>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence
          Length = 194458

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 241    atgggttggggagatggcttgg 262
              ||||||||||||||||||||||
Sbjct: 118801 atgggttggggagatggcttgg 118780

>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   gaagctcgggggcctcatgggttgg 249
             |||||||||||||||| ||||||||
Sbjct: 72772 gaagctcgggggcctcctgggttgg 72748

>emb|AL732483.8| Mouse DNA sequence from clone RP23-70K10 on chromosome 2, complete
              sequence
          Length = 201542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 31     ctccttccccacatccatactctccatcc 59
              |||||||||||||||| | ||||||||||
Sbjct: 201531 ctccttccccacatcccttctctccatcc 201503

>gb|AF319535.1|AF319535 Neisseria meningitidis strain Z5035 PqiA (pqiA) gene, partial cds;
            HemO (hemO) and Exl3 (exl3) genes, complete cds; Col
            (col) gene, partial cds; and unknown genes
          Length = 7076

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 189  ggttgcaaggcgacgacccga 209
            |||||||||||||||||||||
Sbjct: 2055 ggttgcaaggcgacgacccga 2075

>gb|AF319533.1|AF319533 Neisseria meningitidis strain 6083 PqiA (pqiA) gene, partial cds;
            HemO (hemO) and Exl3 (exl3) genes, complete cds; and Col
            (col) gene, partial cds
          Length = 5909

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 189  ggttgcaaggcgacgacccga 209
            |||||||||||||||||||||
Sbjct: 2247 ggttgcaaggcgacgacccga 2267

>gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosome 16, complete
             sequence
          Length = 191617

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 242   tgggttggggagatggcttgg 262
             |||||||||||||||||||||
Sbjct: 99727 tgggttggggagatggcttgg 99747

>emb|AL935151.7| Mouse DNA sequence from clone RP23-193M4 on chromosome 2, complete
            sequence
          Length = 3994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 31   ctccttccccacatccatactctccatcc 59
            |||||||||||||||| | ||||||||||
Sbjct: 1989 ctccttccccacatcccttctctccatcc 1961

>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gggttggggagatggcttgg 262
             ||||||||||||||||||||
Sbjct: 71342 gggttggggagatggcttgg 71323

>gb|AC164119.4| Mus musculus BAC clone RP24-288I15 from chromosome 5, complete sequence
          Length = 189243

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gggttggggagatggcttgg 262
             ||||||||||||||||||||
Sbjct: 83238 gggttggggagatggcttgg 83219

>gb|AC163684.5| Mus musculus BAC clone RP23-8N10 from chromosome 13, complete
            sequence
          Length = 234717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  gggttggggagatggcttgg 262
            ||||||||||||||||||||
Sbjct: 9870 gggttggggagatggcttgg 9851

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     cggacgagaatgcgacgacg 147
               ||||||||||||||||||||
Sbjct: 1684656 cggacgagaatgcgacgacg 1684675

>gb|AC125377.5| Mus musculus BAC clone RP23-27C10 from chromosome 1, complete sequence
          Length = 227511

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   atgggttggggagatggctt 260
             ||||||||||||||||||||
Sbjct: 59303 atgggttggggagatggctt 59284

>gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosome 3, complete sequence
          Length = 225505

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    gggttggggagatggcttgg 262
              ||||||||||||||||||||
Sbjct: 121951 gggttggggagatggcttgg 121932

>ref|XM_950897.1| Neurospora crassa OR74A hypothetical protein (NCU01430.1) partial
            mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   acctctccttccccacatcc 46
            ||||||||||||||||||||
Sbjct: 1921 acctctccttccccacatcc 1902

>ref|XM_327868.1| Neurospora crassa OR74A hypothetical protein (NCU01430.1) partial
            mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   acctctccttccccacatcc 46
            ||||||||||||||||||||
Sbjct: 1921 acctctccttccccacatcc 1902

>gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence
          Length = 141881

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   agcctgttgtggctctattg 392
             ||||||||||||||||||||
Sbjct: 31339 agcctgttgtggctctattg 31320

>gb|AC126458.3| Mus musculus BAC clone RP23-154H24 from chromosome 2, complete sequence
          Length = 203687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 236   gcctcatgggttggggagatggct 259
             |||||||||| |||||||||||||
Sbjct: 28040 gcctcatgggctggggagatggct 28017

>gb|AC121934.4| Mus musculus BAC clone RP24-207A18 from chromosome 5, complete sequence
          Length = 152037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gggttggggagatggcttgg 262
             ||||||||||||||||||||
Sbjct: 94036 gggttggggagatggcttgg 94017

>ref|XM_812387.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508347.100) partial mRNA
          Length = 2025

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 168 cgacgacagtggggtgggcgaggttgca 195
           |||||||||||||||||| |||| ||||
Sbjct: 198 cgacgacagtggggtgggtgaggatgca 225

>emb|CR847496.7| Zebrafish DNA sequence from clone CH211-203D1 in linkage group 14,
              complete sequence
          Length = 157741

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    atgcagtattgtggttctga 432
              ||||||||||||||||||||
Sbjct: 110880 atgcagtattgtggttctga 110861

>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence
          Length = 187495

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   tacacatatatgggcaagaatgca 417
             |||||||||||| |||||||||||
Sbjct: 28526 tacacatatatgtgcaagaatgca 28549

>emb|BX294023.1|NCB20D17 Neurospora crassa DNA linkage group V BAC clone B20D17
          Length = 71593

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   acctctccttccccacatcc 46
            ||||||||||||||||||||
Sbjct: 2426 acctctccttccccacatcc 2445

>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tcgccgccataccgccaccc 83
              ||||||||||||||||||||
Sbjct: 569778 tcgccgccataccgccaccc 569797

>dbj|AK217977.1| Mus musculus cDNA, clone:Y2G0143J22, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000031383, based on BLAT search
          Length = 220

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 caggagaagctcgggggcct 239
           ||||||||||||||||||||
Sbjct: 5   caggagaagctcgggggcct 24

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 402     tatgggcaagaatgcagtat 421
               ||||||||||||||||||||
Sbjct: 1185058 tatgggcaagaatgcagtat 1185077

>emb|AL845275.20| Mouse DNA sequence from clone RP23-112F5 on chromosome 2, complete
              sequence
          Length = 227422

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 236    gcctcatgggttggggagatggct 259
              |||||||||| |||||||||||||
Sbjct: 137109 gcctcatgggctggggagatggct 137086

>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence
          Length = 191058

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   catgggttggggagatggct 259
             ||||||||||||||||||||
Sbjct: 69312 catgggttggggagatggct 69331

>emb|CR383665.9| Zebrafish DNA sequence from clone DKEY-3G23 in linkage group 14,
             complete sequence
          Length = 120923

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   atgcagtattgtggttctga 432
             ||||||||||||||||||||
Sbjct: 98327 atgcagtattgtggttctga 98346

>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    gggttggggagatggcttgg 262
              ||||||||||||||||||||
Sbjct: 173632 gggttggggagatggcttgg 173651

>gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, complete sequence
          Length = 209792

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    gggttggggagatggcttgg 262
              ||||||||||||||||||||
Sbjct: 170701 gggttggggagatggcttgg 170682

>emb|AL591762.13| Mouse DNA sequence from clone RP23-465I6 on chromosome 2, complete
              sequence
          Length = 137773

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    gggttggggagatggcttgg 262
              ||||||||||||||||||||
Sbjct: 109279 gggttggggagatggcttgg 109260


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,392,729
Number of Sequences: 3902068
Number of extensions: 3392729
Number of successful extensions: 66309
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66221
Number of HSP's gapped (non-prelim): 88
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)