ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54e12 |
|---|---|
| Clone Library Name | barley_pub |
>COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-)| Length = 259 Score = 32.3 bits (72), Expect = 0.46 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +1 Query: 178 LAAASWVEPAPGVLPPKIGTISLFSAARFGVGRG 279 LAAA W P G+L IG I +A RFG+ G Sbjct: 39 LAAAIWAAPVAGLLVGLIGAIVFATAERFGLAMG 72
>ENL_HUMAN (Q03111) Protein ENL| Length = 559 Score = 31.6 bits (70), Expect = 0.79 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -1 Query: 342 SAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKK 244 S + PG +P ++ FSD+ P+ D S+RG+K Sbjct: 308 SRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEK 340
>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2| Length = 1009 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 318 PTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 229 P G PF+ R P PDA ++ G++ RP+ Sbjct: 225 PAPQGDRPFNQRAPRPDANANFGQRAPRPE 254
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 391 RGAGPANGLAGARDRLLRS-ATRAKPDAARN-SPIFRSNSLSRRQ 263 RG GP AGAR RS A AARN S RS SLSRR+ Sbjct: 1214 RGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRE 1258
>GLGX_HAEIN (P45178) Glycogen operon protein glgX homolog (EC 3.2.1.-)| Length = 659 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = -2 Query: 263 NLAAEKREIVPIFGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRWCL 84 N +AE + P F R + + +GR WT + + S R+W + Sbjct: 262 NHSAESEQTYPTFSQRGIDDQTYYWRNDQGRYINWTGCGNMLNLSSDVG------RKWVV 315 Query: 83 EKILFWVLVCD*AGFRASCSSAL 15 + + +WV C GFR ++ L Sbjct: 316 DCLRYWVEQCHIDGFRFDLATVL 338
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -1 Query: 357 RATG---SSAAP--PGLNPTRPGTAPFSDRIPSPDA 265 RA G SSAAP PG P PG P S+ P P A Sbjct: 218 RAVGRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRA 253
>CHEB1_CAUCR (O87717) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 344 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +2 Query: 245 FFPRLDLASGEGIR-SENGAV--PGRVGFSPGGAAEEPVARS 361 F RLD +SG ++ + +GA+ PG+V +PGGA V RS Sbjct: 198 FAARLDRSSGAKVQEASDGALLEPGKVYVAPGGATHLEVVRS 239
>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 618 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = -2 Query: 227 FGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRW 90 FG R PG+GS + + GE W G I S G S R W Sbjct: 87 FGARVPGSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAW 132
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -1 Query: 363 PERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRP 232 PE A S+AA PG P P +AP P + SS RP Sbjct: 1417 PEDAATSAAAAPGEGPAAPSSAP-------PPSNSSSSSAPRRP 1453
>CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 619 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = -2 Query: 227 FGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRW 90 FG R PG+GS + + GE W G I S G S R W Sbjct: 87 FGARVPGSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAW 132
>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 817 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 327 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRN 238 G NP +P T P + P PD +S RG R+ Sbjct: 13 GGNPLQPPTTPSPEPEPEPDGRSRRGGGRS 42
>ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -2 Query: 236 VPIFGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRR 93 V IF G+ G+GS+ D AA+G G +G+ ++ + F R R Sbjct: 750 VVIFAGKEYGSGSSRDWAAKG--------PGLLGVKAVIAESFERIHR 789
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = -2 Query: 263 NLAAEKREIVPIFGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRR 93 N AA+ +V + GG+ G+GS+ D AA+G TR+ +G+ ++ + F R R Sbjct: 821 NYAAQNIPLV-VLGGKEYGSGSSRDWAAKG-----TRL---LGVRAVIAESFERIHR 868
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 327 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 223 G P++ AP + +PSP +S G RP+LR Sbjct: 1982 GRAPSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016
>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2| Length = 964 Score = 28.9 bits (63), Expect = 5.1 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Frame = -2 Query: 329 PG*TRRGPEQPHFQIEFPLPTPNLAAEKREIVPIFGGRTPGAG------STHDAAARGRG 168 PG RGP P P P AA + P GG PG G S D GRG Sbjct: 284 PGGDNRGPRPAGAGDRGPRPAPAAAAPSQPPAPAPGGSRPGKGKKGGERSWDDNKKGGRG 343
>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -2 Query: 230 IFGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRR 93 IF G+ G+GS+ D AA+G G +GI ++ + F R R Sbjct: 752 IFAGKEYGSGSSRDWAAKG--------PGLLGIKAVIAESFERIHR 789
>ARCC_RHIET (O31019) Carbamate kinase (EC 2.7.2.2)| Length = 310 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/27 (55%), Positives = 15/27 (55%) Frame = -2 Query: 224 GGRTPGAGSTHDAAARGRGERWTRING 144 G RT GS D A RGER T ING Sbjct: 276 GNRTAAIGSLADIAGLVRGERGTIING 302
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 318 PTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 223 P++ AP + +PSP +S G RP+LR Sbjct: 1985 PSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = -1 Query: 363 PERATGSSAAPPGLNPTRPGTA---PFSDRIPSPDAKSSRG 250 P G+ AA PG TRPGT P + P A + RG Sbjct: 192 PAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRG 232
>CTR1_MOUSE (Q09143) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor) (ERR) (Ecotropic retrovirus receptor) Length = 622 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -2 Query: 227 FGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRW 90 FG R P GS + + GE W I G I S G S R W Sbjct: 87 FGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAW 132
>RUMB_HAEIN (P44083) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)| (23S rRNA(M-5-U747)-methyltransferase) Length = 392 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -2 Query: 125 IFSGMFSRTRRWCLEKILF--WVLVCD*AGFRASCSSALQ 12 + +G+++ ++W E ++ W L C GF C+ ALQ Sbjct: 223 VAAGLYATAQQWVAEFPIYNLWDLFCGVGGFGLHCAKALQ 262
>CTR1_RAT (P30823) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor) (ERR) (Ecotropic retrovirus receptor) Length = 624 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -2 Query: 227 FGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRW 90 FG R P GS + + GE W I G I S G S R W Sbjct: 87 FGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAW 132
>TR2M_AGRRH (Q09109) Tryptophan 2-monooxygenase (EC 1.13.12.3)| Length = 749 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 248 FPRLDLASGEGIRSENGAVPGRVGFSPGGAAEEPVARSG 364 FP +DL G E+ A GR+G+ P G + VA G Sbjct: 190 FPTVDLLYDYGKFFESCAADGRIGYFPEGVTKPKVAIIG 228
>HMEN_ARTSF (Q05640) Homeobox protein engrailed| Length = 349 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 342 SAAPPGLNPTRPGTAPFSDRIPSP 271 SA+ PG +P RPG+A S + SP Sbjct: 32 SASTPGPSPDRPGSATMSSPLSSP 55
>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor homolog) (ERR) (Ecotropic retrovirus receptor homolog) Length = 629 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -2 Query: 227 FGGRTPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRRW 90 FG R P GS + + GE W I G I S G S R W Sbjct: 87 FGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAW 132
>CABP4_HUMAN (P57796) Calcium-binding protein 4 (CaBP4)| Length = 275 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 17/41 (41%) Frame = -1 Query: 351 TGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 229 TG A NP G P SP SSR R+RPD Sbjct: 62 TGPEAPGSSNNPPSTGEGPAGAPPASPGPASSRQSHRHRPD 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,211,048 Number of Sequences: 219361 Number of extensions: 1106089 Number of successful extensions: 4499 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4493 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
