ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MBRL_HUMAN (Q4ZIN3) Membralin 32 0.70
2TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase ... 31 1.2
3TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K ... 30 3.5
4TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li... 29 4.5
5ETP1_SCHPO (Q10361) Electron transfer protein 1, mitochondrial p... 29 4.5

>MBRL_HUMAN (Q4ZIN3) Membralin|
          Length = 620

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
 Frame = -2

Query: 342 FFHDFH-PSPLDDMKRGPLLKTVLPLDAGTATALPRWT*RSNAPPGAGADDIXXXXXXXX 166
           FFH +  P+ L  ++   +L    PL  GT TALP     ++  P    D          
Sbjct: 445 FFHHYELPAILQQVRIQEMLLQAPPLGPGTPTALPDDMNNNSGAPATAPDSAGQPPALGP 504

Query: 165 PQIGRIRGPD---SSPPCATAAAISAPLDPGANLLRVAQTA 52
              G    P    ++P    AAA S     G +L  +A+TA
Sbjct: 505 VSPGASGSPGPVAAAPSSLVAAAASVAAAAGGDLGWMAETA 545



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>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 815

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 1   KPQPKP*PTRAPLSLRLRCLCHAQQIGARIQWRAYCCCCSAGRRG 135
           +P+P+P P R   S R          G R  W   C CCS G RG
Sbjct: 25  EPEPEPEPDRRSRSRRG---------GGRSFWARCCGCCSCGNRG 60



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>TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 824

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 1   KPQPKP*PTRAPLSLRLRCLCHAQQIGARIQWRAYCCCCSAGRR 132
           +P+P+P P R+  S R          G R  W   C CCS G R
Sbjct: 24  EPEPEPEPDRSSRSRRG---------GGRSFWARCCGCCSCGNR 58



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>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 74   RLAP-GSNGALIAAAVAQGGEESGPRMRPIXXXXXXXXXXMSSAPAPGGAFDRYVQR 241
            RL P  + G    A   Q  EES PR+  +            +  AP GAFD ++ R
Sbjct: 3677 RLGPLSAEGTTGLAPAGQTSEESRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLR 3733



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>ETP1_SCHPO (Q10361) Electron transfer protein 1, mitochondrial precursor|
          Length = 631

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 438 PRVALTSPLLWGKVLRSLLKXTNDARVRMNQRFFHDFHPSPLDDMKR 298
           P  AL +   W K++ S  K +  + +   QR FH F PS   ++K+
Sbjct: 466 PEYALKNIRSWTKLISSPPKSSISSSILTQQRQFHTFRPSFHSEIKK 512


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,252,275
Number of Sequences: 219361
Number of extensions: 994465
Number of successful extensions: 3146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3143
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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