Clone Name | bastl54g02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463780.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5346 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 144 cagttagtgatcgcgcaaagttattcaaagataagtacttcccctctga 192 ||||||||||||| ||||||| ||||||||||| |||||||| ||||| Sbjct: 1871 cagttagtgatcgtgcaaagtcgttcaaagataaatacttcccttctga 1919
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 144 cagttagtgatcgcgcaaagttattcaaagataagtacttcccctctga 192 ||||||||||||| ||||||| ||||||||||| |||||||| ||||| Sbjct: 92525 cagttagtgatcgtgcaaagtcgttcaaagataaatacttcccttctga 92477
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 144 cagttagtgatcgcgcaaagttattcaaagataagtacttcccctctga 192 ||||||||||||| ||||||| ||||||||||| |||||||| ||||| Sbjct: 87134 cagttagtgatcgtgcaaagtcgttcaaagataaatacttcccttctga 87086
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 144 cagttagtgatcgcgcaaagttattcaaagataagtacttcccctctga 192 ||||||||||||| ||||||| ||||||||||| |||||||| ||||| Sbjct: 41552 cagttagtgatcgtgcaaagtcgttcaaagataaatacttcccttctga 41504
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 374 aaaatattgtctgaacttagca 395 |||||||||||||||||||||| Sbjct: 2355986 aaaatattgtctgaacttagca 2355965
>ref|XM_709563.1| Candida albicans SC5314 mannose-6-phosphate isomerase (CaO19.8968), mRNA Length = 1326 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 taattccttggatgaaccaaa 72 ||||||||||||||||||||| Sbjct: 285 taattccttggatgaaccaaa 265
>ref|XM_709469.1| Candida albicans SC5314 mannose-6-phosphate isomerase (CaO19.1390), mRNA Length = 1326 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 taattccttggatgaaccaaa 72 ||||||||||||||||||||| Sbjct: 285 taattccttggatgaaccaaa 265
>emb|AL139824.22| Human DNA sequence from clone RP11-380D15 on chromosome 20 Contains the MC3R gene for melanocortin 3 receptor, a zinc finger pseudogene and a novel gene, complete sequence Length = 193144 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 tcaaagtcactgggaggtgat 322 ||||||||||||||||||||| Sbjct: 9491 tcaaagtcactgggaggtgat 9511
>gb|AF527754.1| Takifugu rubripes hypothetical protein gene, partial cds; and twist neighbor (Twistnb), nephew of atonal 3 (Nato3), twist, sorting nexin 13 (Snx13), biotinidase precursor (Btd), and hypothetical protein genes, complete cds Length = 59563 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 11 agacgcagccgccgacgcagcagtgctgg 39 ||||| ||||||||| ||||||||||||| Sbjct: 42551 agacgtagccgccgaagcagcagtgctgg 42523
>emb|X82024.1|CAPMI1 C.albicans PMI1 gene Length = 1621 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 taattccttggatgaaccaaa 72 ||||||||||||||||||||| Sbjct: 493 taattccttggatgaaccaaa 473
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 aagggaaatcaaagtcactg 313 |||||||||||||||||||| Sbjct: 288733 aagggaaatcaaagtcactg 288714
>ref|NM_009234.5| Mus musculus SRY-box containing gene 11 (Sox11), mRNA Length = 7497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 148 cgcagccgccgacgcagcag 167
>ref|XM_708537.1| Candida albicans SC5314 ATPase (CaO19.8405), mRNA Length = 3384 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cactgttaaaacaaaagctaaagg 297 |||||||||||||||||| ||||| Sbjct: 684 cactgttaaaacaaaagccaaagg 661
>ref|XM_708500.1| Candida albicans SC5314 ATPase (CaO19.783), mRNA Length = 3384 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cactgttaaaacaaaagctaaagg 297 |||||||||||||||||| ||||| Sbjct: 684 cactgttaaaacaaaagccaaagg 661
>gb|AC132270.3| Mus musculus BAC clone RP24-338C23 from chromosome 5, complete sequence Length = 145471 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tgggagtggagttatctcag 446 |||||||||||||||||||| Sbjct: 18904 tgggagtggagttatctcag 18923
>ref|XM_848705.1| PREDICTED: Canis familiaris similar to myeloid/lymphoid or mixed-lineage leukemia 3 isoform 1 (LOC611073), mRNA Length = 3195 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tgccactgcagacactgtta 281 |||||||||||||||||||| Sbjct: 2418 tgccactgcagacactgtta 2399
>ref|XM_806693.1| Trypanosoma cruzi strain CL Brener DNA mismatch repair protein MSH2 (Tc00.1047053509643.80) partial mRNA Length = 2970 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttcaagacgcagccgccgac 26 |||||||||||||||||||| Sbjct: 2934 ttcaagacgcagccgccgac 2915
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 1496819 cgcagccgccgacgcagcag 1496800
>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence Length = 201723 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 agacactgttaaaacaaaag 290 |||||||||||||||||||| Sbjct: 144270 agacactgttaaaacaaaag 144251
>emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in linkage group 24, complete sequence Length = 209513 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 actctgtgcaaaattaaatg 263 |||||||||||||||||||| Sbjct: 39431 actctgtgcaaaattaaatg 39450
>gb|AC011345.5| Homo sapiens chromosome 5 clone CTC-293E5, complete sequence Length = 105797 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 aaagggaaatcaaagtcact 312 |||||||||||||||||||| Sbjct: 40127 aaagggaaatcaaagtcact 40146
>dbj|AK146514.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920019F16 product:SRY-box containing gene 11, full insert sequence Length = 2877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 114 cgcagccgccgacgcagcag 133
>dbj|AK165693.1| Mus musculus 14 days embryo lung cDNA, RIKEN full-length enriched library, clone:G630001I15 product:SRY-box containing gene 11, full insert sequence Length = 2824 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 149 cgcagccgccgacgcagcag 168
>dbj|AK165681.1| Mus musculus RCB-0545 OHTA cDNA, RIKEN full-length enriched library, clone:G430139G16 product:hypothetical protein, full insert sequence Length = 4207 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 agacactgttaaaacaaaag 290 |||||||||||||||||||| Sbjct: 1947 agacactgttaaaacaaaag 1966
>dbj|AK165005.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130116M20 product:SRY-box containing gene 11, full insert sequence Length = 2829 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 155 cgcagccgccgacgcagcag 174
>emb|BX005389.12| Zebrafish DNA sequence from clone DKEY-10F11 in linkage group 16, complete sequence Length = 221363 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 257 ttaaatgccactgcagacactgttaaaa 284 |||||||| ||||||| ||||||||||| Sbjct: 59309 ttaaatgctactgcaggcactgttaaaa 59336
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 aaaacaaaagctaaagggaaatcaaagt 308 |||| |||||||||||||||| |||||| Sbjct: 151041 aaaataaaagctaaagggaaagcaaagt 151068
>gb|AY005798.1| Trypanosoma cruzi MSH2 mRNA, complete cds Length = 3305 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttcaagacgcagccgccgac 26 |||||||||||||||||||| Sbjct: 2900 ttcaagacgcagccgccgac 2881
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 1539000 cgcagccgccgacgcagcag 1538981
>gb|AC114560.8| Mus musculus chromosome 15, clone RP23-54K6, complete sequence Length = 151670 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 agacactgttaaaacaaaag 290 |||||||||||||||||||| Sbjct: 48270 agacactgttaaaacaaaag 48251
>tpg|BK001484.1| TPA: TPA_exp: Mus musculus SRY-box containing protein (Sox11) mRNA, complete cds Length = 7497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 148 cgcagccgccgacgcagcag 167
>emb|BX005368.11| Zebrafish DNA sequence from clone CH211-64C10 in linkage group 6, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 aacaaaagctaaagggaaat 302 |||||||||||||||||||| Sbjct: 80465 aacaaaagctaaagggaaat 80484
>gb|AC158180.2| Selaginella moellendorffii chromosome JGIASXY-5A14, complete sequence Length = 36906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 6947 cgcagccgccgacgcagcag 6966
>emb|BX005137.9| Zebrafish DNA sequence from clone CH211-167L17 in linkage group 21, complete sequence Length = 156370 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 acactgttaaaacaaaagct 292 |||||||||||||||||||| Sbjct: 103987 acactgttaaaacaaaagct 104006
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gatattgcagttactgataa 225 |||||||||||||||||||| Sbjct: 1251614 gatattgcagttactgataa 1251595
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 155562 cgcagccgccgacgcagcag 155543
>gb|AC133174.5| Mus musculus BAC clone RP24-314N20 from 12, complete sequence Length = 208222 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ctgttaaaacaaaagctaaa 295 |||||||||||||||||||| Sbjct: 163265 ctgttaaaacaaaagctaaa 163246
>gb|BC053503.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone IMAGE:6329841) Length = 2917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 10 cgcagccgccgacgcagcag 29
>gb|BC078643.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone MGC:78354 IMAGE:30144974), complete cds Length = 2022 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 145 cgcagccgccgacgcagcag 164
>gb|AF009414.1|AF009414 Mus musculus SOX11 (Sox11) mRNA, complete cds Length = 2896 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgcagccgccgacgcagcag 33 |||||||||||||||||||| Sbjct: 132 cgcagccgccgacgcagcag 151
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 aagggaaatcaaagtcactg 313 |||||||||||||||||||| Sbjct: 296215 aagggaaatcaaagtcactg 296196
>dbj|AB031685.1| TT virus gene for ORF2 protein, partial cds, isolate:TTV BK1024 Length = 290 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tgccactgcagacactgtta 281 |||||||||||||||||||| Sbjct: 43 tgccactgcagacactgtta 62 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,817,598 Number of Sequences: 3902068 Number of extensions: 4817598 Number of successful extensions: 84431 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84256 Number of HSP's gapped (non-prelim): 175 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)