ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189992.1| Oryza sativa (japonica cultivar-group), predic... 369 5e-99
2dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 5e-99
3dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response fact... 349 4e-93
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
6dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
7dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
8emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for a... 76 1e-10
9dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
10gb|AF140228.2| Oryza sativa (indica cultivar-group) putative aux... 70 6e-09
11gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds 64 4e-07
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 4e-07
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
15gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 64 4e-07
16gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genom... 64 4e-07
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
18emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa... 64 4e-07
19ref|NM_188673.1| Oryza sativa (japonica cultivar-group), Ozsa827... 60 6e-06
20gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
21gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
22gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
24dbj|AK102521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
25dbj|AK064007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
27dbj|AB071300.1| Oryza sativa OsARF16 mRNA for auxin response fac... 60 6e-06
28ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
29emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 58 2e-05
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
31dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
32emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 58 2e-05
33emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 58 2e-05
34dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response fact... 58 2e-05
35emb|AJ716227.1| Brassica napus mRNA for putative auxin response ... 52 0.001
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
37dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
38dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
39ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.022
40dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
41dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
42ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTO... 44 0.34
43ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTO... 44 0.34
44ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTO... 44 0.34
45gb|CP000097.1| Synechococcus sp. CC9902, complete genome 44 0.34
46gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, com... 44 0.34
47gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939)... 44 0.34
48dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
49dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
50dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
51dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
52dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
53dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding prote... 44 0.34
54gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 m... 44 0.34
55gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g6200... 44 0.34
56dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 44 0.34
57gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 42 1.4
58ref|XM_473206.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
59emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 42 1.4
60gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
61dbj|AK100795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
62emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
63emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
64gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.4
65gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
66ref|XM_958709.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.4
67ref|XM_324981.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.4
68gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.4
69emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 5.4
70dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
71gb|AE004480.1| Pseudomonas aeruginosa PAO1, section 41 of 529 of... 40 5.4
72dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.4
73dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
74dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN... 40 5.4 
>ref|NM_189992.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  369 bits (186), Expect = 5e-99
 Identities = 246/266 (92%)
 Strand = Plus / Plus

                                                                       
Query: 136 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 195
           ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||
Sbjct: 23  agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 82

                                                                       
Query: 196 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 255
           ||||||||||||||||||| || ||| | |||| ||||||||||||||| ||||||||||
Sbjct: 83  tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 142

                                                                       
Query: 256 aggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 315
           |||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct: 143 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 202

                                                                       
Query: 316 ccaagctgctctgccgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgagg 375
           |||||||||| ||||| |||||||||||||||||||||||||||   |||||||||||||
Sbjct: 203 ccaagctgctttgccgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgagg 262

                                     
Query: 376 tctacgcgcaggtcatgctcatgccg 401
           ||||||||||||||||||||||||||
Sbjct: 263 tctacgcgcaggtcatgctcatgccg 288
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>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full
           insert sequence
          Length = 3151

 Score =  369 bits (186), Expect = 5e-99
 Identities = 246/266 (92%)
 Strand = Plus / Plus

                                                                       
Query: 136 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 195
           ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||
Sbjct: 245 agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 304

                                                                       
Query: 196 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 255
           ||||||||||||||||||| || ||| | |||| ||||||||||||||| ||||||||||
Sbjct: 305 tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 364

                                                                       
Query: 256 aggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 315
           |||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct: 365 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 424

                                                                       
Query: 316 ccaagctgctctgccgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgagg 375
           |||||||||| ||||| |||||||||||||||||||||||||||   |||||||||||||
Sbjct: 425 ccaagctgctttgccgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgagg 484

                                     
Query: 376 tctacgcgcaggtcatgctcatgccg 401
           ||||||||||||||||||||||||||
Sbjct: 485 tctacgcgcaggtcatgctcatgccg 510
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>dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds
          Length = 2376

 Score =  349 bits (176), Expect = 4e-93
 Identities = 233/252 (92%)
 Strand = Plus / Plus

                                                                       
Query: 150 ggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgccg 209
           ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 1   ggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgccg 60

                                                                       
Query: 210 cgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctcc 269
           ||||| || ||| | |||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 61  cgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtcc 120

                                                                       
Query: 270 atgaaccaggtcgccgccaaccagatgcgcctctacgatctgccctccaagctgctctgc 329
           ||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 atgaaccaggttgccgacagccagatgcgcctctacgatctgccctccaagctgctttgc 180

                                                                       
Query: 330 cgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcaggtc 389
           || |||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 181 cgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgaggtctacgcgcaggtc 240

                       
Query: 390 atgctcatgccg 401
           ||||||||||||
Sbjct: 241 atgctcatgccg 252
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 5e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                            
Query: 254      gcaggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 313
                |||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 40688608 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 40688667

                                                         
Query: 314      ctccaagctgctctgccgcgtcctcaacgtcgagctcaagg 354
                |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 40688668 ctccaagctgctttgccgtgtcctcaacgtcgagctcaagg 40688708



 Score =  147 bits (74), Expect = 3e-32
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                            
Query: 148      caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 207
                ||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 40688393 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 40688452

                                                                      
Query: 208      cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtgg 261
                ||||||| || ||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 40688453 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtgg 40688506



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 363      gacaccgacgaggtctacgcgcaggtcatgctcatgccg 401
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 40688868 gacaccgacgaggtctacgcgcaggtcatgctcatgccg 40688906
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>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0093F16
          Length = 160925

 Score =  153 bits (77), Expect = 5e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                          
Query: 254    gcaggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 313
              |||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 130586 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 130645

                                                       
Query: 314    ctccaagctgctctgccgcgtcctcaacgtcgagctcaagg 354
              |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 130646 ctccaagctgctttgccgtgtcctcaacgtcgagctcaagg 130686



 Score =  147 bits (74), Expect = 3e-32
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                          
Query: 148    caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 207
              ||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 130371 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 130430

                                                                    
Query: 208    cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtgg 261
              ||||||| || ||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 130431 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtgg 130484



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                     
Query: 363    gacaccgacgaggtctacgcgcaggtcatgctcatgccg 401
              |||||||||||||||||||||||||||||||||||||||
Sbjct: 130846 gacaccgacgaggtctacgcgcaggtcatgctcatgccg 130884
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>dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D19, full
           insert sequence
          Length = 3265

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 213 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctccatg 272
           |||||||| | ||||| |||| ||||||||||||||||||||||||||||||| || | |
Sbjct: 428 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 487

                        
Query: 273 aaccaggtcgccg 285
           |||||||||||||
Sbjct: 488 aaccaggtcgccg 500
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>dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J11, full
           insert sequence
          Length = 3100

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 213 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctccatg 272
           |||||||| | ||||| |||| ||||||||||||||||||||||||||||||| || | |
Sbjct: 279 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 338

                        
Query: 273 aaccaggtcgccg 285
           |||||||||||||
Sbjct: 339 aaccaggtcgccg 351
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>emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1
           gene)
          Length = 2511

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
           ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 85  tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 144

                                     
Query: 243 ggccacatcgagcaggtggaggcctc 268
           || |||||||||||||||||||||||
Sbjct: 145 gggcacatcgagcaggtggaggcctc 170
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>dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A03, full
           insert sequence
          Length = 3338

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
           ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 367 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 426

                                     
Query: 243 ggccacatcgagcaggtggaggcctc 268
           || |||||||||||||||||||||||
Sbjct: 427 gggcacatcgagcaggtggaggcctc 452
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>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor
           1 mRNA, partial cds
          Length = 2574

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 230 ctacttcccgcagggccacatcgagcaggtggaggcctc 268
           ||||||||||||||| |||||||||||||||||||||||
Sbjct: 180 ctacttcccgcaggggcacatcgagcaggtggaggcctc 218
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>gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds
          Length = 1108

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 230 ctacttcccgcagggccacatcgagcaggtggaggcctccatgaaccaggtcgccg 285
           ||||||||| ||||| |||||||||||||| ||||| || | ||||||||||||||
Sbjct: 156 ctacttccctcaggggcacatcgagcaggtcgaggcgtcgacgaaccaggtcgccg 211
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%), Gaps = 5/68 (7%)
 Strand = Plus / Plus

                                                                            
Query: 287      caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 346
                |||||||||||||||||||||||||||     | ||||||||| | ||||||||||| ||
Sbjct: 33117211 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 33117265

                        
Query: 347      gctcaagg 354
                ||||||||
Sbjct: 33117266 gctcaagg 33117273
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 213      gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 260
                |||||||| | ||||| |||| ||||||||||||||||||||||||||
Sbjct: 17618225 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 17618178
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%), Gaps = 5/68 (7%)
 Strand = Plus / Plus

                                                                            
Query: 287      caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 346
                |||||||||||||||||||||||||||     | ||||||||| | ||||||||||| ||
Sbjct: 33207721 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 33207775

                        
Query: 347      gctcaagg 354
                ||||||||
Sbjct: 33207776 gctcaagg 33207783



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 356      ggaggcggacaccgacgaggt 376
                |||||||||||||||||||||
Sbjct: 24765551 ggaggcggacaccgacgaggt 24765571
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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
              sequence
          Length = 144487

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%), Gaps = 5/68 (7%)
 Strand = Plus / Minus

                                                                          
Query: 287    caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 346
              |||||||||||||||||||||||||||     | ||||||||| | ||||||||||| ||
Sbjct: 127344 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 127290

                      
Query: 347    gctcaagg 354
              ||||||||
Sbjct: 127289 gctcaagg 127282
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>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence,
            complete sequence
          Length = 139823

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%), Gaps = 5/68 (7%)
 Strand = Plus / Minus

                                                                        
Query: 287  caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 346
            |||||||||||||||||||||||||||     | ||||||||| | ||||||||||| ||
Sbjct: 6097 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 6043

                    
Query: 347  gctcaagg 354
            ||||||||
Sbjct: 6042 gctcaagg 6035
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 213      gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 260
                |||||||| | ||||| |||| ||||||||||||||||||||||||||
Sbjct: 17572596 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 17572549
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>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 162200

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 213    gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 260
              |||||||| | ||||| |||| ||||||||||||||||||||||||||
Sbjct: 110561 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 110514
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>ref|NM_188673.1| Oryza sativa (japonica cultivar-group), Ozsa8276 predicted mRNA
          Length = 1842

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 337 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 386
           ||||||||||||||||||| ||| |||| ||||||||||| | |||||||
Sbjct: 224 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 273
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>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08,
              complete sequence
          Length = 136853

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                          
Query: 183    tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
              ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 133893 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 133834

                                
Query: 243    ggccacatcgagcaggtg 260
              || |||||||||||||||
Sbjct: 133833 gggcacatcgagcaggtg 133816
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>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056I10, complete sequence
          Length = 158833

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 183   tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
             ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 10662 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 10603

                               
Query: 243   ggccacatcgagcaggtg 260
             || |||||||||||||||
Sbjct: 10602 gggcacatcgagcaggtg 10585
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>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09,
             complete sequence
          Length = 43883

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 183   tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
             ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 42556 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 42497

                               
Query: 243   ggccacatcgagcaggtg 260
             || |||||||||||||||
Sbjct: 42496 gggcacatcgagcaggtg 42479
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                            
Query: 183      tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
                ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 18275297 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18275238

                                  
Query: 243      ggccacatcgagcaggtg 260
                || |||||||||||||||
Sbjct: 18275237 gggcacatcgagcaggtg 18275220
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>dbj|AK102521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095P08, full
           insert sequence
          Length = 2538

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 337 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 386
           ||||||||||||||||||| ||| |||| ||||||||||| | |||||||
Sbjct: 289 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 338
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>dbj|AK064007.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G08, full
           insert sequence
          Length = 2518

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 337 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 386
           ||||||||||||||||||| ||| |||| ||||||||||| | |||||||
Sbjct: 256 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 305
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                            
Query: 183      tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 242
                ||||| || ||||| || || |||||| |||| ||||| | ||| | |||||||||||||
Sbjct: 18434577 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18434518

                                  
Query: 243      ggccacatcgagcaggtg 260
                || |||||||||||||||
Sbjct: 18434517 gggcacatcgagcaggtg 18434500
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>dbj|AB071300.1| Oryza sativa OsARF16 mRNA for auxin response factor 16, partial cds
          Length = 2088

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 337 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 386
           ||||||||||||||||||| ||| |||| ||||||||||| | |||||||
Sbjct: 212 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 261
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>ref|XM_474307.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2457

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 168 gagctctggcacgcctgcgccggcccgctcgtc 200
           ||||| |||||||||||||||||||||||||||
Sbjct: 91  gagctatggcacgcctgcgccggcccgctcgtc 123



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 230 ctacttcccgcagggccacatcgagcaggtgg 261
           |||||||||||| ||||||| |||||||||||
Sbjct: 153 ctacttcccgcaaggccacagcgagcaggtgg 184
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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 168   gagctctggcacgcctgcgccggcccgctcgtc 200
             ||||| |||||||||||||||||||||||||||
Sbjct: 43419 gagctatggcacgcctgcgccggcccgctcgtc 43387



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 230   ctacttcccgcagggccacatcgagcaggtg 260
             |||||||||||| ||||||| ||||||||||
Sbjct: 43357 ctacttcccgcaaggccacagcgagcaggtg 43327
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 168      gagctctggcacgcctgcgccggcccgctcgtc 200
                ||||| |||||||||||||||||||||||||||
Sbjct: 34319016 gagctatggcacgcctgcgccggcccgctcgtc 34318984



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 230      ctacttcccgcagggccacatcgagcaggtg 260
                |||||||||||| ||||||| ||||||||||
Sbjct: 34318954 ctacttcccgcaaggccacagcgagcaggtg 34318924



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 228      tactacttcccgcagggccac 248
                |||||||||||||||||||||
Sbjct: 25986973 tactacttcccgcagggccac 25986993
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>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full
           insert sequence
          Length = 3262

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 168 gagctctggcacgcctgcgccggcccgctcgtc 200
           ||||| |||||||||||||||||||||||||||
Sbjct: 426 gagctatggcacgcctgcgccggcccgctcgtc 458



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 230 ctacttcccgcagggccacatcgagcaggtgg 261
           |||||||||||| ||||||| |||||||||||
Sbjct: 488 ctacttcccgcaaggccacagcgagcaggtgg 519
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 168   gagctctggcacgcctgcgccggcccgctcgtc 200
             ||||| |||||||||||||||||||||||||||
Sbjct: 91307 gagctatggcacgcctgcgccggcccgctcgtc 91275



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 230   ctacttcccgcagggccacatcgagcaggtg 260
             |||||||||||| ||||||| ||||||||||
Sbjct: 91245 ctacttcccgcaaggccacagcgagcaggtg 91215
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>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete
            sequence
          Length = 100419

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 168  gagctctggcacgcctgcgccggcccgctcgtc 200
            ||||| |||||||||||||||||||||||||||
Sbjct: 4172 gagctatggcacgcctgcgccggcccgctcgtc 4140



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 230  ctacttcccgcagggccacatcgagcaggtg 260
            |||||||||||| ||||||| ||||||||||
Sbjct: 4110 ctacttcccgcaaggccacagcgagcaggtg 4080
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>dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds
          Length = 2388

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 168 gagctctggcacgcctgcgccggcccgctcgtc 200
           ||||| |||||||||||||||||||||||||||
Sbjct: 22  gagctatggcacgcctgcgccggcccgctcgtc 54



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 230 ctacttcccgcagggccacatcgagcaggtgg 261
           |||||||||||| ||||||| |||||||||||
Sbjct: 84  ctacttcccgcaaggccacagcgagcaggtgg 115
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>emb|AJ716227.1| Brassica napus mRNA for putative auxin response factor (ARF2 gene)
          Length = 2547

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 225 gtctactacttcccgcagggccacatcgagcaggtgga 262
           |||| ||||||||| ||||| |||||||||||||||||
Sbjct: 223 gtcttctacttccctcaggggcacatcgagcaggtgga 260
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 168      gagctctggcacgcctgcgccggcccgctcgtc 200
                |||||||||||||||||| || |||||||||||
Sbjct: 28541929 gagctctggcacgcctgctccagcccgctcgtc 28541961



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                           
Query: 168     gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 227
               ||||| |||||||| |||||||||||||||||  |  |||||| ||| ||   | | |||
Sbjct: 2214437 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 2214378

                                               
Query: 228     tactacttcccgcagggccacatcgagcaggt 259
                 |||||||||||| ||||||| |||||||||
Sbjct: 2214377 gtctacttcccgcaaggccacagcgagcaggt 2214346



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 230      ctacttcccgcagggccacatcgagcaggtg 260
                |||||||||||| ||||||| ||||||||||
Sbjct: 28541991 ctacttcccgcaaggccacagcgagcaggtg 28542021
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>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:B1053A04
          Length = 144321

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 168  gagctctggcacgcctgcgccggcccgctcgtc 200
            |||||||||||||||||| || |||||||||||
Sbjct: 5942 gagctctggcacgcctgctccagcccgctcgtc 5974



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 230  ctacttcccgcagggccacatcgagcaggtg 260
            |||||||||||| ||||||| ||||||||||
Sbjct: 6004 ctacttcccgcaaggccacagcgagcaggtg 6034
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>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017H11
          Length = 158374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 168    gagctctggcacgcctgcgccggcccgctcgtc 200
              |||||||||||||||||| || |||||||||||
Sbjct: 110770 gagctctggcacgcctgctccagcccgctcgtc 110802



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 230    ctacttcccgcagggccacatcgagcaggtg 260
              |||||||||||| ||||||| ||||||||||
Sbjct: 110832 ctacttcccgcaaggccacagcgagcaggtg 110862
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>ref|XM_464101.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3420

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 227
           ||||| |||||||| |||||||||||||||||  |  |||||| ||| ||   | | |||
Sbjct: 121 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 180

                                           
Query: 228 tactacttcccgcagggccacatcgagcaggt 259
             |||||||||||| ||||||| |||||||||
Sbjct: 181 gtctacttcccgcaaggccacagcgagcaggt 212
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>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1123_E07
          Length = 113187

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 168  gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 227
            ||||| |||||||| |||||||||||||||||  |  |||||| ||| ||   | | |||
Sbjct: 1386 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 1327

                                            
Query: 228  tactacttcccgcagggccacatcgagcaggt 259
              |||||||||||| ||||||| |||||||||
Sbjct: 1326 gtctacttcccgcaaggccacagcgagcaggt 1295
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                          
Query: 168    gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 227
              ||||| |||||||| |||||||||||||||||  |  |||||| ||| ||   | | |||
Sbjct: 129130 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 129071

                                              
Query: 228    tactacttcccgcagggccacatcgagcaggt 259
                |||||||||||| ||||||| |||||||||
Sbjct: 129070 gtctacttcccgcaaggccacagcgagcaggt 129039
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>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
           factor AT5G62000 (ARF2) transcript variant AT5G62000.2
           mRNA, complete cds
          Length = 3384

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 634 cacatcgagcaggtggaggcttcgacgaaccagg 667
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>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000
           (ARF2) transcript variant AT5G62000.3 mRNA, complete cds
          Length = 3387

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 634 cacatcgagcaggtggaggcttcgacgaaccagg 667
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>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
           factor AT5G62000 (ARF2) transcript variant AT5G62000.1
           mRNA, complete cds
          Length = 3513

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 760 cacatcgagcaggtggaggcttcgacgaaccagg 793
to top
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 335     cctcaacgtcgagctcaaggcg 356
               ||||||||||||||||||||||
Sbjct: 1702923 cctcaacgtcgagctcaaggcg 1702902
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>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
          Length = 2037

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 259 cacatcgagcaggtggaggcttcgacgaaccagg 292
to top
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
           factor (At5g62000) mRNA, complete cds
          Length = 3498

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 760 cacatcgagcaggtggaggcttcgacgaaccagg 793
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>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-31-F22
          Length = 3335

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 568 cacatcgagcaggtggaggcttcgacgaaccagg 601
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>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-19-K22
          Length = 3275

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 547 cacatcgagcaggtggaggcttcgacgaaccagg 580
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>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-18-M11
          Length = 3316

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 549 cacatcgagcaggtggaggcttcgacgaaccagg 582
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>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-16-M02
          Length = 3317

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
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>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-09-L23
          Length = 3317

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
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>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
           clone: RAFL24-07-O11
          Length = 3317

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
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>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
          Length = 3171

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 599 cacatcgagcaggtggaggcttcgacgaaccagg 632
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>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
           cds
          Length = 2772

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 246 cacatcgagcaggtggaggcctccatgaaccagg 279
           |||||||||||||||||||| || | ||||||||
Sbjct: 259 cacatcgagcaggtggaggcttcgacgaaccagg 292
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 158    gctgtacgacgagctctggcacgcct 183
              ||||||||||||||||||||| ||||
Sbjct: 542525 gctgtacgacgagctctggcaggcct 542550
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>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 3 (NCED3) mRNA, complete cds
          Length = 2060

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 356  ggaggcggacaccgacgaggt 376
            |||||||||||||||||||||
Sbjct: 1439 ggaggcggacaccgacgaggt 1459
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>ref|XM_473206.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2088

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 tactacttcccgcagggccac 248
           |||||||||||||||||||||
Sbjct: 112 tactacttcccgcagggccac 132
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    ggaggcggacaccgacgaggt 376
              |||||||||||||||||||||
Sbjct: 144240 ggaggcggacaccgacgaggt 144260
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 188    cggcccgctcgtcaccgtgccgcgg 212
              ||||||| |||||||||||||||||
Sbjct: 962603 cggcccgatcgtcaccgtgccgcgg 962627
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>dbj|AK100795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F07, full
           insert sequence
          Length = 2826

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 tactacttcccgcagggccac 248
           |||||||||||||||||||||
Sbjct: 168 tactacttcccgcagggccac 188
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   tactacttcccgcagggccac 248
             |||||||||||||||||||||
Sbjct: 21300 tactacttcccgcagggccac 21320
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>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
              complete sequence
          Length = 139226

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    tactacttcccgcagggccac 248
              |||||||||||||||||||||
Sbjct: 113235 tactacttcccgcagggccac 113255
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 324    ctctgccgcgtcctcaacgtcgagctcaa 352
              |||| ||| ||||||||||||||||||||
Sbjct: 635589 ctcttccgggtcctcaacgtcgagctcaa 635617
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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0053D02, complete sequence
          Length = 157106

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   cgagctctggcacgcctgcgccgg 190
             |||||| |||||||||||||||||
Sbjct: 44804 cgagctgtggcacgcctgcgccgg 44827
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>ref|XM_958709.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial
           mRNA
          Length = 1716

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ctggcacgcctgcgccggcc 192
           ||||||||||||||||||||
Sbjct: 51  ctggcacgcctgcgccggcc 32
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>ref|XM_324981.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial
           mRNA
          Length = 1716

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ctggcacgcctgcgccggcc 192
           ||||||||||||||||||||
Sbjct: 51  ctggcacgcctgcgccggcc 32
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 194     gctcgtcaccgtgccgcgggtcgg 217
               |||||||||||||| |||||||||
Sbjct: 1733792 gctcgtcaccgtgcggcgggtcgg 1733769
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 186     gccggcccgctcgtcaccgtgccg 209
               |||||||||||| |||||||||||
Sbjct: 1559767 gccggcccgctcttcaccgtgccg 1559744
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 167      cgagctctggcacgcctgcgccgg 190
                |||||| |||||||||||||||||
Sbjct: 27814387 cgagctgtggcacgcctgcgccgg 27814410
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>gb|AE004480.1| Pseudomonas aeruginosa PAO1, section 41 of 529 of the complete genome
          Length = 10910

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 365  caccgacgaggtctacgcgc 384
            ||||||||||||||||||||
Sbjct: 9253 caccgacgaggtctacgcgc 9272
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 345    gagctcaaggcggaggcggacacc 368
              |||||||||||||||| |||||||
Sbjct: 847583 gagctcaaggcggaggtggacacc 847606
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>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full
           insert sequence
          Length = 2712

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 cgagctctggcacgcctgcgccgg 190
           |||||| |||||||||||||||||
Sbjct: 335 cgagctgtggcacgcctgcgccgg 358
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>dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1,
           complete cds
          Length = 2622

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 cgagctctggcacgcctgcgccgg 190
           |||||| |||||||||||||||||
Sbjct: 227 cgagctgtggcacgcctgcgccgg 250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,475,656
Number of Sequences: 3902068
Number of extensions: 1475656
Number of successful extensions: 27886
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27307
Number of HSP's gapped (non-prelim): 579
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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