>TTL12_HUMAN (Q14166) Tubulin--tyrosine ligase-like protein 12|
          Length = 644

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 23/141 (16%)
 Frame = +3

Query: 93  DDRIRSFEDFARVHQFLLIAAGVPPSLHRRLYRKLADEVFDGGESFSVEPCEEGRQRR-- 266
           ++  ++  +FA +H   L A+GVP     RL  KL  EVFD GE F +   EE  +    
Sbjct: 22  EEGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDE 81

Query: 267 ---------------------LVLASGAPLGSEADVFLVDHAWSFRLSDALKQLREVPGL 383
                                +   SG        +FL+DHAW+ R+  A +QL++VPGL
Sbjct: 82  AAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGL 141

Query: 384 AERMAALMCVDLDRRIEVEEA 446
             RMA LM ++    +   EA
Sbjct: 142 LHRMANLMGIEFHGELPSTEA 162

>YLN9_CAEEL (Q09512) Hypothetical protein D2013.9 in chromosome II|
          Length = 662

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
 Frame = +3

Query: 111 FEDFARVHQFLLIAAGVPPSLHRRLYRKLADEVFDGGESFSVEPCE--EGRQRRLVLASG 284
           F  F   H   L A+ VPP L   LY+KL+D+ FD G+ F +  CE  E  ++ L + + 
Sbjct: 10  FSTFLDQHSGQLNASDVPPELWHSLYKKLSDQTFDAGDHFQII-CEMNEDDEKTLFVRAL 68

Query: 285 APL--GSEADVFLVDHAWSFRLSDALKQLREVPGLAERMAALMCVDLDRRIEVEE 443
             L    E ++FL+DH  SF    A K +    GL ER+A L  +D D   EV+E
Sbjct: 69  EDLHNNDEDNIFLIDHFMSFSSESARKCVESTEGLVERLAGLFGIDTDSTEEVDE 123

>SPH1_XENLA (Q09003) Sphere organelles protein SPH-1 (Sphere protein 1)|
          Length = 536

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = -1

Query: 340 RKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDGG 161
           RK H     K  +  P   P     R+C P +     KLS    TSS+    +  CSD  
Sbjct: 170 RKTHKGKRTKKKSEAPIENPPDKHSRKCPPQASNKALKLSWKRQTSSSDSSDTSSCSDQP 229

Query: 160 TPAAISRNWCTLAKSSKLRMRSS 92
           TP    +   +  + ++   R S
Sbjct: 230 TPTTQQKPQSSAKRQNQAATRES 252

>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)|
          Length = 1522

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 326 VVDEEDVRLAPKRRPGGEHEAALPP---FLAGLDGEALPAVEHLVGELAVQPPMQRRRHA 156
           VV +E     PKR P     +ALPP   F      +A PA E   GE    P +Q R H+
Sbjct: 429 VVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGE----PAVQTRNHS 484

Query: 155 GRNQ 144
            R +
Sbjct: 485 KRTR 488

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 301 SLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDGGTPAAIS 143
           SLP GAP  S      P+S  ST +L P   T +A+    RR  D  +P A S
Sbjct: 798 SLPHGAPAPSPAASARPAS-SSTPRLGPAPTTRTAAPSPDRR--DSASPGAAS 847

>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor|
          Length = 317

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/82 (24%), Positives = 41/82 (50%)
 Frame = -1

Query: 388 SANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSN 209
           S++  +S S  S+S  +   +  +  +S+S  + +  +S+  +   SS  S++  + PS+
Sbjct: 155 SSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSS 214

Query: 208 TSSASLRYSRRCSDGGTPAAIS 143
           + S+S   S       TPA+ S
Sbjct: 215 SKSSSKFSSSSFITSTTPASSS 236

>CRLS1_MOUSE (Q80ZM8) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS)
          Length = 303

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 LRPACRRRCIGGCTASSPTRCSTAGRASPSSPARKGGSAASCSP 279
           LRPA     + G  A   T CS AG+A+P  PA  GG AA+ +P
Sbjct: 51  LRPAAFALRLPG--AGPRTHCSGAGKAAP-EPAAGGGGAAAQAP 91

>DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 740

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 373 TSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTE---KLSPPSNTS 203
           TS + +++S RR     +T+    S    +P +++     P SQ ST    K   PS TS
Sbjct: 282 TSYTKIASSSRRS----TTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTS 337

Query: 202 SASLRYSRRCSDGGTPAAIS 143
             SLR  R    GG+  +++
Sbjct: 338 PGSLRKQRSSQHGGSSTSLA 357

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 29/114 (25%), Positives = 42/114 (36%)
 Frame = -1

Query: 403  RAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKL 224
            + A L+  P    S  S+ E+       ++  S S  R   E  +R R    S   +   
Sbjct: 1283 KTARLNRRPRNQES--SSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSR 1340

Query: 223  SPPSNTSSASLRYSRRCSDGGTPAAISRNWCTLAKSSKLRMRSSRXXXXXXXGD 62
            S  S +S  S  YSR  S G      +R+  +  +S K    SSR        D
Sbjct: 1341 SRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYD 1394

>TTBK2_MOUSE (Q3UVR3) Tau-tubulin kinase 2|
          Length = 1243

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
 Frame = -1

Query: 400  AAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGST---- 233
            A IL      SRS          H   T   S  +PR +P AS R   LP +  S+    
Sbjct: 1111 AQILQNGSQKSRSTTQCKSPGSPHNPKTPPKSPVVPRRSPSASPRSSSLPRTSSSSPSRA 1170

Query: 232  ---------------EKLSPPSNTSSASLRYS 182
                              SPPS++ S+S R S
Sbjct: 1171 GRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRS 1202

>THRB_RAT (P18292) Prothrombin precursor (EC 3.4.21.5) (Coagulation factor|
           II) [Contains: Activation peptide fragment 1; Activation
           peptide fragment 2; Thrombin light chain; Thrombin heavy
           chain]
          Length = 617

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 322 STRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPP 215
           + R+   S+P    E  T  +  P S+GS E LSPP
Sbjct: 176 TVRREECSIPVCGQEGRTTVKMTPRSRGSKENLSPP 211

>OTX2_MOUSE (P80206) Homeobox protein OTX2|
          Length = 289

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -1

Query: 292 RGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDGGTPAAISRNWCTLAKSS 113
           R A + S+  R + S  G++ + +PPS+TS  ++  S       +PA+IS     L+ SS
Sbjct: 109 RPAKKKSSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSS 168

Query: 112 KLRMRS 95
               RS
Sbjct: 169 SCMQRS 174

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = -1

Query: 379 PGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSS 200
           PG++      S R  D        SAS  +  PE S +    P S G TE +S  +    
Sbjct: 217 PGSTGEGDLVSLRENDMKPPDNTDSASTKKTDPEFSGK--LTPGSSGKTELVSSVTVAPV 274

Query: 199 ASLRYSRRCSDGGTPAAISRN 137
            S   +  CS G  PAA+  +
Sbjct: 275 TSENVNPVCSGGAGPAAVGNS 295

>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
 Frame = -1

Query: 388  SANPGTSRSCLSAS---------ERRKDHAWSTR-KTSASLPRGAPEASTRRRCLPSSQG 239
            +++  TS S  SAS         E   D     R K ++S  R +  +++ +R    S  
Sbjct: 1129 ASSTATSSSSSSASSPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNSSKRSSSKSSN 1188

Query: 238  STEKLSPPSNTSSASLRYSRRCSDGGTPAAISRNWCTLAKSSKLRMRSSR 89
            S+++ S  S++SS+S R S   S        S N  + + SSK    SSR
Sbjct: 1189 SSKRSSSSSSSSSSSSRSSSSSSSS------SSNSKSSSSSSKSSSSSSR 1232

>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog|
          Length = 344

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GGC  S P  C   G       +  GG   S SPP
Sbjct: 69  GGCPLSPPQGCGGGGGGGGGGGSGSGGGGISLSPP 103

>YMD5_CAEEL (P34459) Hypothetical protein F54H12.5|
          Length = 880

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 385 ANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNT 206
           A+P T  + +S+S+   + +  T  T +S     PE ST      SS  S   L+  S T
Sbjct: 359 ASPTTPETTISSSDSTNESSSITSSTDSSTNSMLPETSTIDPGSQSSSYSGNSLTASSTT 418

Query: 205 SSASL 191
           S  S+
Sbjct: 419 SDPSI 423

>SLAP_BACCI (P35824) S-layer-related protein precursor|
          Length = 1616

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 151  RPACRRRCIGGCTASSPTRCSTAGRASPSSPARKGGSAASCSP 279
            RP  RRR +    A  PTR S    ASP+         +SC P
Sbjct: 1419 RPGARRRPLSATEAGGPTRWSPPRSASPTLHPTGRARMSSCWP 1461

>URE2_PROMM (Q7V3V3) Urease beta subunit (EC 3.5.1.5) (Urea amidohydrolase beta|
           subunit)
          Length = 105

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 444 PLRPQFSYPDPRTLELPFSRPILVLHVA 361
           PL P    P+P TLEL  +RP L L VA
Sbjct: 3   PLIPGELIPEPGTLELNSNRPTLTLRVA 30

>GLDSA_MICEC (Q6QVU4) L-glutamine:2-deoxy-scyllo-inosose aminotransferase (EC|
           2.6.1.-) (L-glutamine:DOI aminotransferase)
          Length = 420

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 147 IAAGVPPSLHRRLYRKLADEVFDG-----GESFSVEPCEEGRQRRLVLASGAPLGSEADV 311
           I A  PP  H RLY+      F G        +S+   E+  QR + +   A LG E+D+
Sbjct: 342 IYASYPPMNHNRLYQPATRARFKGIAGLDLTGYSLPVAEDAGQRVVTIHHSALLGDESDM 401

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
 Frame = -1

Query: 376 GTSRSCLSASERRKDHAWSTRKTSASLPRGAP----EASTRRRCLPSSQGSTEKLSPPSN 209
           G+     +A+        +T K  A    G P     AS RRR   SS  S+   +  S 
Sbjct: 319 GSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSR 378

Query: 208 TSSASLRYSRR----CSDGGTPAAISRNWCTLAKSSKLRMRS 95
           +SS S   SRR       G    + SR+W      S+   RS
Sbjct: 379 SSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRS 420

>ECT2_MOUSE (Q07139) ECT2 protein (Epithelial cell-transforming sequence 2|
           oncogene)
          Length = 738

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 316 RKTSASLPRGAPEASTRRRCLP---SSQGSTEKLSPPSNTSSASLRYSRRCSDGGTPA 152
           +KTS  + R    + T +R L    SS  S+E  SPPS+   A  R S   S  G P+
Sbjct: 656 KKTSKKVTRAFSFSKTPKRALRMALSSSHSSEGRSPPSSGKLAVSRLSSTSSLAGIPS 713

>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide|
            exchange factor 1 (BFA-resistant GEF 1)
          Length = 1856

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 319  TRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPP 215
            TR TS+S P G+P AS+  R  PS +G      PP
Sbjct: 1771 TRATSSSSP-GSPVASSPSRLSPSPEGPPPLAQPP 1804

>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 756

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 373 TSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTE---KLSPPSNTS 203
           TS + ++++ RR     +T+    S    +P +++     P SQ ST    K   PS TS
Sbjct: 282 TSYTKIASASRRG----TTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTS 337

Query: 202 SASLRYSRRCSDGGTPAAIS 143
             SLR  R    GG+  ++S
Sbjct: 338 PGSLRKQRISQHGGSSTSLS 357

>OTX2_HUMAN (P32243) Homeobox protein OTX2|
          Length = 289

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -1

Query: 292 RGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDGGTPAAISRNWCTLAKSS 113
           R A + ++  R + S  G++ + +PPS+TS  ++  S       +PA+IS     L+ SS
Sbjct: 109 RPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSS 168

Query: 112 KLRMRS 95
               RS
Sbjct: 169 SCMQRS 174

>TBX15_MOUSE (O70306) T-box transcription factor TBX15 (T-box protein 15)|
           (MmTBx8)
          Length = 602

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GG T +SPT  ST    +PS  A     + SCSPP
Sbjct: 342 GGSTGTSPTTSSTG---TPSPSASSHLLSPSCSPP 373

>TBX15_HUMAN (Q96SF7) T-box transcription factor TBX15 (T-box protein 15)|
          Length = 602

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GG T +SPT  ST    +PS  A     + SCSPP
Sbjct: 342 GGSTGTSPTTSSTG---TPSPSASSHLLSPSCSPP 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,281,285
Number of Sequences: 219361
Number of extensions: 888309
Number of successful extensions: 4534
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4521
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)