ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493885.1| Oryza sativa (japonica cultivar-group), predic... 404 e-109
2dbj|AK066175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 404 e-109
3gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 236 5e-59
4gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,... 236 5e-59
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 236 5e-59
6gb|AY106861.1| Zea mays PCO095924 mRNA sequence 121 2e-24
7dbj|AK060179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
8ref|XM_705964.1| Candida albicans SC5314 hypothetical protein (C... 50 0.007
9ref|XM_705951.1| Candida albicans SC5314 putative RNA helicase (... 50 0.007
10ref|XM_704987.1| Candida albicans SC5314 hypothetical protein (C... 50 0.007
11gb|AC153589.2| Mus musculus 6 BAC RP23-89P21 (Roswell Park Cance... 50 0.007
12gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cance... 50 0.007
13emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encep... 44 0.41
14gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 1.6
15gb|AC008664.6| Homo sapiens chromosome 5 clone CTB-34B5, complet... 42 1.6
16gb|AF199442.1|AF199442 Methanococcoides burtonii DEAD-box RNA he... 42 1.6
17gb|AF156261.1|AF156261 Methanobacterium thermoautotrophicum stra... 42 1.6
18emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-4... 42 1.6
19emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-2... 42 1.6
20gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.6
21ref|XM_584016.2| PREDICTED: Bos taurus similar to DEAD (Asp-Glu-... 40 6.4
22gb|AC101796.8| Mus musculus chromosome 1, clone RP24-206P18, com... 40 6.4
23gb|DQ483697.1| Gymnogyps californianus clone 120F microsatellite... 40 6.4
24gb|DQ483453.1| Gymnogyps californianus clone 12D microsatellite ... 40 6.4
25gb|AC122028.3| Mus musculus BAC clone RP24-394D4 from 2, complet... 40 6.4
26ref|XM_662498.1| Cryptosporidium hominis TU502 DEAD/DEAH box RNA... 40 6.4
27gb|AC163994.4| Mus musculus chromosome 1, clone RP24-132H2, comp... 40 6.4
28emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on ch... 40 6.4
29emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 o... 40 6.4
30ref|XM_780697.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
31emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.4
32emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete se... 40 6.4
33gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 6.4
34gb|AC104067.3| Homo sapiens BAC clone RP11-208N20 from 4, comple... 40 6.4
35emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chr... 40 6.4
36ref|XM_627810.1| Cryptosporidium parvum Iowa II Drs1p (cgd6_4830... 40 6.4
37dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.4
38gb|AF270176.1|AF270176 Staphylococcus epidermidis strain SR1 clo... 40 6.4
39gb|AF269784.1|AF269784 Staphylococcus epidermidis strain SR1 clo... 40 6.4
40gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 6.4
41dbj|AB083046.1| Corynebacterium glutamicum drp72 gene for hypoth... 40 6.4 
>ref|XM_493885.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score =  404 bits (204), Expect = e-109
 Identities = 404/468 (86%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   atcatacagtatgattcacctggagaggcttctgaatatgttcacagggttggaagaact 70
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcatacagtatgattcacctggggaggcttctgaatatgttcacagggttggaagaact 1323

                                                                        
Query: 71   gcaaggattggtgaaaagggggaggccctcctgtttctccaaccggttgaaatcgactac 130
            |||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||
Sbjct: 1324 gcaaggattggtgaaaagggggaggctctcctgtttctccaacctattgaaaccgactac 1383

                                                                        
Query: 131  ttgagagacctagagctgcatggtgtatctctgacagaataccccttccagaaggtgcta 190
            |||||||| |||||||| ||||||| ||| || |||||||||||| |||| |||||  ||
Sbjct: 1384 ttgagagatctagagctacatggtgcatcacttacagaataccccctccaaaaggtttta 1443

                                                                        
Query: 191  gacggtttccctgtaaatggagagaagcctctcaagaggaagccaatatctttggatatg 250
            ||| |||| |||||||||||| ||| || || ||| ||||||| ||||||||| ||||||
Sbjct: 1444 gacagttttcctgtaaatggacagaggcttcacaaaaggaagcaaatatctttagatatg 1503

                                                                        
Query: 251  catccgtggatactgtctgtacagcgaactctggaaaattacgtcgcatccgaggccaca 310
            ||||| |||||| ||||| ||||| || |  |||||| ||  ||| ||||||||| ||| 
Sbjct: 1504 catccatggataatgtctttacagagagcattggaaagttttgtcacatccgaggacacg 1563

                                                                        
Query: 311  acaaataagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccga 370
            || || |||||||| || |||||||||||||| ||| | ||||| ||||| |||||||||
Sbjct: 1564 acgaagaagcttgcaagagatgccttctgttcttgggtgcgcgcctacactgcccaccga 1623

                                                                        
Query: 371  ggcgagctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagc 430
            || || |||||||| || || ||||| |||||||||||  |||| ||||| || ||||||
Sbjct: 1624 ggtgaactgaagaagatttttatggtcaagaagctccatttggggcatgtagctagaagc 1683

                                                            
Query: 431  ttcgggttgaaaggagc-accctcattggtcgggaggtcgcaccaggt 477
            || |||||| ||||||| |||||| ||| | || ||||| ||||||||
Sbjct: 1684 tttgggttg-aaggagcaaccctccttgttgggaaggtcacaccaggt 1730
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>dbj|AK066175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055E22, full
            insert sequence
          Length = 2084

 Score =  404 bits (204), Expect = e-109
 Identities = 404/468 (86%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   atcatacagtatgattcacctggagaggcttctgaatatgttcacagggttggaagaact 70
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1271 atcatacagtatgattcacctggggaggcttctgaatatgttcacagggttggaagaact 1330

                                                                        
Query: 71   gcaaggattggtgaaaagggggaggccctcctgtttctccaaccggttgaaatcgactac 130
            |||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||
Sbjct: 1331 gcaaggattggtgaaaagggggaggctctcctgtttctccaacctattgaaaccgactac 1390

                                                                        
Query: 131  ttgagagacctagagctgcatggtgtatctctgacagaataccccttccagaaggtgcta 190
            |||||||| |||||||| ||||||| ||| || |||||||||||| |||| |||||  ||
Sbjct: 1391 ttgagagatctagagctacatggtgcatcacttacagaataccccctccaaaaggtttta 1450

                                                                        
Query: 191  gacggtttccctgtaaatggagagaagcctctcaagaggaagccaatatctttggatatg 250
            ||| |||| |||||||||||| ||| || || ||| ||||||| ||||||||| ||||||
Sbjct: 1451 gacagttttcctgtaaatggacagaggcttcacaaaaggaagcaaatatctttagatatg 1510

                                                                        
Query: 251  catccgtggatactgtctgtacagcgaactctggaaaattacgtcgcatccgaggccaca 310
            ||||| |||||| ||||| ||||| || |  |||||| ||  ||| ||||||||| ||| 
Sbjct: 1511 catccatggataatgtctttacagagagcattggaaagttttgtcacatccgaggacacg 1570

                                                                        
Query: 311  acaaataagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccga 370
            || || |||||||| || |||||||||||||| ||| | ||||| ||||| |||||||||
Sbjct: 1571 acgaagaagcttgcaagagatgccttctgttcttgggtgcgcgcctacactgcccaccga 1630

                                                                        
Query: 371  ggcgagctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagc 430
            || || |||||||| || || ||||| |||||||||||  |||| ||||| || ||||||
Sbjct: 1631 ggtgaactgaagaagatttttatggtcaagaagctccatttggggcatgtagctagaagc 1690

                                                            
Query: 431  ttcgggttgaaaggagc-accctcattggtcgggaggtcgcaccaggt 477
            || |||||| ||||||| |||||| ||| | || ||||| ||||||||
Sbjct: 1691 tttgggttg-aaggagcaaccctccttgttgggaaggtcacaccaggt 1737
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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score =  236 bits (119), Expect = 5e-59
 Identities = 194/219 (88%)
 Strand = Plus / Plus

                                                                         
Query: 56    agggttggaagaactgcaaggattggtgaaaagggggaggccctcctgtttctccaaccg 115
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 51565 agggttggaagaactgcaaggattggtgaaaagggggaggctctcctgtttctccaacct 51624

                                                                         
Query: 116   gttgaaatcgactacttgagagacctagagctgcatggtgtatctctgacagaatacccc 175
              |||||| ||||||||||||||| |||||||| ||||||| ||| || ||||||||||||
Sbjct: 51625 attgaaaccgactacttgagagatctagagctacatggtgcatcacttacagaatacccc 51684

                                                                         
Query: 176   ttccagaaggtgctagacggtttccctgtaaatggagagaagcctctcaagaggaagcca 235
              |||| |||||  ||||| |||| |||||||||||| ||| || || ||| ||||||| |
Sbjct: 51685 ctccaaaaggttttagacagttttcctgtaaatggacagaggcttcacaaaaggaagcaa 51744

                                                    
Query: 236   atatctttggatatgcatccgtggatactgtctgtacag 274
             |||||||| ||||||||||| |||||| ||||| |||||
Sbjct: 51745 atatctttagatatgcatccatggataatgtctttacag 51783



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 136/162 (83%), Gaps = 2/162 (1%)
 Strand = Plus / Plus

                                                                         
Query: 317   aagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccgaggcgag 376
             |||||||| || |||||||||||||| ||| | ||||| ||||| ||||||||||| || 
Sbjct: 52000 aagcttgcaagagatgccttctgttcttgggtgcgcgcctacactgcccaccgaggtgaa 52059

                                                                         
Query: 377   ctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagcttcggg 436
             |||||||| || || ||||| |||||||||||  |||| ||||| || |||||||| |||
Sbjct: 52060 ctgaagaagatttttatggtcaagaagctccatttggggcatgtagctagaagctttggg 52119

                                                       
Query: 437   ttgaaaggagc-accctcattggtcgggaggtcgcaccaggt 477
             ||| ||||||| |||||| ||| | || ||||| ||||||||
Sbjct: 52120 ttg-aaggagcaaccctccttgttgggaaggtcacaccaggt 52160



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                             
Query: 11    atcatacagtatgattcacctggagaggcttctgaatatgttcacagg 58
             ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 51135 atcatacagtatgattcacctggggaggcttctgaatatgttcacagg 51182
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>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
          Length = 151589

 Score =  236 bits (119), Expect = 5e-59
 Identities = 194/219 (88%)
 Strand = Plus / Plus

                                                                          
Query: 56     agggttggaagaactgcaaggattggtgaaaagggggaggccctcctgtttctccaaccg 115
              ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 133964 agggttggaagaactgcaaggattggtgaaaagggggaggctctcctgtttctccaacct 134023

                                                                          
Query: 116    gttgaaatcgactacttgagagacctagagctgcatggtgtatctctgacagaatacccc 175
               |||||| ||||||||||||||| |||||||| ||||||| ||| || ||||||||||||
Sbjct: 134024 attgaaaccgactacttgagagatctagagctacatggtgcatcacttacagaatacccc 134083

                                                                          
Query: 176    ttccagaaggtgctagacggtttccctgtaaatggagagaagcctctcaagaggaagcca 235
               |||| |||||  ||||| |||| |||||||||||| ||| || || ||| ||||||| |
Sbjct: 134084 ctccaaaaggttttagacagttttcctgtaaatggacagaggcttcacaaaaggaagcaa 134143

                                                     
Query: 236    atatctttggatatgcatccgtggatactgtctgtacag 274
              |||||||| ||||||||||| |||||| ||||| |||||
Sbjct: 134144 atatctttagatatgcatccatggataatgtctttacag 134182



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 136/162 (83%), Gaps = 2/162 (1%)
 Strand = Plus / Plus

                                                                          
Query: 317    aagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccgaggcgag 376
              |||||||| || |||||||||||||| ||| | ||||| ||||| ||||||||||| || 
Sbjct: 134399 aagcttgcaagagatgccttctgttcttgggtgcgcgcctacactgcccaccgaggtgaa 134458

                                                                          
Query: 377    ctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagcttcggg 436
              |||||||| || || ||||| |||||||||||  |||| ||||| || |||||||| |||
Sbjct: 134459 ctgaagaagatttttatggtcaagaagctccatttggggcatgtagctagaagctttggg 134518

                                                        
Query: 437    ttgaaaggagc-accctcattggtcgggaggtcgcaccaggt 477
              ||| ||||||| |||||| ||| | || ||||| ||||||||
Sbjct: 134519 ttg-aaggagcaaccctccttgttgggaaggtcacaccaggt 134559



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                              
Query: 11     atcatacagtatgattcacctggagaggcttctgaatatgttcacagg 58
              ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 133534 atcatacagtatgattcacctggggaggcttctgaatatgttcacagg 133581
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  236 bits (119), Expect = 5e-59
 Identities = 194/219 (88%)
 Strand = Plus / Plus

                                                                          
Query: 56     agggttggaagaactgcaaggattggtgaaaagggggaggccctcctgtttctccaaccg 115
              ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 534166 agggttggaagaactgcaaggattggtgaaaagggggaggctctcctgtttctccaacct 534225

                                                                          
Query: 116    gttgaaatcgactacttgagagacctagagctgcatggtgtatctctgacagaatacccc 175
               |||||| ||||||||||||||| |||||||| ||||||| ||| || ||||||||||||
Sbjct: 534226 attgaaaccgactacttgagagatctagagctacatggtgcatcacttacagaatacccc 534285

                                                                          
Query: 176    ttccagaaggtgctagacggtttccctgtaaatggagagaagcctctcaagaggaagcca 235
               |||| |||||  ||||| |||| |||||||||||| ||| || || ||| ||||||| |
Sbjct: 534286 ctccaaaaggttttagacagttttcctgtaaatggacagaggcttcacaaaaggaagcaa 534345

                                                     
Query: 236    atatctttggatatgcatccgtggatactgtctgtacag 274
              |||||||| ||||||||||| |||||| ||||| |||||
Sbjct: 534346 atatctttagatatgcatccatggataatgtctttacag 534384



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 136/162 (83%), Gaps = 2/162 (1%)
 Strand = Plus / Plus

                                                                          
Query: 317    aagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccgaggcgag 376
              |||||||| || |||||||||||||| ||| | ||||| ||||| ||||||||||| || 
Sbjct: 534601 aagcttgcaagagatgccttctgttcttgggtgcgcgcctacactgcccaccgaggtgaa 534660

                                                                          
Query: 377    ctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagcttcggg 436
              |||||||| || || ||||| |||||||||||  |||| ||||| || |||||||| |||
Sbjct: 534661 ctgaagaagatttttatggtcaagaagctccatttggggcatgtagctagaagctttggg 534720

                                                        
Query: 437    ttgaaaggagc-accctcattggtcgggaggtcgcaccaggt 477
              ||| ||||||| |||||| ||| | || ||||| ||||||||
Sbjct: 534721 ttg-aaggagcaaccctccttgttgggaaggtcacaccaggt 534761



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                              
Query: 11     atcatacagtatgattcacctggagaggcttctgaatatgttcacagg 58
              ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 533736 atcatacagtatgattcacctggggaggcttctgaatatgttcacagg 533783
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>gb|AY106861.1| Zea mays PCO095924 mRNA sequence
          Length = 606

 Score =  121 bits (61), Expect = 2e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                       
Query: 317 aagcttgccagggatgccttctgttcctggcttcgcgcttacaccgcccaccgaggcgag 376
           ||||||||||| |||||||||||||||||| |||| || ||||| || |||||||| || 
Sbjct: 23  aagcttgccagagatgccttctgttcctgggttcgtgcctacactgctcaccgaggtgaa 82

                                                                       
Query: 377 ctgaagaaaatcttcatggtgaagaagctccacctgggacatgtggcgagaagcttcggg 436
           ||||| ||||| ||||||||||| |||||||||||||| |||||  |||| |||||||||
Sbjct: 83  ctgaaaaaaattttcatggtgaaaaagctccacctgggccatgtancgaggagcttcggg 142
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>dbj|AK060179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-A08, full
            insert sequence
          Length = 1506

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                            
Query: 11   atcatacagtatgattcacctggagaggcttctgaatatgttcacagg 58
            ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1321 atcatacagtatgattcacctggggaggcttctgaatatgttcacagg 1368
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>ref|XM_705964.1| Candida albicans SC5314 hypothetical protein (CaO19.11188), mRNA
          Length = 1821

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 44   gaatatgttcacagggttggaagaactgc 72
            |||||||||||||| ||||||||||||||
Sbjct: 1591 gaatatgttcacagagttggaagaactgc 1619
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>ref|XM_705951.1| Candida albicans SC5314 putative RNA helicase (CaO19.3704), mRNA
          Length = 1821

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 44   gaatatgttcacagggttggaagaactgc 72
            |||||||||||||| ||||||||||||||
Sbjct: 1591 gaatatgttcacagagttggaagaactgc 1619
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>ref|XM_704987.1| Candida albicans SC5314 hypothetical protein (CaO19.2632), mRNA
          Length = 638

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 44  gaatatgttcacagggttggaagaactgc 72
           |||||||||||||| ||||||||||||||
Sbjct: 408 gaatatgttcacagagttggaagaactgc 436
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>gb|AC153589.2| Mus musculus 6 BAC RP23-89P21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226965

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 324    ccagggatgccttctgttcctggct 348
              |||||||||||||||||||||||||
Sbjct: 104124 ccagggatgccttctgttcctggct 104148
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>gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214838

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 324    ccagggatgccttctgttcctggct 348
              |||||||||||||||||||||||||
Sbjct: 175801 ccagggatgccttctgttcctggct 175825
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>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 238147

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 47     tatgttcacagggttggaagaactgcaagg 76
              ||||| |||||| |||||||||||||||||
Sbjct: 122366 tatgtgcacaggattggaagaactgcaagg 122395
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 43      tgaatatgttcacagggttggaagaactgcaag 75
               |||||||||||||||| | |||||||| |||||
Sbjct: 2046607 tgaatatgttcacaggataggaagaacagcaag 2046575
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>gb|AC008664.6| Homo sapiens chromosome 5 clone CTB-34B5, complete sequence
          Length = 132185

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    ttcacagggttggaagaactg 71
             |||||||||||||||||||||
Sbjct: 80209 ttcacagggttggaagaactg 80189
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>gb|AF199442.1|AF199442 Methanococcoides burtonii DEAD-box RNA helicase (deaD), hypothetical
            protein, and ribosomal protein L12 (rplJ) genes, complete
            cds; and ribosomal protein L10 (rplL) gene, partial cds
          Length = 4186

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 43   tgaatatgttcacagggttggaagaactgcaag 75
            |||||||||||||||| | |||||||| |||||
Sbjct: 1213 tgaatatgttcacaggataggaagaacagcaag 1245
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>gb|AF156261.1|AF156261 Methanobacterium thermoautotrophicum strain Marburg unknown gene
          Length = 1239

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 86  aagggggaggccctcctgtttctcc 110
           ||||| |||||||||||||||||||
Sbjct: 444 aagggtgaggccctcctgtttctcc 420
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>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187947

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    ttccctgtaaatggagagaag 217
              |||||||||||||||||||||
Sbjct: 133524 ttccctgtaaatggagagaag 133504
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>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197817

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    ttccctgtaaatggagagaag 217
              |||||||||||||||||||||
Sbjct: 190074 ttccctgtaaatggagagaag 190054
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 371     ggcgagctgaagaaaatcttc 391
               |||||||||||||||||||||
Sbjct: 6435833 ggcgagctgaagaaaatcttc 6435853
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>ref|XM_584016.2| PREDICTED: Bos taurus similar to DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 51, transcript variant 2 (LOC507418), mRNA
          Length = 1505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  cacagggttggaagaactgc 72
           ||||||||||||||||||||
Sbjct: 659 cacagggttggaagaactgc 678
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>gb|AC101796.8| Mus musculus chromosome 1, clone RP24-206P18, complete sequence
          Length = 171181

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    tgttcacagggttggaagaa 68
             ||||||||||||||||||||
Sbjct: 82063 tgttcacagggttggaagaa 82044
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>gb|DQ483697.1| Gymnogyps californianus clone 120F microsatellite sequence
          Length = 563

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  acagggttggaagaactgca 73
           ||||||||||||||||||||
Sbjct: 501 acagggttggaagaactgca 520
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>gb|DQ483453.1| Gymnogyps californianus clone 12D microsatellite sequence
          Length = 566

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  acagggttggaagaactgca 73
           ||||||||||||||||||||
Sbjct: 504 acagggttggaagaactgca 523
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>gb|AC122028.3| Mus musculus BAC clone RP24-394D4 from 2, complete sequence
          Length = 173301

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   tgaaaggagcaccctcattg 457
             ||||||||||||||||||||
Sbjct: 73648 tgaaaggagcaccctcattg 73667
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>ref|XM_662498.1| Cryptosporidium hominis TU502 DEAD/DEAH box RNA helicase (Chro.60555)
            partial mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 46   atatgttcacagggttggaagaactgcaaggattgg 81
            |||| |||| || ||||||||||||||||| |||||
Sbjct: 1074 atatattcatagagttggaagaactgcaagaattgg 1109
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>gb|AC163994.4| Mus musculus chromosome 1, clone RP24-132H2, complete sequence
          Length = 160383

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tgttcacagggttggaagaa 68
              ||||||||||||||||||||
Sbjct: 103164 tgttcacagggttggaagaa 103145
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>emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on chromosome 10 Contains the
              5' end of a novel gene, four novel genes and nine CpG
              islands, complete sequence
          Length = 136299

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gaggccctcctgtttctcca 111
              ||||||||||||||||||||
Sbjct: 116089 gaggccctcctgtttctcca 116108



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gaggccctcctgtttctcca 111
              ||||||||||||||||||||
Sbjct: 116001 gaggccctcctgtttctcca 116020



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gaggccctcctgtttctcca 111
              ||||||||||||||||||||
Sbjct: 115913 gaggccctcctgtttctcca 115932
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>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the
             RCN1 gene for EF-hand calcium binding domain protein
             reticulocalbin 1, a seudogene similar to part of EIF4A
             (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a
             putative CpG island, complete sequence
          Length = 94497

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ttccctgtaaatggagagaa 216
             ||||||||||||||||||||
Sbjct: 21770 ttccctgtaaatggagagaa 21751
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>ref|XM_780697.1| PREDICTED: Strongylocentrotus purpuratus similar to Heparin sulfate
            N-deacetylase/N-sulfotransferase (N-HSST) (N-heparin
            sulfate sulfotransferase) (Glucosaminyl
            N-deacetylase/N-sulfotransferase) (LOC580650), mRNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   tgaatatgttcacagggttg 62
            ||||||||||||||||||||
Sbjct: 1684 tgaatatgttcacagggttg 1665
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>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 1/10
          Length = 348071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   ctcattggtcgggaggtcgc 470
             ||||||||||||||||||||
Sbjct: 42426 ctcattggtcgggaggtcgc 42407
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>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4
          Length = 277703

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 46     atatgttcacagggttggaagaactgcaaggattgg 81
              |||| |||| || ||||||||||||||||| |||||
Sbjct: 115530 atatattcatagagttggaagaactgcaagaattgg 115565
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      tgttcacagggttggaagaa 68
               ||||||||||||||||||||
Sbjct: 1025625 tgttcacagggttggaagaa 1025644
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>gb|AC104067.3| Homo sapiens BAC clone RP11-208N20 from 4, complete sequence
          Length = 138481

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     aggcttctgaatatgttcac 55
              ||||||||||||||||||||
Sbjct: 103101 aggcttctgaatatgttcac 103120
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>emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chromosome 2, complete
              sequence
          Length = 166493

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    tgaaaggagcaccctcattg 457
              ||||||||||||||||||||
Sbjct: 105297 tgaaaggagcaccctcattg 105316
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>ref|XM_627810.1| Cryptosporidium parvum Iowa II Drs1p (cgd6_4830), partial mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 46   atatgttcacagggttggaagaactgcaaggattgg 81
            |||| |||| || ||||||||||||||||| |||||
Sbjct: 1164 atatattcatagagttggaagaactgcaagaattgg 1199
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   ctcattggtcgggaggtcgc 470
             ||||||||||||||||||||
Sbjct: 42426 ctcattggtcgggaggtcgc 42407
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>gb|AF270176.1|AF270176 Staphylococcus epidermidis strain SR1 clone step.1051g02 genomic
            sequence
          Length = 3598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gctgaagaaaatcttcatggtgaa 399
            |||||| |||||||||||||||||
Sbjct: 3155 gctgaacaaaatcttcatggtgaa 3132
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>gb|AF269784.1|AF269784 Staphylococcus epidermidis strain SR1 clone step.1023e06 genomic
            sequence
          Length = 3068

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gctgaagaaaatcttcatggtgaa 399
            |||||| |||||||||||||||||
Sbjct: 1318 gctgaacaaaatcttcatggtgaa 1295
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 87      agggggaggccctcctgtttctcc 110
               |||| |||||||||||||||||||
Sbjct: 1704928 agggtgaggccctcctgtttctcc 1704905
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>dbj|AB083046.1| Corynebacterium glutamicum drp72 gene for hypothetical protein,
            complete cds
          Length = 5669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  ctcattggtcgggaggtcgc 470
            ||||||||||||||||||||
Sbjct: 4034 ctcattggtcgggaggtcgc 4053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,949,153
Number of Sequences: 3902068
Number of extensions: 3949153
Number of successful extensions: 92861
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92707
Number of HSP's gapped (non-prelim): 154
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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