ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl54f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0047D03, complete sequence Length = 126165 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 386 tgcagcctgaagcacaagcgcagggttacagtgcttaacctcacctcggagggcct 441 |||||||| ||||| || | |||||| ||||||||||||||| |||| ||| |||| Sbjct: 78811 tgcagccttaagcataaacacagggtcacagtgcttaacctctcctcagagagcct 78866
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 386 tgcagcctgaagcacaagcgcagggttacagtgcttaacctcacctcggagggcct 441 |||||||| ||||| || | |||||| ||||||||||||||| |||| ||| |||| Sbjct: 13312 tgcagccttaagcataaacacagggtcacagtgcttaacctctcctcagagagcct 13367
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 386 tgcagcctgaagcacaagcgcagggttacagtgcttaacctcacctcggagggcct 441 |||||||| ||||| || | |||||| ||||||||||||||| |||| ||| |||| Sbjct: 16697697 tgcagccttaagcataaacacagggtcacagtgcttaacctctcctcagagagcct 16697752
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 386 tgcagcctgaagcacaagcgcagggttacagtgcttaacctcacctcggagggcct 441 |||||||| ||||| || | |||||| ||||||||||||||| |||| ||| |||| Sbjct: 16791520 tgcagccttaagcataaacacagggtcacagtgcttaacctctcctcagagagcct 16791575
>ref|XM_477951.1| Oryza sativa (japonica cultivar-group), mRNA Length = 897 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgccg 110 ||||||||||||||||||||||| Sbjct: 538 tccgagcccctccgccgccgccg 560
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgccg 110 ||||||||||||||||||||||| Sbjct: 15851969 tccgagcccctccgccgccgccg 15851991 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 ccgccgccgccggcccttcttctc 122 ||||||||||||||||| |||||| Sbjct: 17397162 ccgccgccgccggccctccttctc 17397139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgccg 110 ||||||||||||||||||||||| Sbjct: 6549165 tccgagcccctccgccgccgccg 6549187
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgccg 110 ||||||||||||||||||||||| Sbjct: 91483 tccgagcccctccgccgccgccg 91505
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgccg 110 ||||||||||||||||||||||| Sbjct: 109778 tccgagcccctccgccgccgccg 109800
>gb|AC153645.4| Mus musculus BAC clone RP24-534E8 from chromosome 13, complete sequence Length = 182805 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 aggtatcacctgcagcctgaagcaca 401 |||||||||||||||||||| ||||| Sbjct: 135709 aggtatcacctgcagcctgaggcaca 135734
>gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosome 13, complete sequence Length = 166185 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 aggtatcacctgcagcctgaagcaca 401 |||||||||||||||||||| ||||| Sbjct: 21854 aggtatcacctgcagcctgaggcaca 21879
>dbj|AK028988.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732479B03 product:hypothetical protein, full insert sequence Length = 3151 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 aggtatcacctgcagcctgaagcaca 401 |||||||||||||||||||| ||||| Sbjct: 2103 aggtatcacctgcagcctgaggcaca 2128
>emb|AL928654.1|CNS08CBD Human chromosome 14 DNA sequence BAC R-521B24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 211509 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gcccctccgccgccgccggccc 114 |||||||||||||||||||||| Sbjct: 98428 gcccctccgccgccgccggccc 98449
>ref|NM_204490.1| Gallus gallus heparan sulfate 6-O-sulfotransferase 2 (HS6ST2), mRNA Length = 1638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggcc 113 ||||||||||||||||||||| Sbjct: 34 gcccctccgccgccgccggcc 14
>gb|AC090681.13| Homo sapiens 12 BAC RP11-369C14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 93582 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 cccctccgccgccgccggccc 114 ||||||||||||||||||||| Sbjct: 65472 cccctccgccgccgccggccc 65452
>gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, complete sequence Length = 212031 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaacacaaccactgctttc 364 ||||||||||||||||||||| Sbjct: 64311 tggaacacaaccactgctttc 64291
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 tccgagcccctccgccgccgc 108 ||||||||||||||||||||| Sbjct: 13582536 tccgagcccctccgccgccgc 13582516
>dbj|AB071190.1| Gallus gallus Hs6st-2 mRNA for heparan sulfate 6-O-sulfotransferase-2, complete cds Length = 1638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggcc 113 ||||||||||||||||||||| Sbjct: 34 gcccctccgccgccgccggcc 14
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 tccgagcccctccgccgccgc 108 ||||||||||||||||||||| Sbjct: 13536810 tccgagcccctccgccgccgc 13536790
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgc 108 ||||||||||||||||||||| Sbjct: 2703 tccgagcccctccgccgccgc 2723
>emb|AL713929.5|CNS07YP6 Oryza sativa chromosome 12, . BAC OSJNBb0029H23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119798 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 tccgagcccctccgccgccgc 108 ||||||||||||||||||||| Sbjct: 114688 tccgagcccctccgccgccgc 114708
>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence Length = 175110 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 tccagctcccggcccctactc 190 ||||||||||||||||||||| Sbjct: 38845 tccagctcccggcccctactc 38865
>emb|AL731832.13| Mouse DNA sequence from clone RP23-180N10 on chromosome X, complete sequence Length = 144400 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaacacaaccactgctttc 364 ||||||||||||||||||||| Sbjct: 83550 tggaacacaaccactgctttc 83530
>ref|NM_187313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 447 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 ccgccgccgccggcccttcttctc 122 ||||||||||||||||| |||||| Sbjct: 212 ccgccgccgccggccctccttctc 189
>gb|AF377694.1| Tripsacum dactyloides globulin 1 gene, partial cds Length = 1063 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 gccgccgccggcccttcttctcct 124 ||||||||||| |||||||||||| Sbjct: 481 gccgccgccggtccttcttctcct 458
>gb|AC122226.3| Mus musculus BAC clone RP23-131F7 from 5, complete sequence Length = 193861 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cccctccgccgccgccggcc 113 |||||||||||||||||||| Sbjct: 18643 cccctccgccgccgccggcc 18624
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aaccactgctttctgctcgt 371 |||||||||||||||||||| Sbjct: 809587 aaccactgctttctgctcgt 809568
>emb|AJ719919.1| Gallus gallus mRNA for hypothetical protein, clone 8d24 Length = 4509 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cccctccgccgccgccggcccttc 117 ||||||||||||||||| |||||| Sbjct: 173 cccctccgccgccgccgccccttc 196
>emb|AJ719819.1| Gallus gallus mRNA for hypothetical protein, clone 6n13 Length = 3090 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cccctccgccgccgccggcccttc 117 ||||||||||||||||| |||||| Sbjct: 173 cccctccgccgccgccgccccttc 196
>ref|NM_001012835.1| Gallus gallus guanine nucleotide binding protein (G protein), beta polypeptide 1 (GNB1), mRNA Length = 4509 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cccctccgccgccgccggcccttc 117 ||||||||||||||||| |||||| Sbjct: 173 cccctccgccgccgccgccccttc 196
>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188768 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 cttcaaggcaagcctgagcgacca 324 ||||||||||||||||||| |||| Sbjct: 53067 cttcaaggcaagcctgagctacca 53090
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggc 112 |||||||||||||||||||| Sbjct: 20256601 gcccctccgccgccgccggc 20256582
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcccctccgccgccgccggcccttcttc 120 ||||| |||||||||||| ||||||||| Sbjct: 28691753 gccccgccgccgccgccgccccttcttc 28691780
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cccctccgccgccgccggcc 113 |||||||||||||||||||| Sbjct: 33813 cccctccgccgccgccggcc 33832
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 ccgccgccgccggcccttcttctc 122 ||||||||||||||||| |||||| Sbjct: 65386 ccgccgccgccggccctccttctc 65363
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcccctccgccgccgccggcccttcttc 120 ||||| |||||||||||| ||||||||| Sbjct: 92319 gccccgccgccgccgccgccccttcttc 92346
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggc 112 |||||||||||||||||||| Sbjct: 35728 gcccctccgccgccgccggc 35709
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggc 112 |||||||||||||||||||| Sbjct: 150101 gcccctccgccgccgccggc 150082
>dbj|AK109450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F08, full insert sequence Length = 1535 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggcccttcttc 120 ||||| |||||||||||| ||||||||| Sbjct: 533 gccccgccgccgccgccgccccttcttc 506
>dbj|AK107266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H06, full insert sequence Length = 1836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cgctcaaggctgtgcgcacg 166 |||||||||||||||||||| Sbjct: 648 cgctcaaggctgtgcgcacg 667
>dbj|AK064089.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D02, full insert sequence Length = 1276 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 gcccctccgccgccgccggcccttcttc 120 ||||| |||||||||||| ||||||||| Sbjct: 274 gccccgccgccgccgccgccccttcttc 247
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 acgataagtccgacggcgat 289 |||||||||||||||||||| Sbjct: 1665637 acgataagtccgacggcgat 1665618
>gb|AF064235.1|AF064235 Tripsacum dactyloides line 2065 globulin-1 gene, allele b, partial cds Length = 1139 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 gccgccgccggcccttcttctcct 124 ||||||||||| |||||||||||| Sbjct: 522 gccgccgccggtccttcttctcct 499
>gb|AF064234.1|AF064234 Tripsacum dactyloides line 2065 globulin-1 gene, allele a, partial cds Length = 1132 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 gccgccgccggcccttcttctcct 124 ||||||||||| |||||||||||| Sbjct: 515 gccgccgccggtccttcttctcct 492
>gb|AF064233.1|AF064233 Tripsacum dactyloides line 2061 globulin-1 gene, partial cds Length = 1104 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 gccgccgccggcccttcttctcct 124 ||||||||||| |||||||||||| Sbjct: 515 gccgccgccggtccttcttctcct 492
>emb|AL929025.14| Mouse DNA sequence from clone RP23-288B11 on chromosome 2, complete sequence Length = 81735 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 gtggaacacaaccactgctttctg 366 ||||||||||||||||| |||||| Sbjct: 78786 gtggaacacaaccactgttttctg 78763
>emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chromosome 2, complete sequence Length = 251814 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 cacctgcagcctgaagcaca 401 |||||||||||||||||||| Sbjct: 110204 cacctgcagcctgaagcaca 110185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,608,556 Number of Sequences: 3902068 Number of extensions: 3608556 Number of successful extensions: 98352 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97347 Number of HSP's gapped (non-prelim): 1005 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
