Clone Name | bastl54e12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 4e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 290 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 349 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388 Query: 350 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 409 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448 Query: 410 cccccggcggt 420 ||||||||||| Sbjct: 19187449 cccccggcggt 19187459 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccctc 180 ||||||||||||||||||||| Sbjct: 13847317 catctttctcctcttcccctc 13847297
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 93.7 bits (47), Expect = 4e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 290 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 349 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330 Query: 350 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 409 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390 Query: 410 cccccggcggt 420 ||||||||||| Sbjct: 391 cccccggcggt 401
>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full insert sequence Length = 2576 Score = 93.7 bits (47), Expect = 4e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 290 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 349 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320 Query: 350 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 409 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380 Query: 410 cccccggcggt 420 ||||||||||| Sbjct: 381 cccccggcggt 391
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 93.7 bits (47), Expect = 4e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 290 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 349 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376 Query: 350 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 409 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436 Query: 410 cccccggcggt 420 ||||||||||| Sbjct: 437 cccccggcggt 447
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 79.8 bits (40), Expect = 7e-12 Identities = 110/132 (83%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 290 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 348 |||||||||| ||| ||||| ||||| || || || |||||||||||| | ||||| || Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909 Query: 349 tgtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgc 408 || |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969 Query: 409 tcccccggcggt 420 ||||||||||| Sbjct: 120970 gcccccggcggt 120981
>ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1870 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 ctcttcccctcgcggcggcgtc 191 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 ctcttcccctcgcggcggcgtc 191 |||||||||||||||||||||| Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 ctcttcccctcgcggcggcgtc 191 |||||||||||||||||||||| Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 ctcttcccctcgcggcggcgtc 191 |||||||||||||||||||||| Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence Length = 1873 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 ctcttcccctcgcggcggcgtc 191 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccggccccgcgccgcggtac 395 ||||||||||||||||||||| Sbjct: 3378810 gccggccccgcgccgcggtac 3378830
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 aaaatagtattttctctaaac 88 ||||||||||||||||||||| Sbjct: 1299937 aaaatagtattttctctaaac 1299957
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccctc 180 ||||||||||||||||||||| Sbjct: 60976 catctttctcctcttcccctc 60956
>gb|BC025080.1| Mus musculus apoptosis antagonizing transcription factor, mRNA (cDNA clone MGC:35916 IMAGE:2648117), complete cds Length = 1800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 251 catctttctcctcttcccct 232
>ref|NM_019816.1| Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1844 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1883 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 325 catctttctcctcttcccct 306
>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ggtttagcccgggtggcgct 337 |||||||||||||||||||| Sbjct: 1111 ggtttagcccgggtggcgct 1130
>gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 16, complete sequence Length = 188708 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 caatctgaagtgcagaagag 27 |||||||||||||||||||| Sbjct: 24304 caatctgaagtgcagaagag 24285
>ref|XM_777733.1| PREDICTED: Strongylocentrotus purpuratus similar to centrosome-associated protein 350 (LOC577510), mRNA Length = 10727 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 atccgcgtccatctttctcctctt 174 |||||| ||||||||||||||||| Sbjct: 6834 atccgcctccatctttctcctctt 6811
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcgccggccccgcgccgcgg 392 |||||||||||||||||||| Sbjct: 229143 tcgccggccccgcgccgcgg 229162
>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete sequence Length = 198743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 52540 catctttctcctcttcccct 52559
>dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430031I20 product:apoptosis antagonizing transcription factor, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 262 catctttctcctcttcccct 243
>gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 128143 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 caatctgaagtgcagaagag 27 |||||||||||||||||||| Sbjct: 93497 caatctgaagtgcagaagag 93478
>dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830465M17 product:traube, full insert sequence Length = 1995 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 288 catctttctcctcttcccct 269
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tcgccggccccgcgccgcgg 392 |||||||||||||||||||| Sbjct: 584216 tcgccggccccgcgccgcgg 584197
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 tcctcttcccctcgcggcggcgtc 191 |||||||||| ||||||||||||| Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
>gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds Length = 1844 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 catctttctcctcttcccct 179 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-397e16, complete sequence Length = 214471 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 caatctgaagtgcagaagag 27 |||||||||||||||||||| Sbjct: 24326 caatctgaagtgcagaagag 24307
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 tcctcttcccctcgcggcggcgtc 191 |||||||||| ||||||||||||| Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239
>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete sequence Length = 211848 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 caatctgaagtgcagaagag 27 |||||||||||||||||||| Sbjct: 210431 caatctgaagtgcagaagag 210450
>gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-372h6, complete sequence Length = 211256 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 caatctgaagtgcagaagag 27 |||||||||||||||||||| Sbjct: 62147 caatctgaagtgcagaagag 62166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,229,698 Number of Sequences: 3902068 Number of extensions: 3229698 Number of successful extensions: 63966 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63692 Number of HSP's gapped (non-prelim): 273 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)