Clone Name | bastl54g12 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MBRL_HUMAN (Q4ZIN3) Membralin | 32 | 0.70 | 2 | TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase ... | 31 | 1.2 | 3 | TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K ... | 30 | 3.5 | 4 | TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li... | 29 | 4.5 | 5 | ETP1_SCHPO (Q10361) Electron transfer protein 1, mitochondrial p... | 29 | 4.5 |
---|
>MBRL_HUMAN (Q4ZIN3) Membralin| Length = 620 Score = 32.0 bits (71), Expect = 0.70 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%) Frame = -2 Query: 342 FFHDFH-PSPLDDMKRGPLLKTVLPLDAGTATALPRWT*RSNAPPGAGADDIXXXXXXXX 166 FFH + P+ L ++ +L PL GT TALP ++ P D Sbjct: 445 FFHHYELPAILQQVRIQEMLLQAPPLGPGTPTALPDDMNNNSGAPATAPDSAGQPPALGP 504 Query: 165 PQIGRIRGPD---SSPPCATAAAISAPLDPGANLLRVAQTA 52 G P ++P AAA S G +L +A+TA Sbjct: 505 VSPGASGSPGPVAAAPSSLVAAAASVAAAAGGDLGWMAETA 545
>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 815 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = +1 Query: 1 KPQPKP*PTRAPLSLRLRCLCHAQQIGARIQWRAYCCCCSAGRRG 135 +P+P+P P R S R G R W C CCS G RG Sbjct: 25 EPEPEPEPDRRSRSRRG---------GGRSFWARCCGCCSCGNRG 60
>TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 824 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 1 KPQPKP*PTRAPLSLRLRCLCHAQQIGARIQWRAYCCCCSAGRR 132 +P+P+P P R+ S R G R W C CCS G R Sbjct: 24 EPEPEPEPDRSSRSRRG---------GGRSFWARCCGCCSCGNR 58
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +2 Query: 74 RLAP-GSNGALIAAAVAQGGEESGPRMRPIXXXXXXXXXXMSSAPAPGGAFDRYVQR 241 RL P + G A Q EES PR+ + + AP GAFD ++ R Sbjct: 3677 RLGPLSAEGTTGLAPAGQTSEESRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLR 3733
>ETP1_SCHPO (Q10361) Electron transfer protein 1, mitochondrial precursor| Length = 631 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 438 PRVALTSPLLWGKVLRSLLKXTNDARVRMNQRFFHDFHPSPLDDMKR 298 P AL + W K++ S K + + + QR FH F PS ++K+ Sbjct: 466 PEYALKNIRSWTKLISSPPKSSISSSILTQQRQFHTFRPSFHSEIKK 512 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,252,275 Number of Sequences: 219361 Number of extensions: 994465 Number of successful extensions: 3146 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3028 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3143 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)