ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54g11 |
|---|---|
| Clone Library Name | barley_pub |
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 32.7 bits (73), Expect = 0.21 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -3 Query: 162 QGDGCG-----REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMD 16 +G GCG + GEEA + + GS +S + A EE E +SSP P + Sbjct: 1236 EGGGCGVGGGGGDGGEEAQTQIGAKGS---SSQDSAMEEEEQGGGSSSPALPAE 1286
>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 929 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 289 CWHQRS*LEAH-HHPPRCGCCLQSSVSQYCARR 384 CWH R ++AH HP CG C+ + ARR Sbjct: 895 CWHYRDDVDAHPEHPGLCGRCVSNLFGDGEARR 927
>SYI_XYLFA (Q9PAS7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +1 Query: 250 FLIQFLPTLRSP--NCWHQRS*LEAH-HHPPRCGCCL 351 F + PT ++ CWH R+ + AH HP CG C+ Sbjct: 894 FFVSAQPTTKAKCARCWHYRADIGAHPTHPELCGRCV 930
>HTPG_BRAJA (Q89CK8) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 625 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -2 Query: 193 RVLKERRRAGPGR-WMWTRSGGRGGSQLEQQRQQCAHISRG 74 +++ RRAG W WT SGG G + A ++RG Sbjct: 139 KIIVVSRRAGESDVWSWTSSGGSGFEIARASEEDAARVTRG 179
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -3 Query: 144 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4 RE E A SSS R S G MR + P T + A PP Sbjct: 1198 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1244
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -3 Query: 144 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4 RE E A SSS R S G MR + P T + A PP Sbjct: 1190 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1236
>NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor,| erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine zipper protein NF-E2) Length = 373 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -2 Query: 184 KERRRAGPGRWMWTRSGGRGGSQLEQQRQQCAHISRGCKRGRRDESGCLLSPHTY 20 +E R R R+ G LE RQQ + R + RDESG SP Y Sbjct: 296 RELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRDESGNSYSPEEY 350
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = -3 Query: 144 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4 REA E AA SSS R S G MR + P T + A PP Sbjct: 1192 REA-ERAAQKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1237
>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ| protein-like 5) (RecQ5) Length = 991 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = -3 Query: 171 EQDQG-DGCG------REAGEEAAVSLSSSGSNARTSHEDAK 67 E D+G GCG REA E+ A+ LS G NA+ H K Sbjct: 253 EADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLK 294
>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog| (Xeroderma pigmentosum group C-complementing protein homolog) (p125) Length = 930 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%) Frame = -2 Query: 184 KERRRAGPGRWMWTRSGGRGGSQLEQQRQ-------QCAHISRGCKRGRRDESG 44 K++R + P R T++G + S+ ++ Q + + S GCKRG++ SG Sbjct: 459 KQKRASAPQR---TKAGSKSASKTQRGSQCEPSSFPEASSSSSGCKRGKKVSSG 509
>SYI_XYLFT (Q87BL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Frame = +1 Query: 289 CWHQRS*LEAH-HHPPRCGCCL 351 CWH R+ + AH HP CG C+ Sbjct: 909 CWHYRADIGAHPTHPELCGRCI 930
>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1139 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -3 Query: 153 GCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPL---TPMDAAP 7 G G ++ S SSSGSN+R + A + G R+ + PL +P A+P Sbjct: 56 GGGSSGSSSSSNSSSSSGSNSRGNGGAATDPGVQRSFSQVPLPTFSPSTASP 107
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Frame = -3 Query: 156 DGCGREAGEEAAVSLSSSGSNARTSHEDAKEE-----GEMRAAASSPLTPMDAAPP 4 DG G A A + S + S DA + E R+ A+ P+TP AAPP Sbjct: 747 DGAGGPAFSFQAAPRAPSPAPRPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPP 802
>ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10| Length = 173 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/84 (19%), Positives = 27/84 (32%) Frame = -3 Query: 255 QEAASXXXXXXXXXXXXXXXXXXXXXXGEQDQGDGCGREAGEEAAVSLSSSGSNARTSHE 76 + S E DG + +A S SSS S++ +S Sbjct: 84 KSVTSTSSSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSSSSSSSS 143 Query: 75 DAKEEGEMRAAASSPLTPMDAAPP 4 + +++SS + D PP Sbjct: 144 SDSDSSSSSSSSSSSESSSDDEPP 167
>SKI_HUMAN (P12755) Ski oncogene (C-ski)| Length = 728 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = -3 Query: 141 EAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAP 7 E+ EE SLSS S + TS AK+ G A A P AAP Sbjct: 487 ESREEFTSSLSSLSSPSFTSSSSAKDLGSPGARALPSAVPDAAAP 531
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -3 Query: 84 SHEDAKEEGEMRAAASSPLTPMDAAPP 4 S + +E GE+R ++PL+P APP Sbjct: 418 SRQQEEEAGELRPPPAAPLSPPPPAPP 444
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = -3 Query: 156 DGCGREAGE-EAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4 DG G A +AA S S + + E R+ A+ P+TP AAPP Sbjct: 833 DGAGGSAFSFQAAPRAPSPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPP 884
>SYI1_BURPS (Q63WI3) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA| ligase 1) (IleRS 1) Length = 945 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = +1 Query: 289 CWHQRS*LEAH-HHPPRCGCCLQS 357 CWH R + AH HP CG C + Sbjct: 911 CWHYREDVGAHADHPTLCGRCFSN 934
>SYI1_BURMA (Q62HL4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA| ligase 1) (IleRS 1) Length = 945 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = +1 Query: 289 CWHQRS*LEAH-HHPPRCGCCLQS 357 CWH R + AH HP CG C + Sbjct: 911 CWHYREDVGAHADHPTLCGRCFSN 934
>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4| (KAISO-like zinc finger protein 1) (KAISO-L1) Length = 1013 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -3 Query: 159 GDGCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4 G A AA S SSS S++ +S A +++ P +P ++PP Sbjct: 72 GGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPP 123
>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)| Length = 816 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 165 PARRRSFKTLHHLASVVAAVLPPGLVMPLLDP 260 PA RS +L S A+VLPPGL + + P Sbjct: 625 PASGRSLSSLPSQFSSTASVLPPGLSLTTIAP 656
>PHO87_YEAST (P25360) Inorganic phosphate transporter PHO87| Length = 923 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 201 LASVVAAVLPPGLVMPLLDPVSTYSPVTKLL 293 +++V + VL L+ PLLDP+ SP K L Sbjct: 599 ISNVASPVLTYSLLTPLLDPLDYTSPFAKAL 629
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -3 Query: 168 QDQGDGCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEM-RAAASSPLTPMD 16 Q QG+G G GEE S S RT E E R++++ TP D Sbjct: 258 QRQGEGEGEGEGEETNYRRQRSRSKGRTETERGGERRRRGRSSSADSTTPTD 309
>DNB2_ADE04 (P06500) Early E2A DNA-binding protein| Length = 512 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 133 GRGGSQLEQQRQQCAHISRGCKR---GRRDES--GCLLSPHTYGR 14 GRGGSQLE++R++ RG GR S L HTY R Sbjct: 3 GRGGSQLERRRERTPDRGRGSASHPPGRESPSPPPLPLKRHTYRR 47
>TATB_XANAC (Q8PEX3) Sec-independent protein translocase protein tatB homolog| Length = 208 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -3 Query: 144 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAA 10 REA ++ AR H+D + ++RA+A+ TP++ A Sbjct: 71 REAEDQLRNKQQQVEQGARALHDDVSRDIDIRASATPVATPLELA 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,296,290 Number of Sequences: 219361 Number of extensions: 870337 Number of successful extensions: 3422 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3411 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
