ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 38 5.6
2emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 38 5.6
3gb|AE005931.1| Caulobacter crescentus CB15 section 257 of 359 of... 38 5.6

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 6       tgcagtgcaagaagtaagg 24
               |||||||||||||||||||
Sbjct: 3547873 tgcagtgcaagaagtaagg 3547891



 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     gcaggccgtcgagaaggcg 117
              |||||||||||||||||||
Sbjct: 940158 gcaggccgtcgagaaggcg 940140



to top

>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   gccgtcgagaaggcggagg 121
             |||||||||||||||||||
Sbjct: 60430 gccgtcgagaaggcggagg 60412



to top

>gb|AE005931.1| Caulobacter crescentus CB15 section 257 of 359 of the complete genome
          Length = 8649

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 93   cggcatgcaggccgtcgagaaggcgga 119
            ||||| ||||||||| |||||||||||
Sbjct: 3918 cggcaagcaggccgtggagaaggcgga 3944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,632
Number of Sequences: 3902068
Number of extensions: 236632
Number of successful extensions: 16100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16061
Number of HSP's gapped (non-prelim): 39
length of query: 122
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 101
effective length of database: 17,151,101,840
effective search space: 1732261285840
effective search space used: 1732261285840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top