ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3020 Score = 123 bits (62), Expect = 4e-25 Identities = 161/194 (82%) Strand = Plus / Plus Query: 141 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 200 |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || || Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176 Query: 201 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 260 ||||||||| |||| ||| || ||||||| || ||| ||||| | || || ||| Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236 Query: 261 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 320 ||||||||||||||| | |||||||| | ||||||||||||||||||||||| ||||| Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296 Query: 321 ggtgtcccccgggg 334 ||| |||||||||| Sbjct: 297 ggtctcccccgggg 310
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 123 bits (62), Expect = 4e-25 Identities = 161/194 (82%) Strand = Plus / Plus Query: 141 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 200 |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || || Sbjct: 6598438 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 6598497 Query: 201 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 260 ||||||||| |||| ||| || ||||||| || ||| ||||| | || || ||| Sbjct: 6598498 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 6598557 Query: 261 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 320 ||||||||||||||| | |||||||| | ||||||||||||||||||||||| ||||| Sbjct: 6598558 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 6598617 Query: 321 ggtgtcccccgggg 334 ||| |||||||||| Sbjct: 6598618 ggtctcccccgggg 6598631
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 123 bits (62), Expect = 4e-25 Identities = 161/194 (82%) Strand = Plus / Plus Query: 141 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 200 |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || || Sbjct: 32813 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 32872 Query: 201 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 260 ||||||||| |||| ||| || ||||||| || ||| ||||| | || || ||| Sbjct: 32873 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 32932 Query: 261 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 320 ||||||||||||||| | |||||||| | ||||||||||||||||||||||| ||||| Sbjct: 32933 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 32992 Query: 321 ggtgtcccccgggg 334 ||| |||||||||| Sbjct: 32993 ggtctcccccgggg 33006
>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full insert sequence Length = 3020 Score = 123 bits (62), Expect = 4e-25 Identities = 161/194 (82%) Strand = Plus / Plus Query: 141 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 200 |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || || Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176 Query: 201 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 260 ||||||||| |||| ||| || ||||||| || ||| ||||| | || || ||| Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236 Query: 261 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 320 ||||||||||||||| | |||||||| | ||||||||||||||||||||||| ||||| Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296 Query: 321 ggtgtcccccgggg 334 ||| |||||||||| Sbjct: 297 ggtctcccccgggg 310
>ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2622 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 |||||||||||||||||| | |||||||| |||||||||||||| || | ||| |||| Sbjct: 28 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 87 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||| | ||| || ||| || ||||||||||| |||||||| Sbjct: 88 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 147 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 148 acccgcttcctcgtcctcaacgccgccgacctcg 181
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 |||||||||||||||||| | |||||||| |||||||||||||| || | ||| |||| Sbjct: 11799304 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 11799363 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||| | ||| || ||| || ||||||||||| |||||||| Sbjct: 11799364 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 11799423 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 11799424 acccgcttcctcgtcctcaacgccgccgacctcg 11799457 Score = 83.8 bits (42), Expect = 4e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 ||||||||| |||||||| | |||||||| |||||||||||||| || | |||| ||| Sbjct: 11790120 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 11790179 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||| ||| ||| |||| | ||| | ||| || |||||||||| |||||||| Sbjct: 11790180 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 11790239 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 11790240 acccgcttcctcgtcctcaacgccgccgacctcg 11790273
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 |||||||||||||||||| | |||||||| |||||||||||||| || | ||| |||| Sbjct: 42122 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 42181 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||| | ||| || ||| || ||||||||||| |||||||| Sbjct: 42182 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 42241 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 42242 acccgcttcctcgtcctcaacgccgccgacctcg 42275 Score = 83.8 bits (42), Expect = 4e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 ||||||||| |||||||| | |||||||| |||||||||||||| || | |||| ||| Sbjct: 32938 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 32997 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||| ||| ||| |||| | ||| | ||| || |||||||||| |||||||| Sbjct: 32998 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 33057 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 33058 acccgcttcctcgtcctcaacgccgccgacctcg 33091
>ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2984 Score = 83.8 bits (42), Expect = 4e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 ||||||||| |||||||| | |||||||| |||||||||||||| || | |||| ||| Sbjct: 23 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 82 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||| ||| ||| |||| | ||| | ||| || |||||||||| |||||||| Sbjct: 83 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 142 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 143 acccgcttcctcgtcctcaacgccgccgacctcg 176
>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full insert sequence Length = 2985 Score = 83.8 bits (42), Expect = 4e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 166 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 225 ||||||||| |||||||| | |||||||| |||||||||||||| || | |||| ||| Sbjct: 24 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 83 Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||| ||| ||| |||| | ||| | ||| || |||||||||| |||||||| Sbjct: 84 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 143 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| ||||||||||||||||||| Sbjct: 144 acccgcttcctcgtcctcaacgccgccgacctcg 177
>ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2685 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||||| | ||||| | | ||| |||||| |||| |||| || Sbjct: 88 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 147 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| |||||||||||||| |||| Sbjct: 148 acccgattcctcgtcctcaacgccgccgagctcg 181
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||||| | ||||| | | ||| |||||| |||| |||| || Sbjct: 19014761 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 19014820 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| |||||||||||||| |||| Sbjct: 19014821 acccgattcctcgtcctcaacgccgccgagctcg 19014854
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||||| | ||||| | | ||| |||||| |||| |||| || Sbjct: 99681 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 99740 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| |||||||||||||| |||| Sbjct: 99741 acccgattcctcgtcctcaacgccgccgagctcg 99774
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full insert sequence Length = 2975 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||||| | ||||| | | ||| |||||| |||| |||| || Sbjct: 187 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 246 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| |||||||||||||| |||| Sbjct: 247 acccgattcctcgtcctcaacgccgccgagctcg 280
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 226 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 285 ||||||||||||||| ||||| | ||||| | | ||| |||||| |||| |||| || Sbjct: 39548 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 39607 Query: 286 acgcgtttcctcgtgctcaacgccgccgacctcg 319 || || |||||||| |||||||||||||| |||| Sbjct: 39608 acccgattcctcgtcctcaacgccgccgagctcg 39641
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.083 Identities = 26/27 (96%) Strand = Plus / Minus Query: 119 aggcgaccatggcggcggagctggagc 145 |||||||| |||||||||||||||||| Sbjct: 86379 aggcgaccgtggcggcggagctggagc 86353
>ref|XM_754661.1| Ustilago maydis 521 hypothetical protein (UM03607.1) partial mRNA Length = 5148 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 106 ccaccgacggccgaggcgaccatggc 131 ||||||||||||||| |||||||||| Sbjct: 539 ccaccgacggccgagtcgaccatggc 514
>gb|DQ103310.1| Phytophthora ramorum clone F07,11A microsatellite 97 sequence Length = 312 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ctcaacgccgccgacctcgagg 322 |||||||||||||||||||||| Sbjct: 226 ctcaacgccgccgacctcgagg 205
>gb|DQ103308.1| Phytophthora ramorum clone D07,7A microsatellite 97 sequence Length = 303 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ctcaacgccgccgacctcgagg 322 |||||||||||||||||||||| Sbjct: 214 ctcaacgccgccgacctcgagg 193
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 141 ggagcagagcgccgagcacttcagggggcaggcg 174 |||||||||||| ||||| |||||||| |||||| Sbjct: 12319124 ggagcagagcgcggagcagttcaggggccaggcg 12319091 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcgctggctcggtgtcggtc 264 |||||||||||||||||||| Sbjct: 18027635 tcgctggctcggtgtcggtc 18027616
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 cgacggccgaggcgaccatggc 131 |||||||||||||||||||||| Sbjct: 5315985 cgacggccgaggcgaccatggc 5316006 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ccgacggccgaggcgaccatggcgg 133 |||||||||||||||||| |||||| Sbjct: 2745308 ccgacggccgaggcgaccctggcgg 2745332
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 141 ggagcagagcgccgagcacttcagggggcaggcg 174 |||||||||||| ||||| |||||||| |||||| Sbjct: 35584 ggagcagagcgcggagcagttcaggggccaggcg 35551
>emb|CT573025.12| Mouse DNA sequence from clone RP23-36H17 on chromosome 14, complete sequence Length = 116550 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tttttggttaaagtatataatc 44 |||||||||||||||||||||| Sbjct: 75063 tttttggttaaagtatataatc 75042
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 cgacgtcgccgcgcccacgcgtttcctcg 298 |||||||||||||||| |||| ||||||| Sbjct: 97286 cgacgtcgccgcgccctcgcggttcctcg 97258
>emb|BX059458.1|CNS09I1I Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 920 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 tctctccttccctcacactcc 107 ||||||||||||||||||||| Sbjct: 405 tctctccttccctcacactcc 425
>emb|BX059457.1|CNS09I1H Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 925 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 tctctccttccctcacactcc 107 ||||||||||||||||||||| Sbjct: 922 tctctccttccctcacactcc 902
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 cgccgccgacctcgaggtgtc 326 ||||||||||||||||||||| Sbjct: 1808 cgccgccgacctcgaggtgtc 1788
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 296 tcgtgctcaacgccgccgacctcga 320 |||||||||||| |||||||||||| Sbjct: 4430018 tcgtgctcaacgacgccgacctcga 4430042
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 cgacgtcgccgcgcccacgcgtttcctcg 298 |||||||||||||||| |||| ||||||| Sbjct: 18304074 cgacgtcgccgcgccctcgcggttcctcg 18304046
>ref|XM_307687.2| Anopheles gambiae str. PEST ENSANGP00000017104 (ENSANGG00000014615), partial mRNA Length = 672 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 tctctccttccctcacactcc 107 ||||||||||||||||||||| Sbjct: 474 tctctccttccctcacactcc 454
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 gcggctgccgggcttcgcggc 194 ||||||||||||||||||||| Sbjct: 373692 gcggctgccgggcttcgcggc 373712
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ctggctcggtgtcggtctcc 267 |||||||||||||||||||| Sbjct: 165172 ctggctcggtgtcggtctcc 165191
>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0095J10 map near S6115, complete sequence Length = 123717 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctggctcggtgtcggtctcc 267 |||||||||||||||||||| Sbjct: 90805 ctggctcggtgtcggtctcc 90786
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tctctccttccctcacactc 106 |||||||||||||||||||| Sbjct: 193567 tctctccttccctcacactc 193548
>emb|Z68315.1|CEF28C6 Caenorhabditis elegans Cosmid F28C6, complete sequence Length = 24032 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggcggcggagctggagcaga 148 |||||||||||||||||||| Sbjct: 13359 ggcggcggagctggagcaga 13378
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gaccatggcggcggagctgg 142 |||||||||||||||||||| Sbjct: 394720 gaccatggcggcggagctgg 394739
>emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment 18/24 Length = 283050 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agcatccgacgcttgcaaat 87 |||||||||||||||||||| Sbjct: 121403 agcatccgacgcttgcaaat 121422
>gb|AE005942.1| Caulobacter crescentus CB15 section 268 of 359 of the complete genome Length = 10254 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gcaggcgcggctgccgggct 187 |||||||||||||||||||| Sbjct: 4986 gcaggcgcggctgccgggct 4967
>ref|NM_063421.2| Caenorhabditis elegans Cleavage and Polyadenylation Factor family member (cpf-1) (cpf-1) mRNA, complete cds Length = 1312 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggcggcggagctggagcaga 148 |||||||||||||||||||| Sbjct: 131 ggcggcggagctggagcaga 112
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctggctcggtgtcggtctcc 267 |||||||||||||||||||| Sbjct: 13018908 ctggctcggtgtcggtctcc 13018889
>gb|AC107304.5| Homo sapiens 3 BAC RP11-598F17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179532 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aaagtgctttttggttaaag 35 |||||||||||||||||||| Sbjct: 137237 aaagtgctttttggttaaag 137256
>dbj|AP006524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077M23 Length = 167264 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcgctggctcggtgtcggtc 264 |||||||||||||||||||| Sbjct: 23285 tcgctggctcggtgtcggtc 23266
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcgctggctcggtgtcggtc 264 |||||||||||||||||||| Sbjct: 93941 tcgctggctcggtgtcggtc 93922
>dbj|AK109974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C09, full insert sequence Length = 4771 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 ccgacggccgaggcgaccatggcg 132 |||||||||||| ||||||||||| Sbjct: 78 ccgacggccgagtcgaccatggcg 55
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctggctcggtgtcggtctcc 267 |||||||||||||||||||| Sbjct: 13099087 ctggctcggtgtcggtctcc 13099068
>emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chromosome X, complete sequence Length = 173365 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 atctctccttccctcacact 105 |||||||||||||||||||| Sbjct: 47304 atctctccttccctcacact 47323
>gb|AC092957.6| Homo sapiens 3 BAC RP11-635I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161585 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaagcaaagtgctttttggttaaa 34 |||||||||||||||||| ||||| Sbjct: 50127 aaagcaaagtgctttttgtttaaa 50150
>dbj|D12511.1|MRUPUO M.rubens gene for putrescine oxidase, complete cds Length = 2386 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gaccatggcggcggagctgg 142 |||||||||||||||||||| Sbjct: 1195 gaccatggcggcggagctgg 1214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,382,355 Number of Sequences: 3902068 Number of extensions: 2382355 Number of successful extensions: 56156 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55224 Number of HSP's gapped (non-prelim): 924 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
