Clone Information

BLAST Search Result

Clone Name	bastl54g09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CINA_CLOPE (Q8XP33) CinA-like protein	37	0.034
2	Y1239_AQUAE (O67284) Hypothetical protein aq_1239	35	0.13
3	CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)	35	0.13
4	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	33	0.38
5	SPD5_CAEEL (P91349) Spindle-defective protein 5	32	1.1
6	CINA_PROMA (Q7VDS9) CinA-like protein	31	1.9
7	DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contai...	31	1.9
8	FGF8_MOUSE (P37237) Fibroblast growth factor 8 precursor (FGF-8)...	31	1.9
9	PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein...	31	1.9
10	LIPS_HUMAN (Q05469) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)	30	2.5
11	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	30	3.2
12	PBPA_STRR6 (Q8DR59) Penicillin-binding protein 1A (PBP-1A) (Expo...	30	3.2
13	PBPA_STRPN (Q04707) Penicillin-binding protein 1A (PBP-1A)	30	3.2
14	HSP82_ASHGO (Q8J2M3) Heat shock protein HSP82	30	4.2
15	SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein poste...	30	4.2
16	SYN3_RAT (O70441) Synapsin-3 (Synapsin III)	30	4.2
17	SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)	30	4.2
18	EX7S_ERWCT (Q6D842) Probable exodeoxyribonuclease VII small subu...	30	4.2
19	MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)	29	5.5
20	HIS5_RHORT (Q2RNA5) Imidazole glycerol phosphate synthase subuni...	29	5.5
21	CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox prote...	29	5.5
22	BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dep...	29	5.5
23	TRPE_ACICA (P23315) Anthranilate synthase component 1 (EC 4.1.3....	29	5.5
24	PHEA_AQUAE (O67085) P-protein [Includes: Chorismate mutase (EC 5...	29	5.5
25	P5CS_MOUSE (Q9Z110) Delta 1-pyrroline-5-carboxylate synthetase (...	29	5.5
26	RPOB_EMIHU (Q4G3A7) DNA-directed RNA polymerase beta chain (EC 2...	29	7.2
27	PREA_BACTU (P10025) Plasmid recombination enzyme (Mobilization p...	29	7.2
28	ECM27_YEAST (P47144) Extracellular matrix protein 27	29	7.2
29	MATK_CICAR (Q5YK05) Maturase K (Intron maturase)	29	7.2
30	YRP4_SHVX (Q04583) Hypothetical 42.2 kDa protein in replicase ge...	29	7.2
31	CYK3_YEAST (Q07533) Cytokinesis protein 3	29	7.2
32	SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)	29	7.2
33	CDC54_YEAST (P30665) Cell division control protein 54	29	7.2
34	VE2_HPV35 (P27222) Regulatory protein E2	28	9.4
35	MATK_CARAB (Q9TKP0) Maturase K (Intron maturase)	28	9.4
36	MAM_DROME (P21519) Neurogenic protein mastermind	28	9.4
37	HSP82_YEAST (P02829) ATP-dependent molecular chaperone HSP82 (He...	28	9.4
38	POL2_TRSV (Q6UR06) RNA2 polyprotein (P2) [Contains: P2A protein ...	28	9.4
39	ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Aggl...	28	9.4
40	VGF_BPPHK (Q38041) Capsid protein (F protein) (GPF)	28	9.4

>CINA_CLOPE (Q8XP33) CinA-like protein|
          Length = 412

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 279 DYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIP 431
           DY +K +L+M     K    P  A ++PN N +APG   +G N  +  ++P
Sbjct: 101 DYFKKNNLEMTENNKKQCYFPKEAIILPNPNGTAPGAILEGENNKRIILLP 151

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>Y1239_AQUAE (O67284) Hypothetical protein aq_1239|
          Length = 111

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
 Frame = +3

Query: 162 IMETLKKHLPVSVPEGL-----NELQEIA----VRFEEKIYTAATNQSDYLRKISLKMLS 314
           +METL+K     +P+GL     + L++I+     R E+ + T     S+ L+KI+L  L 
Sbjct: 14  LMETLEKKKVEKIPQGLQPFDFDSLEKISSERYPRLEQFLSTFTERLSEELKKITLSNLK 73

Query: 315 METKTQQAPGNAQVIPN 365
           ++ K +     ++++PN
Sbjct: 74  VKVKEKDVKPLSKILPN 90

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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
 Frame = +3

Query: 114 WRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNE-----LQEIAVRFEEKIYTAATNQS 278
           W   +  + RS +V+K+++ +    P   P  L +     L   A + E  +Y +A ++ 
Sbjct: 591 WHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRD 647

Query: 279 DYLRKISLKMLSMETKTQQAP----------GNAQVIPNQNNSAPGLPPQGSNQAQTSVI 428
           +Y   ++ K+  ++ + ++            GN   +P      P +PP  S +     +
Sbjct: 648 EYYHLLAEKIYKIQKELEEKRRTRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPNGPL 707

Query: 429 PL-MSQQQARQPNSS 470
           PL +++ Q  Q  +S
Sbjct: 708 PLPVNRMQVSQGMNS 722

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 270 NQSDYLRKISLKMLSMETKTQQAPGNAQVIPN-QNNSAPGLPPQGSNQAQTSVIPLMSQQ 446
           N+SD       +ML  +    QAP  A   P+      P LP QG   + T+V P  S  
Sbjct: 721 NESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPA 780

Query: 447 QARQPNSSTS 476
            ++ PN + S
Sbjct: 781 TSQPPNQTQS 790

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>SPD5_CAEEL (P91349) Spindle-defective protein 5|
          Length = 1198

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
 Frame = +3

Query: 147  RIVNKIMETLKKHLPVSV-PEGLNELQEIAVRFEEKIYTAATNQSDY----------LRK 293
            RI  +I E  KK L   + P  ++ +Q +      ++      Q +Y          + K
Sbjct: 953  RISKEISELTKKTLKAKIIPSNISSIQLVCDELCRRLSREREQQHEYAKVMRDVNEKIEK 1012

Query: 294  ISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQ 410
            + L+  ++E + +    N + +P    S  G+P + SNQ
Sbjct: 1013 LQLEKDALEHELKMMSSNNENVPPVGTSVSGMPTKTSNQ 1051

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>CINA_PROMA (Q7VDS9) CinA-like protein|
          Length = 423

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
 Frame = +3

Query: 147 RIVNKIMETLKKHLPVSVPEGLNE------LQEIAVRFEEKIYTAATNQSDYLRKISLKM 308
           R++  I+E  ++   +    GL        ++ IA  F  K+    T  +D L+ I  K+
Sbjct: 56  RLLRIILEASRRSRVLITTGGLGPTPDDLTIETIASAFNVKL----TKNNDILKDIKRKL 111

Query: 309 LS----METKTQQA--PGNAQVIPNQNNSAPGL 389
            S     E   +QA  P  A++IPN++ +APG+
Sbjct: 112 NSHSHVSENNFKQALLPEGAEIIPNKSGTAPGI 144

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>DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contains: Dentin|
            phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
            sialoprotein (DSP)]
          Length = 1253

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = +2

Query: 161  DNGNSQEASASICARGTQRTSRNRCQIRREDLYCSNQSV*LFAEDFSENALYGDEDTTSS 340
            D+ NS ++S S  +  +  +S +       D   SN S    + D S+++   D   +S 
Sbjct: 787  DSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSD 846

Query: 341  WKCSSDTKSKQLRSWTASTRQQSSTNISNSLDVS 442
               SSD+ S      + S+    S++ SNS D S
Sbjct: 847  SSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSS 880

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>FGF8_MOUSE (P37237) Fibroblast growth factor 8 precursor (FGF-8) (HBGF-8)|
           (Androgen-induced growth factor) (AIGF)
          Length = 268

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 363 NQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQPNSST 473
           N  N AP  P +GS + + SV+P ++Q+  R+ +  T
Sbjct: 60  NFTNPAPNYPEEGSKEQRDSVLPKVTQRHVREQSLVT 96

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>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein|
           (PDCD6-interacting protein) (ALG-2-interacting protein
           1) (Hp95)
          Length = 868

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 213 NELQEIAVRFEEK---IYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAP 383
           NEL EI VRF+ K   I  A   + D L K   + ++ E      P  A     Q++ A 
Sbjct: 678 NELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAY----QSSPAG 733

Query: 384 GLPPQGSNQAQTSVIPLMSQQQARQP 461
           G  P     A  ++ P   Q  AR P
Sbjct: 734 GHAPTPPTPAPRTMPPTKPQPPARPP 759

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>LIPS_HUMAN (Q05469) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 1076

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
 Frame = +3

Query: 264 ATNQSDYLRKISLKM----------LSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQA 413
           A  QS Y++++ L            L  E+ TQQ P   Q    Q    PG PP    +A
Sbjct: 94  APQQSPYIQRVLLTQQEAASQQGPGLGKESITQQEPALRQRHVAQPGPGPGEPPPAQQEA 153

Query: 414 QTSVIPLMSQQQARQPNSST 473
           +++          R+P++ T
Sbjct: 154 ESTPAAQAKPGAKREPSAPT 173

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 270 NQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPG---LPPQGSNQAQTSVIPLMS 440
           N+SD       +ML  +    QAP  A   P  + + PG   LP  G   + T+V P  S
Sbjct: 720 NESDSDSSAQQQMLQTQPPALQAPSGAASAP--STAPPGTTQLPTPGPTPSATTVPPQGS 777

Query: 441 QQQARQPNSSTS 476
              ++ PN + S
Sbjct: 778 PATSQPPNQTQS 789

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>PBPA_STRR6 (Q8DR59) Penicillin-binding protein 1A (PBP-1A) (Exported protein|
           2)
          Length = 719

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 329 TTSSWKCSSDTKSKQLRSWTASTRQQSSTNISNSLDVSATGP 454
           +T S   SSD+ + Q  S T ST   ++TN +N+   S T P
Sbjct: 666 STESSSSSSDSSTSQSSSTTPSTNNSTTTNPNNNTQQSNTTP 707

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>PBPA_STRPN (Q04707) Penicillin-binding protein 1A (PBP-1A)|
          Length = 719

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 329 TTSSWKCSSDTKSKQLRSWTASTRQQSSTNISNSLDVSATGP 454
           +T S   SSD+ + Q  S T ST   ++TN +N+   S T P
Sbjct: 666 STESSSSSSDSSTSQSSSTTPSTNNSTTTNPNNNTQQSNTTP 707

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>HSP82_ASHGO (Q8J2M3) Heat shock protein HSP82|
          Length = 704

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 156 NKIMETLKKHLPVSVPEGLNELQEIAVRFEEKIYTA 263
           NKIM+ +KK++   + E  NE+ E + +F EK Y+A
Sbjct: 381 NKIMKVIKKNIVKKLIEAFNEIAEDSEQF-EKFYSA 415

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>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex combs)|
          Length = 1368

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +3

Query: 189  PVSVPEGLNELQEIAVRFEEK--IYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIP 362
            P S+    N++ + ++  +E      A  +Q+  +       L M+T  Q     A  +P
Sbjct: 735  PSSIASAANKMPKRSMSLDESHPAKQARLSQAQAMASSYAAKLHMQTSNQAKSQAAAFLP 794

Query: 363  NQNNSAPGLPPQGSNQAQTSVIPLMSQQQ 449
            N    + GLP  GS      + P  S  Q
Sbjct: 795  NPQMRSYGLPDLGSKPTLPMLCPASSSSQ 823

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>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 318 ETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQ 458
           +TK+ ++PG  Q+ P      P  PPQG  +   S  P  S+  ++Q
Sbjct: 412 QTKSAKSPGQGQLGPLLGQPQPRPPPQGGPRQAQSPQPPRSRSPSQQ 458

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>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)|
          Length = 580

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 300 LKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQ 458
           L+  + + K+ ++PG AQ+ P      P  PPQG  +   S  P  S   ++Q
Sbjct: 407 LRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQ 459

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>EX7S_ERWCT (Q6D842) Probable exodeoxyribonuclease VII small subunit (EC|
           3.1.11.6) (Exonuclease VII small subunit)
          Length = 82

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 177 KKHLPVSVPEGLNELQEIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQV 356
           K   PVS    LNEL++I  R E          +++   I L     + K QQA    Q+
Sbjct: 4   KTEQPVSFESSLNELEKIVTRLESGELPLDDALNEFEHGIQLARQGQQ-KLQQAEQRVQI 62

Query: 357 IPNQNNSAPGLP 392
           + + +  AP  P
Sbjct: 63  LLSDDPDAPLSP 74

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>MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)|
          Length = 1875

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +3

Query: 213  NELQEIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQ-APGNAQVIPNQNNSAPGL 389
            NELQ I  +  ++    A  ++  L +   KM S  ++T+Q A    + + N  N   GL
Sbjct: 1634 NELQAIKKKSFDEGKQQAMMKTTLLERKLAKMESQLSETKQSAESPPKSVNNVQNPLLGL 1693

Query: 390  PPQGSNQAQTSVIPLMSQQQARQPNSSTS 476
            P +    + +   PL+S ++  + NS +S
Sbjct: 1694 PRKIEENSNSPFNPLLSGEKLLKLNSKSS 1722

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>HIS5_RHORT (Q2RNA5) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 214

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -1

Query: 272 IGCCSIDLLFESDSD-FLKFVESLWHRYWQMLLESFHYLIDDPATRL-GLELGAPITS 105
           +G  S+D  F++DS   L  +E   H Y+   + S+H+   DPATRL  +E G P+T+
Sbjct: 129 MGWNSLD--FQADSHALLAGIEPGTHVYF---VHSYHFRPADPATRLASVEYGGPLTA 181

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>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
            (Cut-like 2)
          Length = 1424

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 333  QAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLM----SQQQARQPNSSTS 476
            Q PG +Q  P +  S+P  PP  +   ++S  PL     S ++ +QP   +S
Sbjct: 907  QQPGASQASPTEPRSSPSPPPSPTEPEKSSQEPLSLSLESSKENQQPEGRSS 958

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>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent|
           helicase brm) (Protein brahma)
          Length = 1638

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 288 RKISLKML-SMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQ 449
           + IS++M  +++   QQ P    + P     APG PP GS  A    +P   QQQ
Sbjct: 196 KPISMQMQQALQAAQQQPPPGPPIGPP---GAPGGPPPGSQHAGQPPVPPQQQQQ 247

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>TRPE_ACICA (P23315) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 497

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 243 EEKIYTAATNQSDYLRKISLKMLSMETKTQQAP 341
           +E+ Y  A NQ DYL ++    +S++ K  +AP
Sbjct: 181 DEEAYQRAQNQLDYLERLLATPVSLQAKKHKAP 213

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>PHEA_AQUAE (O67085) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);|
           Prephenate dehydratase (EC 4.2.1.51) (PDT)]
          Length = 362

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 141 RSRIVNKIMETLKK-HLPVSVPEGLNELQEIAVRFEEKIYTAATNQSDYL---RKISLKM 308
           R+++  +I E   K +LP+ VPE   E+ E  +R  +++Y     Q   +   R+I    
Sbjct: 25  RAKLAKRIGEIKSKANLPIHVPEREREIFEKILRLNKEVYGGVFPQEALVHIYREIISAC 84

Query: 309 LSMETKTQQA 338
           LS+E K + A
Sbjct: 85  LSLEKKIKVA 94

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>P5CS_MOUSE (Q9Z110) Delta 1-pyrroline-5-carboxylate synthetase (P5CS)|
           (Aldehyde dehydrogenase 18 family member A1) [Includes:
           Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)
           (GK); Gamma-glutamyl phosphate reductase (GPR) (EC
           1.2.1.41) (Glutamate
          Length = 795

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/81 (19%), Positives = 36/81 (44%)
 Frame = +3

Query: 102 TGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQEIAVRFEEKIYTAATNQSD 281
           +GG   A L+PE R+ I+N + + L       +     +L+E   R    +    +  + 
Sbjct: 372 SGGRMLATLEPEQRAEIINHLADLLTDQREEILLANKKDLEEAEGRLASPLLKRLSLSTS 431

Query: 282 YLRKISLKMLSMETKTQQAPG 344
            L  +++ +  +   +Q++ G
Sbjct: 432 KLNSLAIGLRQIAASSQESVG 452

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>RPOB_EMIHU (Q4G3A7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1093

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +3

Query: 207 GLNELQEIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPG 386
           G+ +  ++ VR+++ I T + N+ DY+    ++++S+ T          +IP   +    
Sbjct: 487 GVLKQPDVPVRYQQNIVTVSKNEVDYIAVSPIQVVSLAT---------SLIPFLEHDDAN 537

Query: 387 LPPQGSNQAQTSVIPLM 437
               GSN  + SV PL+
Sbjct: 538 RALMGSNMQRQSV-PLL 553

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>PREA_BACTU (P10025) Plasmid recombination enzyme (Mobilization protein) (GI2|
           site-specific recombinase)
          Length = 445

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 165 METLKKHLPVSVPEGLNELQEIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPG 344
           +  +K HL   V E  N+LQ+     E+        Q++ L+KI  + LS++ K ++   
Sbjct: 203 LSNVKTHLKTKVVETHNQLQQTTNYIEK--------QNETLQKIQQQFLSLDKKIKEKKQ 254

Query: 345 NAQVIPNQNNSAP 383
             +   NQ    P
Sbjct: 255 EFETFRNQIPDKP 267

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>ECM27_YEAST (P47144) Extracellular matrix protein 27|
          Length = 725

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 338 SWKCSSDTKSKQLRSWTASTRQQSSTNISNSL 433
           SW  SS      L SW  STR+  ST++S S+
Sbjct: 85  SWCNSSPDLFSNLMSWATSTRETRSTSVSLSI 116

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>MATK_CICAR (Q5YK05) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = +1

Query: 226 KSLSDSKRRSILQQPIS---------LIICGRFL*KCSLWRRRHNKLLEMLK*YQIKTTP 378
           +SL+  K  ++L  PIS         L I  RFL  C      +N   +    YQIK   
Sbjct: 373 RSLAKGKFCNVLGHPISKPVWADSSDLDIIDRFLRICRNLSHYYNGSSKKKSLYQIKYIL 432

Query: 379 LLDCLHKAAIKHK 417
            L C+   A KHK
Sbjct: 433 RLSCIKTLACKHK 445

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>YRP4_SHVX (Q04583) Hypothetical 42.2 kDa protein in replicase gene 3'region|
           (ORF4)
          Length = 380

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 258 TAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTS 422
           T+ATN SD LRK+     S++T  +Q      V+ +  N+    PP  S+   +S
Sbjct: 216 TSATNHSDILRKLE----SLDTGLKQLGIRLDVVVSSLNNMSERPPTPSHDTASS 266

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>CYK3_YEAST (Q07533) Cytokinesis protein 3|
          Length = 885

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +3

Query: 156 NKIMETLKKHLPVSVPEGLNELQEIAVRFEEKIYTAATNQS----DYLRKISLKMLSMET 323
           +KI+E+ +K   V +P   +   +   R ++K+ ++  N      D L K + K  S E 
Sbjct: 83  SKIVESFEKSNKVVIPPVPSRYSDERPRPKKKLSSSMPNSPKKPVDSLTK-ARKAKSKEM 141

Query: 324 KTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQ 416
             ++   N Q   + NNSAP LP    ++ Q
Sbjct: 142 VNEKNIYNTQSSRHHNNSAPNLPLASHSKPQ 172

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>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 318 ETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQ 458
           +TK  ++PG  Q+ P      P  PPQG  +   S  P  S+  ++Q
Sbjct: 412 QTKPAKSPGQGQLGPLLGQPQPRPPPQGGPRQAQSPQPPRSRSPSQQ 458

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>CDC54_YEAST (P30665) Cell division control protein 54|
          Length = 933

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 215 RTSRNRCQIRREDLYCSNQSV*LFAEDFSENALYGDEDTTSSWKCSSDTKSKQLRSW-TA 391
           R  +NR  +RR D++ S+ S      DF   +     DT+SS    S+        W T 
Sbjct: 125 RNGQNRVHMRRNDIHTSDLSSPRRIVDFDTRSGVNTLDTSSSSAPPSEASEPLRIIWGTN 184

Query: 392 STRQQSSTNISNSL 433
            + Q+ +TN  N L
Sbjct: 185 VSIQECTTNFRNFL 198

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>VE2_HPV35 (P27222) Regulatory protein E2|
          Length = 367

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 308 ALYGDEDTTSSWKCSSDTKSKQLRSWTASTRQQ-----SSTNISNSLDVS 442
           ALY D  +T  W C++D K   + + T +T  Q     ++  I N++ VS
Sbjct: 312 ALYQDASSTWRWTCTNDKKQIAIVTLTYTTEYQRDKFLTTVKIPNTVTVS 361

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>MATK_CARAB (Q9TKP0) Maturase K (Intron maturase)|
          Length = 503

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +1

Query: 226 KSLSDSKRRSILQQPISLIICG---------RFL*KCSLWRRRHNKLLEMLK*YQIKTTP 378
           +SL+ +K  ++L+ PIS  + G         RFL  C      +N   +    Y+IK   
Sbjct: 370 RSLAKAKFCNVLRDPISKPVWGDSSDFDIIERFLRICRNLSHYYNGSSKKKSLYRIKYIL 429

Query: 379 LLDCLHKAAIKHK 417
            L C+   A KHK
Sbjct: 430 RLSCIKTLACKHK 442

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>MAM_DROME (P21519) Neurogenic protein mastermind|
          Length = 1594

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 339  PGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQ 449
            PG  Q  PNQN S   +P  G + +Q+  +    QQQ
Sbjct: 1002 PGQQQQQPNQNMSNANVPSDGFSLSQSQSMNFNQQQQ 1038

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>HSP82_YEAST (P02829) ATP-dependent molecular chaperone HSP82 (Heat shock|
           protein Hsp90 heat-inducible isoform) (82 kDa heat shock
           protein)
          Length = 709

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 156 NKIMETLKKHLPVSVPEGLNELQEIAVRFEEKIYTA 263
           NKIM+ ++K++   + E  NE+ E + +F EK Y+A
Sbjct: 386 NKIMKVIRKNIVKKLIEAFNEIAEDSEQF-EKFYSA 420

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>POL2_TRSV (Q6UR06) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1101

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +3

Query: 222 QEIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSA--PGLPP 395
           +E  + F+E ++     ++D   ++SL    M  K  +   +  ++P ++     PG  P
Sbjct: 271 EENRISFDEGVHLT---EADVFHRLSLAKRFMAHKRDRTLVDV-LMPTEHEVVRYPGTRP 326

Query: 396 QGSNQAQTSVIPLMSQQQARQ 458
            G+ Q   S +P MS++ AR+
Sbjct: 327 DGTLQMCVSALPRMSEEAARK 347

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>ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Agglutinin-like|
           adhesin)
          Length = 1419

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 326 DTTSSWKCSSDTKSKQLRSWTASTRQQSS---TNISNSLDVS 442
           DTTS W  SS        +W++S   QSS    ++SNS+  S
Sbjct: 742 DTTSFWDSSSSDLESTSITWSSSIDAQSSHLVQSVSNSISTS 783

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>VGF_BPPHK (Q38041) Capsid protein (F protein) (GPF)|
          Length = 431

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 224 LKFVESLWHR-------YWQMLLESFHYLIDDPATRLGLEL 123
           +K  ES+W+R       Y   LLE F +L D P T  G +L
Sbjct: 344 IKVAESIWYRTHPDYVNYKYQLLEGFPFLDDAPGTTSGDDL 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,425,824
Number of Sequences: 219361
Number of extensions: 1043295
Number of successful extensions: 4543
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4523
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result