>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (DIS3 protein homolog)
          Length = 958

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 12/95 (12%)
 Frame = +1

Query: 184 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXX------------XXXXX 327
           ML+SK+F+KKT+ G V+K+VREHYLRDDI CGA  C +C                     
Sbjct: 1   MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVC 60

Query: 328 XXXXILVVDTNVVLHQIDLLENPAIEDVVVLSVVL 432
                L+ DTNV+LHQID+LE+PAI +V+VL  VL
Sbjct: 61  PQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVL 95

>RRP44_YEAST (Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (Protein DIS3)
          Length = 1001

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
 Frame = +1

Query: 196 KSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSC------------------XXXXXXX 321
           K FV+ ++ G   K+VREHYLR DIPC + SC  C                         
Sbjct: 22  KVFVR-SRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELS 80

Query: 322 XXXXXXILVVDTNVVLHQIDLLENP-AIEDVVVLSVVLD 435
                  +V+DTNVVL  IDLLENP    DV+V  +VLD
Sbjct: 81  APIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLD 119

>DIS3_SCHPO (P37202) Mitotic control protein dis3|
          Length = 970

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
 Frame = +1

Query: 190 QSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXXXXXXXXXX---------- 339
           + + FV+ T+ G+V KVVRE YLR+DIPC + +CP C                       
Sbjct: 18  RDRVFVRATR-GKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMF 76

Query: 340 -------ILVVDTNVVLHQIDLLENP-AIEDVVVLSVV 429
                   L+ D+N+  H ID LE+P    DV++L  V
Sbjct: 77  LEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTV 114

>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)|
           (Ribosomal RNA-processing protein 44) (DIS3 protein
           homolog)
          Length = 1029

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
 Frame = +1

Query: 211 KTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXX----------XXXXXXXXILVVDTN 360
           + + G+V K   E YLR+D+ CG   C +C                        L+VD+ 
Sbjct: 21  QNRSGKVYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIENPVRNAKVGRHALIVDST 80

Query: 361 VVLHQIDLLENPAIEDVVVLSVV 429
            ++   DL ++  + D++V   V
Sbjct: 81  SLIRFYDLFDSSLLRDLIVTQTV 103

>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)|
            (Rho-interacting, serine/threonine-protein kinase 21)
          Length = 2055

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 433  PAPPTAPRHPQSPDSP 386
            PAPP  P HP+ P +P
Sbjct: 1967 PAPPEGPSHPREPSTP 1982

>CTRO_HUMAN (O14578) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)|
            (Rho-interacting, serine/threonine-protein kinase 21)
          Length = 2027

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 433  PAPPTAPRHPQSPDSP 386
            PAPP  P HP+ P +P
Sbjct: 1941 PAPPEGPSHPREPSTP 1956


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,204,975
Number of Sequences: 219361
Number of extensions: 281063
Number of successful extensions: 1322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)