>ILVC_RHOBA (Q7UKY0) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 334

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -2

Query: 379 PGFLVR-----GGGLSPLVAVGEGGDERREDSSAPEDEGSGGVSSPAISDIF 239
           PG LVR     GGG+  L+A+GEG  E  +       +G GG     I   F
Sbjct: 134 PGHLVRSEYEKGGGVPALIALGEGASETTKQIGLAYAKGIGGTRGGVIETTF 185

>EUTA_SALTY (Q9ZFV2) Ethanolamine utilization protein eutA|
          Length = 467

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 206 PADPLPQFRRLEN-VGDCRRRDPAAAFVFRRRGVLSPLVPSLAHRHQR 346
           PAD  P+   L   VG+C R  PA  F F   G   PL+ +  H H R
Sbjct: 251 PADITPEVITLSGGVGECYRNQPADPFCFSDIG---PLLATALHEHPR 295

>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)|
           (216.5 kDa protein) (ORF1)
          Length = 1885

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
 Frame = -2

Query: 424 RKERRTEAVRTRRFVPGFLVRGGG------LSPLVAVGEG--GDERREDSSAPEDEGSGG 269
           R+++R E  +  R +P  L+  G       L    + G+G   +ERR+   A  D G  G
Sbjct: 582 RRQKRKEKAKKTRMIPVHLLELGSDQKEKNLGQEASKGKGIEQEERRKSDEAKFDSGPSG 641

Query: 268 VSSPAISDIFESPELGKGVSWLALPTMVSRNML 170
           V S    +  ++  + + V  L L  ++ +  +
Sbjct: 642 VCSIKAENPVDAQHIAEPVPCLKLNDLIGKEKI 674

>PCDH7_HUMAN (O60245) Protocadherin-7 precursor (Brain-heart protocadherin)|
           (BH-Pcdh)
          Length = 1069

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 361 GGGLSPLVAVGEGGDERREDSSAPEDEGSGGVSSPAISDIFE 236
           GGG +     G GG +RR D+S    EG GG +    S +FE
Sbjct: 208 GGGGNGASGGGSGGSKRRLDAS----EGGGGTNPGGRSSVFE 245

>DNAE2_CORJK (Q4JTH1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1153

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 364 RGGGLSPLVAVGEGGDERREDSSAP-EDEGSG--GVSSPAISDIF 239
           RG GL  L AVG G  +RR  S  P E EG+G  G S   I+  F
Sbjct: 52  RGAGLRNLRAVGVGEGQRRTTSLDPAEAEGTGAEGASQKGITTPF 96

>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 148 ALRPYSPRNPKALISHKVPAESYKQHP--PIPGQHRLWLRLG 29
           A+RP  P +P  + S + P  + +Q P  P P  H +W RLG
Sbjct: 69  AVRPSRPEDP-GVPSTQTPRPTERQGPNDPQPAPHSVWSRLG 109

>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
 Frame = -2

Query: 361  GGGLSPLVAVGEGGDERR----------EDSSAPEDEGSGGVSSPAI 251
            GGG       G+GG+E +          +DS+  E+E  GG SSPA+
Sbjct: 1237 GGGCGVGGGGGDGGEEAQTQIGAKGSSSQDSAMEEEEQGGGSSSPAL 1283

>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 148 ALRPYSPRNPKALISHKVPAESYKQHP--PIPGQHRLWLRLG 29
           A+RP  P +P  + S + P  + +Q P  P P  H +W RLG
Sbjct: 69  AVRPSRPEDP-GVPSTQTPRPTERQGPNDPQPAPHSVWSRLG 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,028,591
Number of Sequences: 219361
Number of extensions: 1169409
Number of successful extensions: 3321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3318
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)