Clone Information

BLAST Search Result

Clone Name	bastl54h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	34	0.10
2	ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arab...	33	0.13
3	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	33	0.23
4	SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Tra...	32	0.38
5	ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related pro...	32	0.50
6	YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4	31	0.66
7	SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)	31	0.66
8	SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Tra...	31	0.66
9	SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratc...	31	0.86
10	SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratc...	31	0.86
11	VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6...	31	0.86
12	VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6...	31	0.86
13	SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains pro...	31	0.86
14	FBRL_GIALA (Q24957) Fibrillarin	30	1.1
15	HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)	30	1.1
16	MYOB_DICDI (P34092) Myosin IB heavy chain	30	1.5
17	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	30	1.5
18	CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21)...	30	1.5
19	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	29	2.5
20	CI066_HUMAN (Q5T8R8) Protein C9orf66	29	3.3
21	TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (D...	29	3.3
22	US02_EHV1B (P28964) Gene 68 protein	29	3.3
23	RP54_XANCV (P77998) RNA polymerase sigma-54 factor	29	3.3
24	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	3.3
25	SOX12_MOUSE (Q04890) SOX-12 protein	29	3.3
26	MYSC_ACACA (P10569) Myosin IC heavy chain	28	4.3
27	APS1_SCHPO (Q09790) Diphosphoinositol polyphosphate phosphohydro...	28	4.3
28	UL34_EBV (P03185) Protein BFRF1	28	4.3
29	MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (M...	28	4.3
30	TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	28	4.3
31	WA22_MYCTU (P0A686) WAG22 antigen precursor	28	5.6
32	WA22_MYCBO (P0A687) WAG22 antigen precursor	28	5.6
33	CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor	28	5.6
34	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	28	5.6
35	IF2_COREF (Q8FPA7) Translation initiation factor IF-2	28	5.6
36	RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated...	28	5.6
37	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	5.6
38	DBP2_YARLI (Q6C4D4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)	28	5.6
39	IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2	28	7.3
40	SGOL2_HUMAN (Q562F6) Shugoshin-like 2 (Tripin)	28	7.3
41	SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7...	28	7.3
42	YQFQ_BACSU (P54474) Hypothetical protein yqfQ	28	7.3
43	IF2_MYCTU (P65131) Translation initiation factor IF-2	28	7.3
44	IF2_MYCBO (P65132) Translation initiation factor IF-2	28	7.3
45	PIWI_BRARE (Q8UVX0) Piwi-like protein 1	28	7.3
46	ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferas...	28	7.3
47	VTNC_HUMAN (P04004) Vitronectin precursor (Serum spreading facto...	27	9.5
48	VGLD_PRVRI (P07645) Protein gp50	27	9.5
49	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	27	9.5
50	M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotei...	27	9.5
51	HTRB_ECOLI (P0ACV0) Lipid A biosynthesis lauroyl acyltransferase...	27	9.5
52	HTRB_ECO57 (P0ACV1) Lipid A biosynthesis lauroyl acyltransferase...	27	9.5
53	AREA_EMENI (P17429) Nitrogen regulatory protein areA	27	9.5
54	TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.4...	27	9.5
55	SNPA_STRCS (P56406) Extracellular small neutral protease (EC 3.4...	27	9.5
56	PLD2_HUMAN (O14939) Phospholipase D2 (EC 3.1.4.4) (PLD 2) (Choli...	27	9.5
57	COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Coll...	27	9.5
58	FA98A_RAT (Q5FWT1) Protein FAM98A	27	9.5
59	FA98A_MOUSE (Q3TJZ6) Protein FAM98A	27	9.5
60	Y112_ADE02 (P03289) Hypothetical protein F-112	27	9.5

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -2

Query: 287 GEAAERPVMRQNMVAAAVDLG------FPAPGGASPRPNPRESGRRRPDWATGEGGWIGR 126
           G+ A RP        AA   G       P+PG   PRPNP    +R P      GG  GR
Sbjct: 217 GQGAPRPGATPGPRPAAAQGGPRPGGPRPSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGR 276

Query: 125 --GASGSNWDRGG 93
             GA G+    GG
Sbjct: 277 PGGAPGAGRPGGG 289

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>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -2

Query: 227 GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG*EAHERRKKQHAFLF 48
           G P+PGG S  P     G   P    G GG   +G  G    + G    E+     A   
Sbjct: 404 GSPSPGGGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGGG---KSGKSGEEKSSSNLALPL 460

Query: 47  GLSL-GLIWFGDGG 9
           G+SL  L+  G GG
Sbjct: 461 GISLPTLLSLGAGG 474

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>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 221 PAPGGASPRPNPRESGRRRPDWATGEGGWIGRGA-SGSNWDRGG*EAHERRKKQHAF 54
           PAPGG+ P    +   R   D   G  G   +G  +G++W   G +   ++  QHAF
Sbjct: 316 PAPGGSRPGKGKKGGERSWDDNKKGGRGLKTKGGDAGNDWKSRGGKGRNKQNNQHAF 372

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>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1162

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 152 TGEGGWIGRGASGSNWDRGG*EAHER 75
           +G GG  GRG SG+ W R G   HE+
Sbjct: 11  SGAGGPAGRGLSGARWGRSGSAGHEK 36

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>ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related protein 71)|
          Length = 335

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
 Frame = -2

Query: 221 PAPGGASPRP----------NPRESGRRRPDWATGEGGW------IGRGASGSN-WDRG- 96
           PAP G SP P          NP  S    P W+     W         G SG+  WD G 
Sbjct: 105 PAPPGTSPSPFVGFEGATGQNPATSAGGVPSWSHPPAAWSTTSWDCSVGPSGATYWDNGL 164

Query: 95  G*EAHERRK 69
           G EAHE  K
Sbjct: 165 GGEAHEDYK 173

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>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 287 GEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESG 174
           G +A  P    N ++ +   G PAPG ++  PNP  +G
Sbjct: 31  GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAG 68

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>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)|
          Length = 315

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -2

Query: 266 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 90
           +++Q    A  D G P PG     P P E G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 89  EAHERRK 69
             HERRK
Sbjct: 53  --HERRK 57

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>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1098

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 149 GEGGWIGRGASGSNWDRGG*EAHER 75
           G GG  GRG  GS W R G   HE+
Sbjct: 5   GSGGSAGRGFGGSRWGRSGSGGHEK 29

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>SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (mScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 251 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 111
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAASGSAPPPTP------RPELATAAGGYINGDAAVS 109

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>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 251 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 111
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAAAGSAPPPTP------RPELATAAGGYINGDAAVS 109

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>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 288
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

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>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 288
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

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>SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein 3 (Shank3)|
           (Proline-rich synapse-associated protein 2) (ProSAP2)
           (Fragment)
          Length = 797

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 242 AAVDLGFPAPGGAS--PRPNPRESGRRRP--DWATGEGGWIGRGASGSNWDRGG*EAHER 75
           AA+ +G P PGG S    P+P   G R    D+  G+G  +  G  G   DR      E 
Sbjct: 33  AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPGLAFGGPGPAKDR----RLEE 88

Query: 74  RKKQHAFL 51
           R++   FL
Sbjct: 89  RRRSTVFL 96

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>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -2

Query: 227 GFPAPGGASPRPNPRESGR-------RRPDWATGEGGWIGRGASGSNWDRGG*EAHERR 72
           G   PGG  P  + R+SGR        RPD+  G+GG  G G    +   GG +  +RR
Sbjct: 12  GRDGPGGRGPGNDRRDSGRSFGDRRPERPDFKRGDGG-RGFGDRRGSGPPGGPDRGDRR 69

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>HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 336

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 254 NMVAAAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGE 144
           N +AA  ++     GG  A+PRP PR++G ++P    G+
Sbjct: 268 NRIAALQEMAQQMAGGTQAAPRPTPRQAGEQQPSGPWGQ 306

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>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 212  GGASPRPNPRESGRRRPDWATGEGGWIGRGA 120
            GGA P P P++ G  RP  A  +GG   +GA
Sbjct: 975  GGARPMPQPQQGGGARPMGAPQQGGAPQQGA 1005

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
 Frame = -2

Query: 200 PRPNPRES------------GRRRPDWATGEGGWIGRGASGSNWDRGG 93
           PRP PR S            G  RP  ++  GG  GRG  G    RGG
Sbjct: 243 PRPGPRPSPMNMPASRPTPPGGARPSTSSRSGGGRGRGGGGGAGPRGG 290



 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 212 GGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDR-GG*EAHERRKKQ 63
           GGA PR      G  R  +    GG  GRG +   + R GG  +  R+ K+
Sbjct: 283 GGAGPRGGGAGGGAPRTGFGGRPGGGRGRGGTAGAFGRPGGRPSRSRKSKK 333

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>CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 435

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 224 FPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG 114
           +P  G   P P  RE   R  +   GEGGW+  G  G
Sbjct: 330 YPIEGRLGPPPWERERAARFTEKRLGEGGWVWIGDDG 366

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 227  GFPA-PGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDR 99
            GFP  PGG  P+ +  E+G +      GE G  G   S  N DR
Sbjct: 1901 GFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDR 1944

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>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -2

Query: 281 AAERPVMRQNMV--AAAVDLGFPAPGGASPRPNPR---ESGR-RRPDWATGEGGWIGRGA 120
           AAE      N+V  +A     FP     SPR   R     GR R P W  G GG  GRG 
Sbjct: 165 AAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGP 224

Query: 119 S 117
           S
Sbjct: 225 S 225

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>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 157 QSGRRRPDSRGFGRGLAPPGAGNPR 231
           + G  R   RG GRG  PPG  NPR
Sbjct: 824 RGGPGRRQGRGRGRGRRPPGKPNPR 848

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>US02_EHV1B (P28964) Gene 68 protein|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 272 RPVMRQNMVAAAVDLG----FPAPGGASPRPNPRESGRRRPDWA 153
           RP   + ++ A VD       PAPG   PR  P E G  RP+ A
Sbjct: 210 RPPTVKRVIYAVVDPARLREIPAPGRPLPRRRPSEGGDARPEAA 253

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>RP54_XANCV (P77998) RNA polymerase sigma-54 factor|
          Length = 479

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -2

Query: 242 AAVDLGFPAPGGASPRPNPRES---GRRRPDWATGEGGWIGRGASGSNWDRGG*EAHER 75
           AA D+   +   AS     RE      R  DW+  E  W G G+ GS  D    +A ER
Sbjct: 56  AASDIAVDSSPSASTEQPQREEVAPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAER 114

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 230 LGFPAPGGASPRP-NPRESGRRRPDWATGEGGWIGR-GASG 114
           +GFP P GA+  P  P E G   P  A G  G  G  GA G
Sbjct: 569 MGFPGPKGAAGEPGKPGERGAPGPPGAVGAAGKDGEAGAQG 609

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>SOX12_MOUSE (Q04890) SOX-12 protein|
          Length = 314

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 266 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 90
           +++Q    A  D G P PG     P P   G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAAEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 89  EAHERRK 69
             HERRK
Sbjct: 53  --HERRK 57

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -2

Query: 227  GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 111
            G PAPGGA+PR      GR  P    G GG  G G  G+
Sbjct: 1099 GMPAPGGAAPR------GRGAP--PPGAGGPPGGGRGGA 1129

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>APS1_SCHPO (Q09790) Diphosphoinositol polyphosphate phosphohydrolase aps1 (EC|
           3.6.1.52) (Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase) (EC 3.6.1.-) (Ap6A hydrolase)
          Length = 210

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = -2

Query: 179 SGRRRPDWATGEGGW-----IGRGASGSNWDRGG*EAHERR 72
           S ++ P W   +GGW     + + A    W+ GG   H  R
Sbjct: 62  SAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHITR 102

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>UL34_EBV (P03185) Protein BFRF1|
          Length = 336

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 233 DLGFPAPGGASPRPNPRESGRRRPDWATGEGGW 135
           D G    GG  PRP    SG        G GGW
Sbjct: 199 DTGARVTGGGGPRPGVTHSGCLGDSHVRGRGGW 231

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>MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (MCH receptor 1)|
           (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein
           coupled receptor 24) (Fragment)
          Length = 388

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = -2

Query: 188 PRESGRR----RPDWATGEGGWIGRGASGSNW 105
           P + GRR    +P W  G   W+   A+G+ W
Sbjct: 4   PGQGGRRWRLPQPAWVEGSSAWLWEPATGTGW 35

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>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -2

Query: 212 GGASPRPNPRESGRRRPDWATGEGGWI---GRGASGSNWDRGG 93
           GG  P P P   G  R     G GGW    G G SG     GG
Sbjct: 771 GGGGPGPGPGGGGSGR---GAGSGGWSSGPGGGGSGGGGGSGG 810

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>WA22_MYCTU (P0A686) WAG22 antigen precursor|
          Length = 914

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -2

Query: 281 AAERPVMRQNMVAAAVDLGFPAPG-GASPRPNPRESGRRRPDWATGEGGWIGRGASGSNW 105
           AA  P++           G P  G GA+  P    +G     W  G GG  G GA G+N 
Sbjct: 93  AAVTPLLNSINAPVLAATGRPLIGNGANGAPGTGANGGDA-GWLIGNGGAGGSGAKGANG 151

Query: 104 DRGG 93
             GG
Sbjct: 152 GAGG 155

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>WA22_MYCBO (P0A687) WAG22 antigen precursor|
          Length = 914

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -2

Query: 281 AAERPVMRQNMVAAAVDLGFPAPG-GASPRPNPRESGRRRPDWATGEGGWIGRGASGSNW 105
           AA  P++           G P  G GA+  P    +G     W  G GG  G GA G+N 
Sbjct: 93  AAVTPLLNSINAPVLAATGRPLIGNGANGAPGTGANGGDA-GWLIGNGGAGGSGAKGANG 151

Query: 104 DRGG 93
             GG
Sbjct: 152 GAGG 155

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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 233  DLGFPAPGGASPRPN-PRESGRRRPDWATGEGGWIG-RGASG 114
            D+G P P GAS  P  P   G+R P    G  G  G +GA G
Sbjct: 1290 DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKG 1331

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
 Frame = -2

Query: 233 DLGFPAPGGASPRPNPR----------ESGRRRPDWATGEGGWIGR-GASGSNWDRG 96
           D G P P G S  P P+            G + P  ATG  G  GR G  GSN + G
Sbjct: 791 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 847

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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -2

Query: 239 AVDLGFPAPGGASPRP--NPRESGRRRPDWATGEG 141
           A D   P PGG  PRP   PR  G  RP      G
Sbjct: 195 AADRPGPRPGGGGPRPGGGPRPGGAPRPQGGQRSG 229



 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 242 AAVDLGFPAPGGASPRPN--PRESGRRRP 162
           AA D   P PGG +PRPN  PR   +  P
Sbjct: 149 AAEDKATPKPGGEAPRPNAMPRPMAKPGP 177

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>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)|
          Length = 290

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 242 AAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWD 102
           AA++ GFPA G   A+P   P          ATGE      GA+  NWD
Sbjct: 232 AAIESGFPATGDWEAAPAGFP----------ATGEWSDAAPGAAAPNWD 270

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
 Frame = -2

Query: 233 DLGFPAPGGASPRPNPR----------ESGRRRPDWATGEGGWIGR-GASGSNWDRG 96
           D G P P G S  P P+            G + P  ATG  G  GR G  GSN + G
Sbjct: 790 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 846

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>DBP2_YARLI (Q6C4D4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 552

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 149 GEGGWIGRGASGSNWDRGG 93
           G GGW GRG  G    RGG
Sbjct: 502 GRGGWGGRGGRGGRGGRGG 520

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>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2|
          Length = 841

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 281 AAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRE-SGRRRPDWATGEGGWIGRGASGSNW 105
           AA  PV     V  A     PAP  A+P  + R+   +RRPD    +     R A G + 
Sbjct: 146 AAAEPVAAAEPVREAAPAAAPAPASAAPSADARKRDEQRRPDKPRAD----DRNARGGDG 201

Query: 104 DR 99
           +R
Sbjct: 202 ER 203

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>SGOL2_HUMAN (Q562F6) Shugoshin-like 2 (Tripin)|
          Length = 1265

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 178 DSRGFGRGLAPPGAGNPRSTAAATMFWRMTGLSAASPVDTILDKENFT 321
           +++  GR    P   N          W    LSA +P  T+LDK++ +
Sbjct: 254 NAQSIGRRWEKPSPSNVTERKKRGSSWESNNLSADTPCATVLDKQHIS 301

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>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)|
          Length = 3218

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 155 ATGEGGWIGRGASGSNWDRGG*EAHE 78
           ATG G   G G S S W  GG ++H+
Sbjct: 56  ATGSGNIAGLGGSESMWSPGGGKSHD 81

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>YQFQ_BACSU (P54474) Hypothetical protein yqfQ|
          Length = 247

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 224 FPAPGGASPRPNPRESGRRRPD 159
           +P PG   P PN R  GRR P+
Sbjct: 11  YPQPGPPRPMPNQRMMGRRPPN 32

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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 221 PAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           P PGGA     P   G  RP    G  G     A G N+  GG
Sbjct: 194 PRPGGAVGGARPPRPGAPRPGGRPGAPGAGRSDAGGGNYRGGG 236

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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 221 PAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           P PGGA     P   G  RP    G  G     A G N+  GG
Sbjct: 194 PRPGGAVGGARPPRPGAPRPGGRPGAPGAGRSDAGGGNYRGGG 236

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>PIWI_BRARE (Q8UVX0) Piwi-like protein 1|
          Length = 858

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 160 SGRRRPDSRGFGRGLAP--PGAGNPRSTAAA 246
           +GR R  SRG GRG  P  PGA  P S  AA
Sbjct: 2   TGRARARSRGRGRGQEPAAPGAQPPVSQEAA 32

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>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 553

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = -2

Query: 284 EAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWI 132
           EAA  P       AAA     PAP  A+P P P  +       A G GG I
Sbjct: 78  EAANEPAAAPAPAAAA-----PAPAAAAPAPAPAPAAAPAAAPAAGGGGTI 123

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>VTNC_HUMAN (P04004) Vitronectin precursor (Serum spreading factor) (S-protein)|
           (V75) [Contains: Vitronectin V65 subunit; Vitronectin
           V10 subunit; Somatomedin B]
          Length = 478

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 287 GEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRP 162
           G   + PV++    A A ++G   P G   RP     GR +P
Sbjct: 108 GNPEQTPVLKPEEEAPAPEVGASKPEGIDSRPETLHPGRPQP 149

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>VGLD_PRVRI (P07645) Protein gp50|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 239 AVDLGFPAPGGASPRPNPRESGRRRPD 159
           A+D   P+ G   PRP PR   R +P+
Sbjct: 256 AIDPARPSAGSPRPRPRPRPRPRPKPE 282

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 221 PAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           PAP  + P+P     G  +P  A   G    RG  G     GG
Sbjct: 157 PAPAPSGPKPGGARPGAPKPGGARPSGPGQDRGQQGGQGRPGG 199

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>M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotein precursor|
           (MSP130)
          Length = 779

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 188 PRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           P + G+  P +  G+GG  G+G  G  W +GG
Sbjct: 312 PGQGGQGGPGYYPGQGGQGGQGGQG-GWGQGG 342

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>HTRB_ECOLI (P0ACV0) Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)|
           (Heat shock protein B)
          Length = 306

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 166 RRRPDSRGFGRGLAPPGAGNPRSTAAATMFW 258
           RR+PD +G+   + PP    P   A  T  W
Sbjct: 242 RRKPDGKGYQLIMLPPECSPPLDDAETTAAW 272

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>HTRB_ECO57 (P0ACV1) Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)|
           (Heat shock protein B)
          Length = 306

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 166 RRRPDSRGFGRGLAPPGAGNPRSTAAATMFW 258
           RR+PD +G+   + PP    P   A  T  W
Sbjct: 242 RRKPDGKGYQLIMLPPECSPPLDDAETTAAW 272

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>AREA_EMENI (P17429) Nitrogen regulatory protein areA|
          Length = 876

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 154 AQSGRRRPDSRGFGRGLAPPGAGNPRSTAAAT 249
           ++S    P S G G G+ P  A  P+S++AAT
Sbjct: 764 SESPPAMPGSSGRGSGVVPIAAAPPKSSSAAT 795

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>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (HEST2) (Telomerase-associated
           protein 2) (TP2)
          Length = 1132

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -2

Query: 242 AAVDLGFPAP-----GGASPR-----PNPRESGRRRPD-WATGEGGWIGRGASGSNWDRG 96
           A V LG PAP     GG++ R       PR      P+    G+G W   G +    DRG
Sbjct: 210 AGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRG 269

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>SNPA_STRCS (P56406) Extracellular small neutral protease (EC 3.4.24.77)|
           (Snapalysin) (SCNP)
          Length = 132

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -2

Query: 290 TGEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATG 147
           TG     P   Q   +  +  G P P   +P PN +E  R    WA G
Sbjct: 85  TGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALWANG 132

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>PLD2_HUMAN (O14939) Phospholipase D2 (EC 3.1.4.4) (PLD 2) (Choline phosphatase|
           2) (Phosphatidylcholine-hydrolyzing phospholipase D2)
           (PLD1C) (hPLD2)
          Length = 933

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 233 DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGAS 117
           DLG  +   AS  P PR      PD +  +  W+G+  S
Sbjct: 474 DLGDSSESAASQPPTPRPDSPATPDLSHNQFFWLGKDYS 512

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>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)|
            chain)
          Length = 1142

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -2

Query: 233  DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIG----RGASGSNWDRG 96
            D+GFP P G S +P     G    D   G  G +G    RG  G   D+G
Sbjct: 912  DIGFPGPEGPSGKP-----GINGKDGIPGAQGIMGKPGDRGPKGERGDQG 956

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>FA98A_RAT (Q5FWT1) Protein FAM98A|
          Length = 515

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 212 GGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           GG   + N  + G    +  +G GG  GRG  G    +GG
Sbjct: 436 GGGYQQDNRYQDGGHHGERGSGRGGRGGRGGRGGRGSQGG 475

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>FA98A_MOUSE (Q3TJZ6) Protein FAM98A|
          Length = 515

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 212 GGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG 93
           GG   + N  + G    +  +G GG  GRG  G    +GG
Sbjct: 436 GGGYQQDNRYQDGGHHGERGSGRGGRGGRGGRGGRGSQGG 475

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>Y112_ADE02 (P03289) Hypothetical protein F-112|
          Length = 112

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 166 RRRPDSRGFGRGLAPPGAGNPRSTAA 243
           RR P +RG  RG  PPG    R T A
Sbjct: 63  RRAPAARGLYRGRRPPGRDAARPTTA 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,223,084
Number of Sequences: 219361
Number of extensions: 813813
Number of successful extensions: 3637
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 3264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result