ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54e08 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 69.3 bits (168), Expect = 4e-12 Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Frame = +3 Query: 180 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 332 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 333 ESREFLRKLCVGTEVTFRVDYTAPNIGRESGTVY 434 +REFLRK +G EV F ++ P GRE G +Y Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 39.3 bits (90), Expect = 0.004 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 335 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGTEVTFRVDYTAP 404 +REFLRK +G +V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 68.9 bits (167), Expect = 5e-12 Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 15/113 (13%) Frame = +3 Query: 141 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 302 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 303 RGGV---------DEPFAWESREFLRKLCVGTEVTFRVDYTAPNIGRESGTVY 434 R DEP+A+ +REFLRK +G EV F ++ P GRE G +Y Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 38.5 bits (88), Expect = 0.007 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 335 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGTEVTFRVDYTAP 404 +REFLRK +G +V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 68.9 bits (167), Expect = 5e-12 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 9/106 (8%) Frame = +3 Query: 144 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 308 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 309 ----GVDEPFAWESREFLRKLCVGTEVTFRVDYTAPNIGRESGTVY 434 DEP+A+++REF+RK +G EV F V+ P GRE G VY Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVY 113 Score = 36.6 bits (83), Expect = 0.027 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 332 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 333 ESREFLRKLCVGTEVTFRVDY 395 E+REFLRK +G +V VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 68.6 bits (166), Expect = 6e-12 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 15/110 (13%) Frame = +3 Query: 150 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 311 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 312 V---------DEPFAWESREFLRKLCVGTEVTFRVDYTAPNIGRESGTVY 434 DEP+A+ +REFLRK +G EV F ++ P GRE G +Y Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 112 Score = 38.9 bits (89), Expect = 0.005 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 335 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 336 SREFLRKLCVGTEVTFRVDYTAP 404 +REFLRK +G +V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 67.4 bits (163), Expect = 1e-11 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 9/94 (9%) Frame = +3 Query: 180 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 332 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 333 ESREFLRKLCVGTEVTFRVDYTAPNIGRESGTVY 434 +REFLRK +G EV F ++ P GRE G +Y Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 39.3 bits (90), Expect = 0.004 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 186 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 335 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 336 SREFLRKLCVGTEVTFRVDYTAP 404 +REFLRK +G +V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -1 Query: 395 VIHSECDLRSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 252 V + E D ++ + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 30.0 bits (66), Expect = 2.5 Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 2/129 (1%) Frame = -2 Query: 409 MLGAV*STLNVTSVPTQSFLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALV 233 +LG + V FL +SLLS A + PP S R R S S+ + Sbjct: 300 VLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSL 359 Query: 232 LPMMRRQSPEVTAFTLPLSH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SL 56 P RR T F L P+ P AP P LP +P + + P+ SL Sbjct: 360 RPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSL 415 Query: 55 LSRPDPDPN 29 L P P P+ Sbjct: 416 LGLPTPGPS 424
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 117 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 284 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 285 APRLA 299 PR A Sbjct: 292 LPRTA 296
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 120 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 233 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 7.4 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -2 Query: 328 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 161 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 160 VFDAMIAPWDWPAASG 113 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +3 Query: 195 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWES 338 AV +GD LLI G + + P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,285,329 Number of Sequences: 219361 Number of extensions: 1315752 Number of successful extensions: 3475 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3469 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
