ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_612728.2| PREDICTED: Bos taurus L-arginine:glycine amidin... 42 1.4
2ref|XM_871506.1| PREDICTED: Bos taurus L-arginine:glycine amidin... 42 1.4
3gb|AY625263.1| Bos taurus l-arginine:glycine amidinotransferase ... 42 1.4
4gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosom... 42 1.4
5gb|BC113272.1| Bos taurus L-arginine:glycine amidinotransferase,... 42 1.4
6gb|DQ455294.1| Medicago truncatula cDNA-AFLP fragment BT11M44_22... 42 1.4
7gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete se... 42 1.4
8gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-2... 42 1.4
9emb|AL512362.4|CNS07EFB Human chromosome 14 DNA sequence BAC R-7... 42 1.4
10emb|BX927359.1| Human chromosome 14 DNA sequence BAC R-614O9 of ... 42 1.4
11ref|NM_208520.1| Eremothecium gossypii ABR218Cp (ABR218C), mRNA 42 1.4
12gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.4
13ref|XM_471037.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
14gb|AF451898.1| Heliothis zea virus 1, complete genome 40 5.7
15emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, ... 40 5.7
16dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 5.7
17gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosom... 40 5.7
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
19emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
20emb|CR626857.1| Rice Cluster I (RC-I), uncultured archeon clone ... 40 5.7
21gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, compl... 40 5.7

>ref|XM_612728.2| PREDICTED: Bos taurus L-arginine:glycine amidinotransferase,
           transcript variant 1 (GATM), mRNA
          Length = 2285

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 ttgcaaaaggctgttgctgaa 370
           |||||||||||||||||||||
Sbjct: 442 ttgcaaaaggctgttgctgaa 462



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>ref|XM_871506.1| PREDICTED: Bos taurus L-arginine:glycine amidinotransferase,
           transcript variant 2 (GATM), mRNA
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 ttgcaaaaggctgttgctgaa 370
           |||||||||||||||||||||
Sbjct: 419 ttgcaaaaggctgttgctgaa 439



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>gb|AY625263.1| Bos taurus l-arginine:glycine amidinotransferase mRNA, partial cds
          Length = 979

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 ttgcaaaaggctgttgctgaa 370
           |||||||||||||||||||||
Sbjct: 111 ttgcaaaaggctgttgctgaa 131



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>gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosome 10, complete
             sequence
          Length = 200997

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 188   agcaaacaactacaaagcatctact 212
             |||||||||||||| ||||||||||
Sbjct: 89812 agcaaacaactacagagcatctact 89836



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>gb|BC113272.1| Bos taurus L-arginine:glycine amidinotransferase, transcript
           variant 1, mRNA (cDNA clone MGC:137972 IMAGE:8080188),
           complete cds
          Length = 2337

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 ttgcaaaaggctgttgctgaa 370
           |||||||||||||||||||||
Sbjct: 471 ttgcaaaaggctgttgctgaa 491



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>gb|DQ455294.1| Medicago truncatula cDNA-AFLP fragment BT11M44_227 sequence
          Length = 481

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 346 ggccttgcaaaaggctgttgc 366
           |||||||||||||||||||||
Sbjct: 197 ggccttgcaaaaggctgttgc 217



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>gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete sequence
          Length = 97953

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   ggccttgcaaaaggctgttgc 366
             |||||||||||||||||||||
Sbjct: 71881 ggccttgcaaaaggctgttgc 71861



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>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence
          Length = 124676

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   ggccttgcaaaaggctgttgc 366
             |||||||||||||||||||||
Sbjct: 83170 ggccttgcaaaaggctgttgc 83150



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>emb|AL512362.4|CNS07EFB Human chromosome 14 DNA sequence BAC R-716K17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168744

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    acaaggtgctccatgttgatt 323
              |||||||||||||||||||||
Sbjct: 111641 acaaggtgctccatgttgatt 111661



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>emb|BX927359.1| Human chromosome 14 DNA sequence BAC R-614O9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173641

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   acaaggtgctccatgttgatt 323
             |||||||||||||||||||||
Sbjct: 68668 acaaggtgctccatgttgatt 68648



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>ref|NM_208520.1| Eremothecium gossypii ABR218Cp (ABR218C), mRNA
          Length = 2124

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 136  agataccattgacgctgctgc 156
            |||||||||||||||||||||
Sbjct: 1281 agataccattgacgctgctgc 1261



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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    agataccattgacgctgctgc 156
              |||||||||||||||||||||
Sbjct: 813221 agataccattgacgctgctgc 813241



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>ref|XM_471037.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3474

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 371 gagctagagcttccccagtcggtgatggccat 402
           ||||| |||||||| | |||||||||||||||
Sbjct: 487 gagctggagcttcctcggtcggtgatggccat 518



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>gb|AF451898.1| Heliothis zea virus 1, complete genome
          Length = 228089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    tcggtgatggccatcttcat 408
              ||||||||||||||||||||
Sbjct: 110688 tcggtgatggccatcttcat 110669



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>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence
          Length = 211060

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    tcaagaaatgaaatttgaca 305
              ||||||||||||||||||||
Sbjct: 176355 tcaagaaatgaaatttgaca 176336



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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     aaggctgttgctgaagagct 375
               ||||||||||||||||||||
Sbjct: 1570151 aaggctgttgctgaagagct 1570170



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>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete
             sequence
          Length = 226870

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aatgaacctggagattgttt 100
             ||||||||||||||||||||
Sbjct: 87811 aatgaacctggagattgttt 87830



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 371    gagctagagcttccccagtcggtgatggccat 402
              ||||| |||||||| | |||||||||||||||
Sbjct: 916838 gagctggagcttcctcggtcggtgatggccat 916807



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>emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L13,
              complete sequence
          Length = 143386

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 371    gagctagagcttccccagtcggtgatggccat 402
              ||||| |||||||| | |||||||||||||||
Sbjct: 137499 gagctggagcttcctcggtcggtgatggccat 137468



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>emb|CR626857.1| Rice Cluster I (RC-I), uncultured archeon clone 3D10 complete
            sequence
          Length = 36858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  agagcttccccagtcggtga 395
            ||||||||||||||||||||
Sbjct: 7399 agagcttccccagtcggtga 7380



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>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence
          Length = 200615

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     aatgaacctggagattgttt 100
              ||||||||||||||||||||
Sbjct: 123441 aatgaacctggagattgttt 123460


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,988,051
Number of Sequences: 3902068
Number of extensions: 3988051
Number of successful extensions: 70833
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70776
Number of HSP's gapped (non-prelim): 57
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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