ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54g05 |
|---|---|
| Clone Library Name | barley_pub |
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 57.0 bits (136), Expect = 2e-08 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEY-DAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPD 338 DA K E F +KV++ L +AY+ FL+CL I++QE+I+R+EL LVS L +P+ Sbjct: 455 DASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPE 514 Query: 339 LMVGFNEFLEHCENI 383 L F FL + E++ Sbjct: 515 LFNWFKNFLGYKESV 529 Score = 30.0 bits (66), Expect = 2.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 237 YQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 365 + +FL + + + I + + VS + + +PDL++GFN FL Sbjct: 144 HNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFL 186 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 15/77 (19%) Frame = +3 Query: 180 YTQEFHFCEKVKEKLEY--DAYQEFLKCLHIYSQE-------------IITRSELKNLVS 314 + ++ K+K + + D Y+ FL+ LH Y +E +T E+ V+ Sbjct: 304 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVA 363 Query: 315 DILQHYPDLMVGFNEFL 365 + ++ DL+ F +FL Sbjct: 364 RLFKNQEDLLSEFGQFL 380
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 56.2 bits (134), Expect = 3e-08 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEY-DAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPD 338 DA K E F +KV++ L +AY+ FL+CL I++QE+I+R+EL LVS L +P+ Sbjct: 454 DASKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPE 513 Query: 339 LMVGFNEFLEHCENI 383 L F FL + E++ Sbjct: 514 LFNWFKNFLGYKESV 528 Score = 32.0 bits (71), Expect = 0.62 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 237 YQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 365 Y +FL + + + I + + VS + + +PDL++GFN FL Sbjct: 144 YNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFL 186 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 15/77 (19%) Frame = +3 Query: 180 YTQEFHFCEKVKEKLEY--DAYQEFLKCLHIYSQE-------------IITRSELKNLVS 314 + ++ K+K + + D Y+ FL+ LH Y +E +T E+ V+ Sbjct: 304 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVA 363 Query: 315 DILQHYPDLMVGFNEFL 365 + ++ DL+ F +FL Sbjct: 364 RLFKNQEDLLSEFGQFL 380
>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1162 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +3 Query: 186 QEFHFCEKVKEKLE-YDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEF 362 QEF F +KV+ L+ + Y+ FL+C+ +++QE+++ SEL LVS L +P+L F F Sbjct: 306 QEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSF 365 Query: 363 L 365 L Sbjct: 366 L 366 Score = 33.5 bits (75), Expect = 0.21 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 198 FCEKVKEKLEYD--AYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEH 371 + ++VK + D Y FL+ + + + I + VS + +PDL+VGFN FL Sbjct: 47 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPL 106 Query: 372 CENID 386 ID Sbjct: 107 GYRID 111
>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1098 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +3 Query: 186 QEFHFCEKVKEKLE-YDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEF 362 QEF F +KV+ L+ + Y+ FL+C+ +++QE+++ SEL LVS L +P+L F F Sbjct: 297 QEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSF 356 Query: 363 L 365 L Sbjct: 357 L 357 Score = 33.5 bits (75), Expect = 0.21 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 198 FCEKVKEKLEYD--AYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEH 371 + ++VK + D Y FL+ + + + I + VS + +PDL+VGFN FL Sbjct: 40 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPL 99 Query: 372 CENID 386 ID Sbjct: 100 GYRID 104
>SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3| Length = 1536 Score = 37.4 bits (85), Expect = 0.015 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +3 Query: 153 DNKDALKSAYTQEFHFCEKVKEKL--EYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQ 326 D K + ++Q + K+K + + D Y+ FL+ L Y +E +E+ V+ + Q Sbjct: 399 DAKKNVDVEFSQAISYVNKIKTRFADQPDIYKHFLEILQTYQREQKPINEVYAQVTHLFQ 458 Query: 327 HYPDLMVGFNEFL 365 + PDL+ F +FL Sbjct: 459 NAPDLLEDFKKFL 471 Score = 35.0 bits (79), Expect = 0.074 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +3 Query: 186 QEFHFCEKVKEKL-EYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEF 362 +E F EK K + Y EFLK L++YSQ+I+ +L V L +L F F Sbjct: 664 EEVTFFEKAKRYIGNKHLYTEFLKILNLYSQDILDLDDLVEKVDFYLGSNKELFTWFKNF 723 Query: 363 LEHCE 377 + + E Sbjct: 724 VGYQE 728 Score = 33.5 bits (75), Expect = 0.21 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 4/121 (3%) Frame = +3 Query: 15 QDSKELDVG-QHKRKPFPSANLAAGAEAH---QGGHPEIHGIXXXXXXXHDNKDALKSAY 182 QD KE+ G Q P PS+N A + + + H E + KDAL Sbjct: 175 QDCKEVPAGVQPADAPDPSSNHADANDDNNNNENSHDE-----DADYRPLNVKDALSYLE 229 Query: 183 TQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEF 362 +F F + D Y FL + + + I + VS + + YP L+ GFN F Sbjct: 230 QVKFQFSSRP------DIYNLFLDIMKDFKSQAIDTPGVIERVSTLFRGYPILIQGFNTF 283 Query: 363 L 365 L Sbjct: 284 L 284
>PST3_SCHPO (O74755) Paired amphipathic helix protein pst3 (SIN3 homolog 3)| Length = 1154 Score = 36.2 bits (82), Expect = 0.033 Identities = 21/81 (25%), Positives = 36/81 (44%) Frame = +3 Query: 123 GIXXXXXXXHDNKDALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSELK 302 G+ D DAL +++F E+ + Y FL+ + + + + + Sbjct: 104 GLSSSSNRPLDVNDALSYLELVKYYFSER------REIYNRFLEIMRDFKSQALDTLGVI 157 Query: 303 NLVSDILQHYPDLMVGFNEFL 365 N VS++ YP L+ GFN FL Sbjct: 158 NRVSELFNGYPQLIEGFNTFL 178 Score = 31.6 bits (70), Expect = 0.81 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 198 FCEKVKEKL--EYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEH 371 + KVK + D Y EFL L Y + + E++ V++I + PDL+ F FL Sbjct: 262 YMNKVKARYPPNSDTYMEFLGVLRTYQKAQKSIFEVRARVAEIFKDSPDLLEEFKLFLP- 320 Query: 372 CENID 386 +N+D Sbjct: 321 -DNVD 324
>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)| Length = 1522 Score = 36.2 bits (82), Expect = 0.033 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = +3 Query: 207 KVKEKLEYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENID 386 K++ E + Y EFL + + + I E+ VS + YP+L+ GFN FL +I+ Sbjct: 193 KLQFHQEPEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYPNLIQGFNTFLPPGYSIE 252 Query: 387 ------GFLAGV 404 G LAG+ Sbjct: 253 ISSADPGSLAGI 264 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 189 EFHFCEKVKEKLEYDA-YQEFLKCLHIYSQEIITRSEL 299 E F E ++ L ++ Y EF+K L +YSQE+ ++ L Sbjct: 514 ELEFLEHARQYLANESKYNEFIKLLELYSQEVFDKNAL 551
>INVO_RAT (P48998) Involucrin| Length = 568 Score = 33.9 bits (76), Expect = 0.16 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 15/113 (13%) Frame = +3 Query: 3 KDGEQDSKELDVGQHKRKPFPSANLAAGAEAHQGG------------HPEIHGIXXXXXX 146 ++ ++ +++ QH++ P P +L E H+ PE+H Sbjct: 374 QESQESELQVEKKQHEKSPEPELHLGKQQELHEPDMTEDQKEKQSLHEPELHLGKQQESH 433 Query: 147 XHDNKDALK---SAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE 296 D + K S Y E H ++ ++++EY+ YQ + QE +R + Sbjct: 434 EPDMTEDQKEKQSLYEPELHLGKQQEQQIEYEGYQRSKSLNQLLKQEKASRGQ 486
>CAT_SALTI (P62580) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 219 Score = 32.3 bits (72), Expect = 0.48 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE-----LKNLVSDILQ 326 D++ YT FH + L + + +F + LHIYSQ++ E K + ++ Sbjct: 86 DSVHPCYTV-FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFF 144 Query: 327 HYPDLMVGFNEFLEHCENIDGFLAGVFS 410 + V F F + N+D F A VF+ Sbjct: 145 VSANPWVSFTSFDLNVANMDNFFAPVFT 172
>CAT_ECOLI (P62577) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 219 Score = 32.3 bits (72), Expect = 0.48 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE-----LKNLVSDILQ 326 D++ YT FH + L + + +F + LHIYSQ++ E K + ++ Sbjct: 86 DSVHPCYTV-FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFF 144 Query: 327 HYPDLMVGFNEFLEHCENIDGFLAGVFS 410 + V F F + N+D F A VF+ Sbjct: 145 VSANPWVSFTSFDLNVANMDNFFAPVFT 172
>CAT_ACIBA (P62579) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 219 Score = 32.3 bits (72), Expect = 0.48 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE-----LKNLVSDILQ 326 D++ YT FH + L + + +F + LHIYSQ++ E K + ++ Sbjct: 86 DSVHPCYTV-FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFF 144 Query: 327 HYPDLMVGFNEFLEHCENIDGFLAGVFS 410 + V F F + N+D F A VF+ Sbjct: 145 VSANPWVSFTSFDLNVANMDNFFAPVFT 172
>CAT_ACIAN (P62578) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 219 Score = 32.3 bits (72), Expect = 0.48 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE-----LKNLVSDILQ 326 D++ YT FH + L + + +F + LHIYSQ++ E K + ++ Sbjct: 86 DSVHPCYTV-FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFF 144 Query: 327 HYPDLMVGFNEFLEHCENIDGFLAGVFS 410 + V F F + N+D F A VF+ Sbjct: 145 VSANPWVSFTSFDLNVANMDNFFAPVFT 172
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +3 Query: 195 HFCEKVKEKLE-YDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 365 ++ + VK+K E + Y FL+ L+ + + S + + D+ + + DL++GFN +L Sbjct: 311 NYLKAVKDKFEDSEKYDTFLEVLNDCKHQGVDTSGVIARLKDLFKGHDDLLLGFNTYL 368
>PST2_SCHPO (O13919) Paired amphipathic helix protein pst2 (SIN3 homolog 2)| Length = 1075 Score = 30.0 bits (66), Expect = 2.4 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +3 Query: 153 DNKDALKSAYTQEFHFCEKVKEKL-EYDAYQEFLKCLHIYSQEIITRSEL 299 DN + F + VK L + + Y EFLK L++Y Q II R+ L Sbjct: 245 DNLSPFSHLSNESSDFFKNVKNVLTDVETYHEFLKLLNLYVQGIIDRNIL 294 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +3 Query: 198 FCEKVKEKL-----EYDAYQEFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEF 362 F +K+ ++L Y A+ + +K LH EI+ +S IL+ YPDL+ N F Sbjct: 42 FVQKLGQRLCHRPYVYSAFMDVVKALH---NEIVDFPGFIERISVILRDYPDLLEYLNIF 98 Query: 363 L 365 L Sbjct: 99 L 99
>NFIC_MOUSE (P70255) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 439 Score = 29.3 bits (64), Expect = 4.0 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -2 Query: 99 GVPQHLLQGLRLEKACAYAGQHPALCCLVHHL 4 G+P G RL KA A A HP LC HH+ Sbjct: 140 GIPLESTDGERLVKAAACA--HPVLCVQPHHI 169
>CAT_KLESP (P58777) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 219 Score = 29.3 bits (64), Expect = 4.0 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Frame = +3 Query: 162 DALKSAYTQEFHFCEKVKEKLEYDAYQEFLKCLHIYSQEIITRSE-----LKNLVSDILQ 326 D++ YT FH + L + + +F + LHIYSQ++ E K + ++ Sbjct: 86 DSVHPCYTV-FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFF 144 Query: 327 HYPDLMVGFNEFLEHCENIDGFLAGVFS 410 + V F F + +D F A VF+ Sbjct: 145 VSANPWVSFTSFDLNVAAMDNFFAPVFT 172
>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF| 3) (6-deoxyerythronolide B synthase III) (DEBS 3) Length = 3171 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 309 VSDILQHYPDLMVGFNEFLEHCENIDGF 392 VS ++ Y DL+ G ++F EH + DGF Sbjct: 2915 VSGRVRSYLDLLAGLSDFREHFDGSDGF 2942
>EI2BG_YEAST (P09032) Translation initiation factor eIF-2B gamma subunit (eIF-2B| GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD1) (GCD complex subunit GCD1) Length = 578 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +3 Query: 258 LHIYSQEIITRSELKNLVSDILQHYPDLMVG---FNEFLEHC 374 L +YSQ +T+++ + S +L +YP+L V N F+ C Sbjct: 239 LDVYSQRDVTKTKYLQIRSHLLWNYPNLTVSTKLLNSFIYFC 280
>RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (186 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (128 kDa protein)] Length = 1629 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 270 SQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENI 383 S+ ++ +E VSD++ P L F +F ++CE + Sbjct: 557 SEHLVATNEYYAKVSDLVDRNPTLAFDFEKFQDYCEKL 594 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,351,275 Number of Sequences: 219361 Number of extensions: 1167910 Number of successful extensions: 3027 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3026 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
