ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 291 1e-75
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 291 1e-75
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
4gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 145 1e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 76 1e-10
9ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 76 1e-10
10gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence 76 1e-10
11gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, comp... 76 1e-10
12gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like p... 76 1e-10
13gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 66 1e-07
14dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 64 4e-07
15dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 64 4e-07
16dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 64 4e-07
17gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complet... 56 1e-04
18emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 54 4e-04
19dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone... 50 0.006
20gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.37
21emb|AJ632310.1| Cotesia congregata virus complete genome, segmen... 42 1.5
22gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, ... 42 1.5
23gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 40 5.8
24gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, com... 40 5.8
25gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partia... 40 5.8
26gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 5.8
27emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chro... 40 5.8
28gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance... 40 5.8
29gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, compl... 40 5.8
30gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, comple... 40 5.8
31emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in ... 40 5.8
32gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer... 40 5.8 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  291 bits (147), Expect = 1e-75
 Identities = 221/245 (90%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 162 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 222 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 279 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 338
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 339 agggagtttctgaggaaactttgcgtaggaacggaggtcacattcagagtggattacaca 398
           ||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                
Query: 399 gctcc 403
           |||||
Sbjct: 477 gctcc 481
to top
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  291 bits (147), Expect = 1e-75
 Identities = 221/245 (90%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 162 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                                                                       
Query: 222 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 76  atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135

                                                                       
Query: 279 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 338
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195

                                                                       
Query: 339 agggagtttctgaggaaactttgcgtaggaacggaggtcacattcagagtggattacaca 398
           ||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 196 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 255

                
Query: 399 gctcc 403
           |||||
Sbjct: 256 gctcc 260
to top
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  291 bits (147), Expect = 1e-75
 Identities = 221/245 (90%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 162 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 222 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 279 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 338
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 339 agggagtttctgaggaaactttgcgtaggaacggaggtcacattcagagtggattacaca 398
           ||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                
Query: 399 gctcc 403
           |||||
Sbjct: 477 gctcc 481
to top
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 162 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                                                                       
Query: 222 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164

                              
Query: 279 cttatggccccaaggctgg 297
           || ||||||||||||||||
Sbjct: 165 ctcatggccccaaggctgg 183



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                       
Query: 296 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 355
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 600

                         
Query: 356 actttgcgtaggaa 369
           ||| ||| ||||||
Sbjct: 601 actctgcataggaa 614



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 371 ggaggtcacattcagagtggattacacagctcc 403
           ||||||||||||||||||||| |||||||||||
Sbjct: 734 ggaggtcacattcagagtggactacacagctcc 766
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 162      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                                                            
Query: 222      atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
                |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767

                                   
Query: 279      cttatggccccaaggctgg 297
                || ||||||||||||||||
Sbjct: 19123766 ctcatggccccaaggctgg 19123748



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                            
Query: 296      ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 355
                |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 19123331

                              
Query: 356      actttgcgtaggaa 369
                ||| ||| ||||||
Sbjct: 19123330 actctgcataggaa 19123317



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 371      ggaggtcacattcagagtggattacacagctcc 403
                ||||||||||||||||||||| |||||||||||
Sbjct: 19123197 ggaggtcacattcagagtggactacacagctcc 19123165
to top
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                         
Query: 162   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                                                         
Query: 222   atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
             |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016

                                
Query: 279   cttatggccccaaggctgg 297
             || ||||||||||||||||
Sbjct: 22015 ctcatggccccaaggctgg 21997



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                         
Query: 296   ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 355
             |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 21580

                           
Query: 356   actttgcgtaggaa 369
             ||| ||| ||||||
Sbjct: 21579 actctgcataggaa 21566



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 371   ggaggtcacattcagagtggattacacagctcc 403
             ||||||||||||||||||||| |||||||||||
Sbjct: 21446 ggaggtcacattcagagtggactacacagctcc 21414
to top
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 162    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 221
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                                                          
Query: 222    atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 278
              |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288

                                 
Query: 279    cttatggccccaaggctgg 297
              || ||||||||||||||||
Sbjct: 129287 ctcatggccccaaggctgg 129269



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                          
Query: 296    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 355
              |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 128852

                            
Query: 356    actttgcgtaggaa 369
              ||| ||| ||||||
Sbjct: 128851 actctgcataggaa 128838



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                               
Query: 371    ggaggtcacattcagagtggattacacagctcc 403
              ||||||||||||||||||||| |||||||||||
Sbjct: 128718 ggaggtcacattcagagtggactacacagctcc 128686
to top
>ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G61780 mRNA,
           complete cds
          Length = 3552

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 315 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaacggag 374
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||| ||||
Sbjct: 444 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 503

                                 
Query: 375 gtcacattcagagtggattaca 396
           ||  | |||| |||||||||||
Sbjct: 504 gttgctttcaaagtggattaca 525
to top
>ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G07350 mRNA,
           complete cds
          Length = 3397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 315 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaacggag 374
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||| ||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 375 gtcacattcagagtggattaca 396
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
to top
>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence
          Length = 3381

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 295 tggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 354
           |||| |||||||||||||| |||||||||||||| ||| ||||||| || ||  ||||||
Sbjct: 319 tggcacgtcgtggtggagtggatgagccatttgcatggcaaagcagagacttcttgagga 378

                                         
Query: 355 aactttgcgtaggaacggaggtcacattca 384
           | |||||| | |||| ||||||||| ||||
Sbjct: 379 agctttgcattggaaaggaggtcactttca 408
to top
>gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, complete cds
          Length = 3397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 315 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaacggag 374
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||| ||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 375 gtcacattcagagtggattaca 396
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
to top
>gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like protein (At5g61780)
           mRNA, complete cds
          Length = 3538

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 315 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaacggag 374
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||| ||||
Sbjct: 445 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 504

                                 
Query: 375 gtcacattcagagtggattaca 396
           ||  | |||| |||||||||||
Sbjct: 505 gttgctttcaaagtggattaca 526
to top
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                          
Query: 296    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 355
              ||||||| | ||||| |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 103351 ggctcgtagaggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgaggaa 103292

                   
Query: 356    acttt 360
               ||||
Sbjct: 103291 gcttt 103287
to top
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 306 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 365
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 366 ggaacggaggtcacattcagagtggattacac 397
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 186 aaggtgaaggctgtgacttctggggactgc 215
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
to top
>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9
          Length = 57246

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 315   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgc 362
             |||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 27733 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgc 27780
to top
>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 306 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 365
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 366 ggaacggaggtcacattcagagtggattacac 397
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 186 aaggtgaaggctgtgacttctggggactgc 215
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
to top
>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence
          Length = 84869

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 315  gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgc 362
            |||||||| ||||| |||||||||| ||| ||| ||||||||||||||
Sbjct: 8643 gatgagccttttgcatgggaaagcaaggaatttttgaggaaactttgc 8596
to top
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 315   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaa 369
             |||||||| ||||| ||||||||||  || ||| |||||||||||||| ||||||
Sbjct: 39695 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaa 39641
to top
>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a,
             complete sequence
          Length = 65557

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 315   gatgagccatttgcttgggaaagcagggagtttctgaggaa 355
             ||||| |||||||| ||||||||||| |||| |||||||||
Sbjct: 54104 gatgaaccatttgcatgggaaagcagagagtatctgaggaa 54064



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 315   gatgagccatttgcttgggaaagcagggagtttctgaggaa 355
             ||||| |||||||| ||||||||||| |||| |||||||||
Sbjct: 38111 gatgaaccatttgcatgggaaagcagagagtatctgaggaa 38071



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 315   gatgagccatttgcttgggaaagcagggagtttctgaggaa 355
             ||||| |||||||| ||||||||||| |||| |||||||||
Sbjct: 25201 gatgaaccatttgcatgggaaagcagagagtatctgaggaa 25161
to top
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 105   aggcggaggccgctcgccgccg 126
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
to top
>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7
          Length = 24748

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 294   ctggctcgtcgtggtggagtc 314
             |||||||||||||||||||||
Sbjct: 16499 ctggctcgtcgtggtggagtc 16519
to top
>gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, complete sequence
          Length = 23535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   ctggctcgtcgtggtggagtc 314
             |||||||||||||||||||||
Sbjct: 14723 ctggctcgtcgtggtggagtc 14703
to top
>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 262323

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   gagtttctgaggaaactttg 361
             ||||||||||||||||||||
Sbjct: 97730 gagtttctgaggaaactttg 97749
to top
>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    ccagagaagtccatcactct 271
              ||||||||||||||||||||
Sbjct: 148918 ccagagaagtccatcactct 148937
to top
>gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partial sequence
          Length = 8390

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 322  catttgcttgggaaagcagg 341
            ||||||||||||||||||||
Sbjct: 7409 catttgcttgggaaagcagg 7428
to top
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ggcggaggccgctcgccgcc 125
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763
to top
>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3
             Contains ESTs, STSs, GSSs and a CpG island. Contains part
             of a novel gene for a protein similar to rat
             transporter-like protein (CTL1) and the CNN3 gene for two
             isoforms of acidic calponin 3, complete sequence
          Length = 106277

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   aaagcagggagtttctgaggaaac 357
             |||||||| |||||||||||||||
Sbjct: 27652 aaagcaggcagtttctgaggaaac 27629
to top
>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   ccagagaagtccatcactct 271
             ||||||||||||||||||||
Sbjct: 18393 ccagagaagtccatcactct 18374
to top
>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence
          Length = 182165

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 334   aaagcagggagtttctgaggaaac 357
             |||||||| |||||||||||||||
Sbjct: 56221 aaagcaggcagtttctgaggaaac 56244
to top
>gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, complete sequence
          Length = 80506

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   agtttctgaggaaactttgc 362
             ||||||||||||||||||||
Sbjct: 33555 agtttctgaggaaactttgc 33536
to top
>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20,
           complete sequence
          Length = 108164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 aaagcagggagtttctgagg 353
           ||||||||||||||||||||
Sbjct: 303 aaagcagggagtttctgagg 284
to top
>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   ccagagaagtccatcactct 271
             ||||||||||||||||||||
Sbjct: 66033 ccagagaagtccatcactct 66052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,591,320
Number of Sequences: 3902068
Number of extensions: 3591320
Number of successful extensions: 68223
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68124
Number of HSP's gapped (non-prelim): 95
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top