPASDPEMASGLADSSDD 128
           PSP+P   PA+DP  ASG A    D
Sbjct: 193 PSPAPPTGPATDPASASGFARDYPD 217



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>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
 Frame = -1

Query: 316 EETASCGLDVTSSTRLS---------LEGNMLADTVSTNSLCVVPRVPSPSPWEAPASDP 164
           EE    G+D +S+T  +         LEG    D +S+++    P    P+P   PAS P
Sbjct: 383 EEDEEAGVDSSSTTSSASPMPNSYDALEGGSYPDMLSSSASSPAP---DPAPEPDPASAP 439

Query: 163 EMASGLADSSDDPSR 119
             AS  A     PS+
Sbjct: 440 APASAPAPVVPQPSK 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,036,725
Number of Sequences: 219361
Number of extensions: 1134709
Number of successful extensions: 3832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3819
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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