ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2727 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Plus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccagatcgatttgttggagaatccggcg 399 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| Sbjct: 157 atcctcgtcgtcgacaccaacgtcgtgctccaccagatcgatttgctggagaatccagcg 216 Query: 400 attgaggatgt 410 ||||| ||||| Sbjct: 217 attgacgatgt 227 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 188 tgcagagcaagtcgttcgtcaagaagacgaagcagggccgcgtcgtcaaggtggtccggg 247 ||||||||||| | ||||| |||||||||| | ||||||||| ||||||||| ||| Sbjct: 5 tgcagagcaagaccttcgtgaagaagacgagggcaggccgcgtccagaaggtggtcaggg 64 Query: 248 agcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 65 agcactacctccgcgacgacatctcctgcggcgccgcctcctgc 108
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 236 aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1640988 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 1640933 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccag 375 |||||||||||||| ||||||||||||||||||||| Sbjct: 1640884 atcctcgtcgtcgacaccaacgtcgtgctccaccag 1640849 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 373 cagatcgatttgttggagaatccggcgattgaggatgt 410 |||||||||||| |||||||||| |||||||| ||||| Sbjct: 1640772 cagatcgatttgctggagaatccagcgattgacgatgt 1640735 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccgcca 98 ||||||||||||||||||||||| Sbjct: 31136646 ctccttcaccgccgccgccgcca 31136624 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 27569541 cactccatcaccgccgccgccgcc 27569564 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 2397084 ccttcaccgccgccgccgcc 2397103 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 1641139 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 1641092
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07, complete sequence Length = 87592 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 236 aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 48434 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 48379 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccag 375 |||||||||||||| ||||||||||||||||||||| Sbjct: 48330 atcctcgtcgtcgacaccaacgtcgtgctccaccag 48295 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 373 cagatcgatttgttggagaatccggcgattgaggatgt 410 |||||||||||| |||||||||| |||||||| ||||| Sbjct: 48218 cagatcgatttgctggagaatccagcgattgacgatgt 48181 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 48585 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 48538
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07, complete sequence Length = 127098 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 236 aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 120549 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 120494 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccag 375 |||||||||||||| ||||||||||||||||||||| Sbjct: 120445 atcctcgtcgtcgacaccaacgtcgtgctccaccag 120410 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 373 cagatcgatttgttggagaatccggcgattgaggatgt 410 |||||||||||| |||||||||| |||||||| ||||| Sbjct: 120333 cagatcgatttgctggagaatccagcgattgacgatgt 120296 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 120700 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 120653
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 236 aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1640986 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 1640931 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccag 375 |||||||||||||| ||||||||||||||||||||| Sbjct: 1640882 atcctcgtcgtcgacaccaacgtcgtgctccaccag 1640847 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 373 cagatcgatttgttggagaatccggcgattgaggatgt 410 |||||||||||| |||||||||| |||||||| ||||| Sbjct: 1640770 cagatcgatttgctggagaatccagcgattgacgatgt 1640733 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccgcca 98 ||||||||||||||||||||||| Sbjct: 31227169 ctccttcaccgccgccgccgcca 31227147 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 27660864 cactccatcaccgccgccgccgcc 27660887 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 2397194 ccttcaccgccgccgccgcc 2397213 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 1641137 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 1641090
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 236 aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 291 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 53451 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 53396 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 340 atcctcgtcgtcgataccaacgtcgtgctccaccag 375 |||||||||||||| ||||||||||||||||||||| Sbjct: 53347 atcctcgtcgtcgacaccaacgtcgtgctccaccag 53312 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 373 cagatcgatttgttggagaatccggcgattgaggatgt 410 |||||||||||| |||||||||| |||||||| ||||| Sbjct: 53235 cagatcgatttgctggagaatccagcgattgacgatgt 53198 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 53602 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 53555
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccgcca 98 ||||||||||||||||||||||| Sbjct: 57287 ctccttcaccgccgccgccgcca 57265
>ref|NM_127305.2| Arabidopsis thaliana RNA binding / ribonuclease AT2G17510 mRNA, complete cds Length = 3013 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 352 gataccaacgtcgtgctccaccagatcgatttgttgga 389 |||||||||||||| || ||||| || ||||||||||| Sbjct: 249 gataccaacgtcgttcttcaccaaattgatttgttgga 286
>ref|XM_483293.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2519 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 673 ctccttcaccgccgccgccgcc 652
>ref|XM_464517.1| Oryza sativa (japonica cultivar-group), mRNA Length = 477 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 115 ctccttcaccgccgccgccgcc 136
>gb|AY090298.1| Arabidopsis thaliana At2g17510/MJB20.7 mRNA, complete cds Length = 2802 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 352 gataccaacgtcgtgctccaccagatcgatttgttgga 389 |||||||||||||| || ||||| || ||||||||||| Sbjct: 163 gataccaacgtcgttcttcaccaaattgatttgttgga 200
>gb|AY057479.1| Arabidopsis thaliana At2g17510/MJB20.7 mRNA, complete cds Length = 2992 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 352 gataccaacgtcgtgctccaccagatcgatttgttgga 389 |||||||||||||| || ||||| || ||||||||||| Sbjct: 248 gataccaacgtcgttcttcaccaaattgatttgttgga 285
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 25321267 ctccttcaccgccgccgccgcc 25321288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tcactccttcaccgccgccg 92 |||||||||||||||||||| Sbjct: 5343649 tcactccttcaccgccgccg 5343668
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 27759202 ctccttcaccgccgccgccgcc 27759223 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 5652384 ctccttcaccgccgccgccgcc 5652405
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 44535 ctccttcaccgccgccgccgcc 44556
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 80120 ctccttcaccgccgccgccgcc 80141
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 96452 ctccttcaccgccgccgccgcc 96473
>dbj|AK101254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F20, full insert sequence Length = 2519 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccgcc 97 |||||||||||||||||||||| Sbjct: 673 ctccttcaccgccgccgccgcc 652
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 gccttctcctgcccctcctgc 300 ||||||||||||||||||||| Sbjct: 825987 gccttctcctgcccctcctgc 825967
>ref|XM_952343.1| Neurospora crassa OR74A hypothetical protein (NCU07211.1) partial mRNA Length = 1176 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 tggtgctgtcggtggtgctgg 433 ||||||||||||||||||||| Sbjct: 687 tggtgctgtcggtggtgctgg 707
>ref|XM_327496.1| Neurospora crassa OR74A hypothetical protein (NCU07211.1) partial mRNA Length = 1176 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 tggtgctgtcggtggtgctgg 433 ||||||||||||||||||||| Sbjct: 687 tggtgctgtcggtggtgctgg 707
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 tgctgtcggtggtgctggacg 436 ||||||||||||||||||||| Sbjct: 375597 tgctgtcggtggtgctggacg 375617
>emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC contig B8G12 Length = 154038 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 tggtgctgtcggtggtgctgg 433 ||||||||||||||||||||| Sbjct: 35736 tggtgctgtcggtggtgctgg 35716
>emb|CR858618.1| Pongo pygmaeus mRNA; cDNA DKFZp469O078 (from clone DKFZp469O078) Length = 4398 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 69 cgcttcactccttcaccgccgccgccgcc 97 |||||||||||| | |||||||||||||| Sbjct: 77 cgcttcactcctcctccgccgccgccgcc 49
>ref|XM_311345.2| Anopheles gambiae str. PEST ENSANGP00000021380 (ENSANGG00000018891), partial mRNA Length = 969 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 gagctcgccaagatgctgcag 192 ||||||||||||||||||||| Sbjct: 253 gagctcgccaagatgctgcag 273
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 ggtgctgtcggtggtgctgga 434 ||||||||||||||||||||| Sbjct: 897481 ggtgctgtcggtggtgctgga 897501
>ref|XM_464352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1698 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 413 ccttcaccgccgccgccgcc 432
>ref|XM_450948.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1179 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 995 ccttcaccgccgccgccgcc 976
>ref|NM_190495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1752 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 142 ccttcaccgccgccgccgcc 123
>ref|XM_469367.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 84 cactccatcaccgccgccgccgcc 61
>gb|AY022688.1| Oryza sativa microsatellite MRG5013 containing (CCG)X8, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 170 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 217 |||| |||||| | ||| ||||||||||| | ||||| |||||||||| Sbjct: 139 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 186
>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084F23, complete sequence Length = 89829 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 24048 ccttcaccgccgccgccgcc 24067
>gb|AY731551.1| Arachis hypogaea clone PM736 microsatellite sequence Length = 350 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 70 gcttcactccttcaccgccgccgccgcc 97 ||||||||||| | |||||||||||||| Sbjct: 239 gcttcactcctccgccgccgccgccgcc 212
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gtcgataccaacgtcgtgct 368 |||||||||||||||||||| Sbjct: 3618589 gtcgataccaacgtcgtgct 3618570
>gb|AC122254.4| Mus musculus BAC clone RP23-171M24 from 3, complete sequence Length = 198281 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ccttctcctgcccctcctgc 300 |||||||||||||||||||| Sbjct: 1396 ccttctcctgcccctcctgc 1377
>emb|AJ717426.1| Pseudomonas chlororaphis partial rpoB gene for DNA-directed RNA polymerase beta chain, strain LMG 1245T Length = 1166 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 actccttcaccgccgccgcc 94 |||||||||||||||||||| Sbjct: 109 actccttcaccgccgccgcc 90
>gb|AC125408.3| Mus musculus BAC clone RP23-94M23 from 3, complete sequence Length = 210519 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ccttctcctgcccctcctgc 300 |||||||||||||||||||| Sbjct: 107182 ccttctcctgcccctcctgc 107201
>emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chromosome 6q25.2-26 Contains part of a novel gene, a signal recognition particle 72kD (SRP72) pseudogene and three CpG islands, complete sequence Length = 100732 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 64320 ccttcaccgccgccgccgcc 64339
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gtcgataccaacgtcgtgct 368 |||||||||||||||||||| Sbjct: 156026 gtcgataccaacgtcgtgct 156007
>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3 Length = 345637 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ctagacgaccacggcacgca 53 |||||||||||||||||||| Sbjct: 73630 ctagacgaccacggcacgca 73649
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tggtgctgtcggtggtgctg 432 |||||||||||||||||||| Sbjct: 182398 tggtgctgtcggtggtgctg 182379
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gtcgataccaacgtcgtgct 368 |||||||||||||||||||| Sbjct: 135289 gtcgataccaacgtcgtgct 135270
>gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, complete sequence Length = 34319 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caagatgctgcagagcaagt 199 |||||||||||||||||||| Sbjct: 4236 caagatgctgcagagcaagt 4217
>ref|NM_142989.3| Drosophila melanogaster Dis3 CG6413-RA (Dis3), mRNA Length = 3599 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 244 cgggagcactacctccgcgacgacatcccctgcggc 279 ||||||||||| || |||||||||||| ||||||| Sbjct: 131 cgggagcactatctgcgcgacgacatcggctgcggc 166
>gb|AY052150.1| Drosophila melanogaster SD10981 full length cDNA Length = 3129 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 244 cgggagcactacctccgcgacgacatcccctgcggc 279 ||||||||||| || |||||||||||| ||||||| Sbjct: 132 cgggagcactatctgcgcgacgacatcggctgcggc 167
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 234 caaggtggtccgggagcactacctccgcgacgacat 269 ||||||||| ||||||||||| || ||| ||||||| Sbjct: 577387 caaggtggtgcgggagcactatctgcgcaacgacat 577352
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cactccttcaccgccgccgccgcc 97 ||||||||| |||||||||||||| Sbjct: 27044769 cactccttctccgccgccgccgcc 27044792
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 7534053 ccttcaccgccgccgccgcc 7534034
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 113926 ccttcaccgccgccgccgcc 113945
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 20869135 ccttcaccgccgccgccgcc 20869154 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 17736342 ccttcaccgccgccgccgcc 17736361
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 35881472 ccttcaccgccgccgccgcc 35881491
>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone BACR04E17, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 244 cgggagcactacctccgcgacgacatcccctgcggc 279 ||||||||||| || |||||||||||| ||||||| Sbjct: 83009 cgggagcactatctgcgcgacgacatcggctgcggc 83044
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 11238 cactccatcaccgccgccgccgcc 11261
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tcactccttcaccgccgccg 92 |||||||||||||||||||| Sbjct: 13460 tcactccttcaccgccgccg 13479
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 145930 ccttcaccgccgccgccgcc 145949
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 61361 ccttcaccgccgccgccgcc 61380
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 144164 ccttcaccgccgccgccgcc 144183
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 44976 ccttcaccgccgccgccgcc 44995
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tcactccttcaccgccgccg 92 |||||||||||||||||||| Sbjct: 135237 tcactccttcaccgccgccg 135256
>dbj|AK105847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G05, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 497 cactccatcaccgccgccgccgcc 474
>emb|AJ336802.1|HSA336802 Homo sapiens genomic sequence surrounding NotI site, clone NL6-BE9RS Length = 755 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 70 ccttcaccgccgccgccgcc 89
>dbj|AK099128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041C17, full insert sequence Length = 926 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 100 cactccatcaccgccgccgccgcc 77
>ref|NM_210184.1| Eremothecium gossypii AEL031Cp (AEL031C), mRNA Length = 2994 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 234 caaggtggtccgggagcactacctccgcgacgacat 269 ||||||||| ||||||||||| || ||| ||||||| Sbjct: 141 caaggtggtgcgggagcactatctgcgcaacgacat 176
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tggtgctgtcggtggtgctg 432 |||||||||||||||||||| Sbjct: 1504471 tggtgctgtcggtggtgctg 1504452
>dbj|AK061228.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A02, full insert sequence Length = 968 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 139 cactccatcaccgccgccgccgcc 116
>dbj|AK058834.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B10, full insert sequence Length = 434 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tcactccttcaccgccgccg 92 |||||||||||||||||||| Sbjct: 84 tcactccttcaccgccgccg 103
>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the complete sequence Length = 206741 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 244 cgggagcactacctccgcgacgacatcccctgcggc 279 ||||||||||| || |||||||||||| ||||||| Sbjct: 83265 cgggagcactatctgcgcgacgacatcggctgcggc 83300
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ctccttcaccgccgccgccg 95 |||||||||||||||||||| Sbjct: 726276 ctccttcaccgccgccgccg 726257
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 gtggtgctgtcggtggtgctggac 435 ||||||||||| |||||||||||| Sbjct: 168691 gtggtgctgtccgtggtgctggac 168714
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccttcaccgccgccgccgcc 97 |||||||||||||||||||| Sbjct: 7604139 ccttcaccgccgccgccgcc 7604120
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cactccttcaccgccgccgccgcc 97 ||||||||| |||||||||||||| Sbjct: 26970358 cactccttctccgccgccgccgcc 26970381
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 ||||||||| |||||||||||||| Sbjct: 111468 cactccttctccgccgccgccgcc 111445
>emb|AJ276897.1|DME276897 Drosophila melanogaster mRNA for putative exoribonuclease DIS3 Length = 3602 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 244 cgggagcactacctccgcgacgacatcccctgcggc 279 ||||||||||| || |||||||||||| ||||||| Sbjct: 132 cgggagcactatctgcgcgacgacatcggctgcggc 167
>dbj|AB026566.1| Oryza sativa (japonica cultivar-group) OsPBD1 mRNA for beta 4 subunit of 20S proteasome, complete cds Length = 882 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cactccttcaccgccgccgccgcc 97 |||||| ||||||||||||||||| Sbjct: 128 cactccatcaccgccgccgccgcc 105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,673,681 Number of Sequences: 3902068 Number of extensions: 2673681 Number of successful extensions: 195591 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 188065 Number of HSP's gapped (non-prelim): 7525 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
