Clone Name	bastl54d12
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_752666.1| Ustilago maydis 521 hypothetical protein (UM016...	46	0.10
2	ref|XM_883242.1| PREDICTED: Bos taurus hypothetical protein LOC6...	44	0.40
3	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
4	dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
5	dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
6	gb|BC076687.1| Xenopus tropicalis actinin, alpha 4, mRNA (cDNA c...	42	1.6
7	gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence	42	1.6
8	gb|BC077918.1| Xenopus laevis actinin, alpha 4, mRNA (cDNA clone...	42	1.6
9	gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome...	42	1.6
10	ref|NM_001006809.1| Xenopus tropicalis actinin, alpha 4 (actn4),...	42	1.6
11	gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple...	42	1.6
12	gb|AC010530.8| Homo sapiens chromosome 16 clone RP11-167P11, com...	42	1.6
13	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
14	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
15	emb|AJ339491.1|HSA339491 Homo sapiens genomic sequence surroundi...	42	1.6
16	dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
17	emb|CR926289.2| Xenopus tropicalis finished cDNA, clone TEgg046d23	42	1.6
18	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	42	1.6
19	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	1.6
20	emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb...	42	1.6
21	gb|AC171638.2| Rhesus Macaque BAC CH250-504D18 (Children's Hosp...	42	1.6
22	ref|XM_509911.1| PREDICTED: Pan troglodytes similar to thyroid t...	40	6.2
23	gb|AY536286.1| Calocera cornea isolate AFTOL-ID 438 RNA polymera...	40	6.2
24	gb|AY632359.1| Gossypium hirsutum BAC 155C17, complete sequence	40	6.2
25	ref|XM_982669.1| PREDICTED: Mus musculus ring finger and KH doma...	40	6.2
26	ref|XM_620516.3| PREDICTED: Mus musculus ring finger and KH doma...	40	6.2
27	ref|XM_386343.1| Gibberella zeae PH-1 chromosome 3 hypothetical ...	40	6.2
28	gb|BC006221.2| Homo sapiens thyroid transcription factor 1, mRNA...	40	6.2
29	ref|XM_501480.1| Yarrowia lipolytica CLIB122, YALI0C05599g predi...	40	6.2
30	gb|BT009773.1| Homo sapiens thyroid transcription factor 1 mRNA,...	40	6.2
31	emb|AL353739.4| Human DNA sequence from clone RP11-19D15 on chro...	40	6.2
32	emb|X82850.1|HSTTF1 H.sapiens mRNA for thyroid transcript factor 1	40	6.2
33	emb|CR604190.1| full-length cDNA clone CS0DJ008YF03 of T cells (...	40	6.2
34	emb|CR600885.1| full-length cDNA clone CS0DH006YF24 of T cells (...	40	6.2
35	gb|AF302035.1|AF302035 Pittosporum koghiense internal transcribe...	40	6.2
36	ref|NM_003317.3| Homo sapiens thyroid transcription factor 1 (TI...	40	6.2
37	dbj|AB179471.1| Macaca fascicularis testis cDNA clone: QtsA-2080...	40	6.2
38	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
39	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
40	ref|XM_218846.3| PREDICTED: Rattus norvegicus ring finger and KH...	40	6.2
41	dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
42	dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
43	dbj|AK173330.1| Mus musculus premature mRNA for mKIAA2009 protein	40	6.2
44	dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
45	dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
46	dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
47	dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
48	gb|AY889859.1| Synthetic construct Homo sapiens clone FLH023225....	40	6.2
49	dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
50	gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, com...	40	6.2
51	gb|U19816.1|HSU19816 Human thyroid transcription factor-1 (TTF-1...	40	6.2
52	emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...	40	6.2
53	gb|U33749.1|HSU33749 Human thyroid transcription factor-1 (TTF-1...	40	6.2
54	gb|U82718.1|CPU82718 Cavia porcellus thyroid transcription facto...	40	6.2
55	emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8...	40	6.2
56	gb|U43203.1|HSU43203 Human thyroid transcription factor 1 (TTF-1...	40	6.2
57	gb|U19756.1|HSU19756 Human thyroid transcription factor 1 mRNA, ...	40	6.2
58	dbj|D85195.1| Oryza sativa (japonica cultivar-group) DNA contain...	40	6.2
59	dbj|D50741.1| Homo sapiens mRNA for Thyroid transcriptional fact...	40	6.2
60	dbj|D50740.1| Homo sapiens mRNA for thyroid transcriptional fact...	40	6.2
61	dbj|D50739.1| Homo sapiens DNA for thyroid transcription factor-...	40	6.2

---

>ref|XM_752666.1| Ustilago maydis 521 hypothetical protein (UM01612.1) partial mRNA
          Length = 5604

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 32   cggcggcggcgggggaaagaagaagaa 58
            |||||||||||| ||||||||||||||
Sbjct: 4611 cggcggcggcggaggaaagaagaagaa 4637

---

>ref|XM_883242.1| PREDICTED: Bos taurus hypothetical protein LOC617984 (LOC617984),
           partial mRNA
          Length = 900

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 78  cagggagttcgaggggaaggag 99
           ||||||||||||||||||||||
Sbjct: 356 cagggagttcgaggggaaggag 335

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 31       gcggcggcggcgggggaaagaa 52
                ||||||||||||||||||||||
Sbjct: 34969489 gcggcggcggcgggggaaagaa 34969510



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 29       cagcggcggcggcgggggaa 48
                ||||||||||||||||||||
Sbjct: 24245981 cagcggcggcggcgggggaa 24245962

---

>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1529_G03
          Length = 100635

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    gcggcggcggcgggggaaagaa 52
             ||||||||||||||||||||||
Sbjct: 98853 gcggcggcggcgggggaaagaa 98874

---

>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0703B11
          Length = 144074

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    gcggcggcggcgggggaaagaa 52
             ||||||||||||||||||||||
Sbjct: 13717 gcggcggcggcgggggaaagaa 13738

---

>gb|BC076687.1| Xenopus tropicalis actinin, alpha 4, mRNA (cDNA clone MGC:79707
            IMAGE:6981138), complete cds
          Length = 3957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  aggccaagatggaggagattg 200
            |||||||||||||||||||||
Sbjct: 2147 aggccaagatggaggagattg 2167

---

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 302     cagcacgccggtttgatcggc 322
               |||||||||||||||||||||
Sbjct: 2201324 cagcacgccggtttgatcggc 2201344

---

>gb|BC077918.1| Xenopus laevis actinin, alpha 4, mRNA (cDNA clone MGC:80841
            IMAGE:5514329), complete cds
          Length = 4361

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  aggccaagatggaggagattg 200
            |||||||||||||||||||||
Sbjct: 2111 aggccaagatggaggagattg 2131

---

>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0066C04, complete sequence
          Length = 133944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    agaaaagaaacgacagcggcggcgg 40
             ||||| |||||||||||||||||||
Sbjct: 43621 agaaaggaaacgacagcggcggcgg 43645

---

>ref|NM_001006809.1| Xenopus tropicalis actinin, alpha 4 (actn4), mRNA
          Length = 3957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  aggccaagatggaggagattg 200
            |||||||||||||||||||||
Sbjct: 2147 aggccaagatggaggagattg 2167

---

>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 29     cagcggcggcggcgggggaaagaag 53
              ||||||||||||||| |||||||||
Sbjct: 144611 cagcggcggcggcggcggaaagaag 144635

---

>gb|AC010530.8| Homo sapiens chromosome 16 clone RP11-167P11, complete sequence
          Length = 193514

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     gacagcggcggcggcggggga 47
              |||||||||||||||||||||
Sbjct: 149040 gacagcggcggcggcggggga 149020

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 25       acgacagcggcggcggcgggg 45
                |||||||||||||||||||||
Sbjct: 18376088 acgacagcggcggcggcgggg 18376068

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 16       agaaaagaaacgacagcggcggcgg 40
                ||||| |||||||||||||||||||
Sbjct: 11704105 agaaaggaaacgacagcggcggcgg 11704081

---

>emb|AJ339491.1|HSA339491 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-ZE10C
          Length = 706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  aaacgacagcggcggcggcgg 43
           |||||||||||||||||||||
Sbjct: 397 aaacgacagcggcggcggcgg 417

---

>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full
           insert sequence
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  acgacagcggcggcggcgggg 45
           |||||||||||||||||||||
Sbjct: 279 acgacagcggcggcggcgggg 259

---

>emb|CR926289.2| Xenopus tropicalis finished cDNA, clone TEgg046d23
          Length = 3927

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  aggccaagatggaggagattg 200
            |||||||||||||||||||||
Sbjct: 2118 aggccaagatggaggagattg 2138

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 16       agaaaagaaacgacagcggcggcgg 40
                ||||| |||||||||||||||||||
Sbjct: 11783294 agaaaggaaacgacagcggcggcgg 11783270

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 25       acgacagcggcggcggcgggg 45
                |||||||||||||||||||||
Sbjct: 18302314 acgacagcggcggcggcgggg 18302294

---

>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    acgacagcggcggcggcgggg 45
             |||||||||||||||||||||
Sbjct: 27987 acgacagcggcggcggcgggg 27967

---

>gb|AC171638.2| Rhesus Macaque  BAC CH250-504D18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 160646

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   tgcccaaggggagcaggggtt 413
             |||||||||||||||||||||
Sbjct: 37383 tgcccaaggggagcaggggtt 37363

---

>ref|XM_509911.1| PREDICTED: Pan troglodytes similar to thyroid transcription factor
           1 (LOC452867), mRNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 889 gacagcggcggcggcggggg 908

---

>gb|AY536286.1| Calocera cornea isolate AFTOL-ID 438 RNA polymerase II second largest
            subunit (RPB2) gene, partial cds
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ttgatcggcaatgaaggtga 333
            ||||||||||||||||||||
Sbjct: 1938 ttgatcggcaatgaaggtga 1957

---

>gb|AY632359.1| Gossypium hirsutum BAC 155C17, complete sequence
          Length = 103930

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cagcggcggcggcgggggaa 48
             ||||||||||||||||||||
Sbjct: 10490 cagcggcggcggcgggggaa 10471

---

>ref|XM_982669.1| PREDICTED: Mus musculus ring finger and KH domain containing 3
           (Rkhd3), mRNA
          Length = 3066

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 24  aacgacagcggcggcggcggggga 47
           |||| |||||||||||||||||||
Sbjct: 820 aacggcagcggcggcggcggggga 843

---

>ref|XM_620516.3| PREDICTED: Mus musculus ring finger and KH domain containing 3
           (Rkhd3), mRNA
          Length = 3551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 24  aacgacagcggcggcggcggggga 47
           |||| |||||||||||||||||||
Sbjct: 487 aacggcagcggcggcggcggggga 510

---

>ref|XM_386343.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06167.1)
           partial mRNA
          Length = 657

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gaggcacaggaggccaagat 189
           ||||||||||||||||||||
Sbjct: 616 gaggcacaggaggccaagat 635

---

>gb|BC006221.2| Homo sapiens thyroid transcription factor 1, mRNA (cDNA clone
           MGC:10523 IMAGE:3941576), complete cds
          Length = 2131

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 814 gacagcggcggcggcggggg 833

---

>ref|XM_501480.1| Yarrowia lipolytica CLIB122, YALI0C05599g predicted mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  aggaggccaagatggaggag 196
            ||||||||||||||||||||
Sbjct: 1433 aggaggccaagatggaggag 1452

---

>gb|BT009773.1| Homo sapiens thyroid transcription factor 1 mRNA, complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 784 gacagcggcggcggcggggg 803

---

>emb|AL353739.4| Human DNA sequence from clone RP11-19D15 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 101388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 119   gaggagctgcatcaggctggaatctgca 146
             |||||||||||||||||||  |||||||
Sbjct: 86302 gaggagctgcatcaggctgttatctgca 86275

---

>emb|X82850.1|HSTTF1 H.sapiens mRNA for thyroid transcript factor 1
          Length = 1316

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 708 gacagcggcggcggcggggg 727

---

>emb|CR604190.1| full-length cDNA clone CS0DJ008YF03 of T cells (Jurkat cell line) Cot
            10-normalized of Homo sapiens (human)
          Length = 2280

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 1030 gacagcggcggcggcggggg 1049

---

>emb|CR600885.1| full-length cDNA clone CS0DH006YF24 of T cells (Jurkat cell line)
           of Homo sapiens (human)
          Length = 1692

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 410 gacagcggcggcggcggggg 429

---

>gb|AF302035.1|AF302035 Pittosporum koghiense internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 591

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 atcgaggcacaggaggccaa 186
           ||||||||||||||||||||
Sbjct: 451 atcgaggcacaggaggccaa 432

---

>ref|NM_003317.3| Homo sapiens thyroid transcription factor 1 (TITF1), mRNA
          Length = 2352

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 1035 gacagcggcggcggcggggg 1054

---

>dbj|AB179471.1| Macaca fascicularis testis cDNA clone: QtsA-20808, similar to human
           SH3-domain GRB2-like endophilin B1 (SH3GLB1), mRNA,
           RefSeq: NM_016009.2
          Length = 2262

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 22  gaaacgacagcggcggcggcgggg 45
           ||||||||||| ||||||||||||
Sbjct: 154 gaaacgacagctgcggcggcgggg 177

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 31       gcggcggcggcgggggaaagaaga 54
                |||||||||||| |||||||||||
Sbjct: 11607013 gcggcggcggcgtgggaaagaaga 11606990



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 31      gcggcggcggcgggggaaagaaga 54
               |||||||||||| |||||||||||
Sbjct: 9516768 gcggcggcggcgtgggaaagaaga 9516791

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 31      gcggcggcggcgggggaaag 50
               ||||||||||||||||||||
Sbjct: 8290439 gcggcggcggcgggggaaag 8290458

---

>ref|XM_218846.3| PREDICTED: Rattus norvegicus ring finger and KH domain containing 3
            (predicted) (Rkhd3_predicted), mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 24   aacgacagcggcggcggcggggga 47
            |||| |||||||||||||||||||
Sbjct: 1501 aacggcagcggcggcggcggggga 1524

---

>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0046B10
          Length = 142596

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cagcggcggcggcgggggaa 48
             ||||||||||||||||||||
Sbjct: 70545 cagcggcggcggcgggggaa 70526

---

>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1134_F06
          Length = 130968

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     gcggcggcggcgggggaaag 50
              ||||||||||||||||||||
Sbjct: 122585 gcggcggcggcgggggaaag 122604

---

>dbj|AK173330.1| Mus musculus premature mRNA for mKIAA2009 protein
          Length = 3435

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 24  aacgacagcggcggcggcggggga 47
           |||| |||||||||||||||||||
Sbjct: 337 aacggcagcggcggcggcggggga 360

---

>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1120F06
          Length = 186712

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     gcggcggcggcgggggaaagaaga 54
              |||||||||||| |||||||||||
Sbjct: 170671 gcggcggcggcgtgggaaagaaga 170648

---

>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1059D01
          Length = 158792

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    gcggcggcggcgggggaaagaaga 54
             |||||||||||| |||||||||||
Sbjct: 24498 gcggcggcggcgtgggaaagaaga 24521

---

>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1100H02
          Length = 128773

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    gcggcggcggcgggggaaagaaga 54
             |||||||||||| |||||||||||
Sbjct: 98754 gcggcggcggcgtgggaaagaaga 98777

---

>dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1272H04
          Length = 87113

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    gcggcggcggcgggggaaagaaga 54
             |||||||||||| |||||||||||
Sbjct: 52385 gcggcggcggcgtgggaaagaaga 52362

---

>gb|AY889859.1| Synthetic construct Homo sapiens clone FLH023225.01X thyroid
           transcription factor 1 (TITF1) mRNA, complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 784 gacagcggcggcggcggggg 803

---

>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0090H18
          Length = 174842

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    gcggcggcggcgggggaaag 50
             ||||||||||||||||||||
Sbjct: 67110 gcggcggcggcgggggaaag 67129

---

>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence
          Length = 226595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    aacgacagcggcggcggcggggga 47
             |||| |||||||||||||||||||
Sbjct: 84560 aacggcagcggcggcggcggggga 84583

---

>gb|U19816.1|HSU19816 Human thyroid transcription factor-1 (TTF-1) gene, complete cds
          Length = 3293

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 1995 gacagcggcggcggcggggg 2014

---

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aggaggccaagatggaggag 196
              ||||||||||||||||||||
Sbjct: 715704 aggaggccaagatggaggag 715723

---

>gb|U33749.1|HSU33749 Human thyroid transcription factor-1 (TTF-1) mRNA, complete cds
          Length = 2336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 1035 gacagcggcggcggcggggg 1054

---

>gb|U82718.1|CPU82718 Cavia porcellus thyroid transcription factor-1 (TTF-1) mRNA,
           partial cds
          Length = 337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 214 gacagcggcggcggcggggg 233

---

>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gacagcggcggcggcggggg 46
             ||||||||||||||||||||
Sbjct: 69674 gacagcggcggcggcggggg 69693

---

>gb|U43203.1|HSU43203 Human thyroid transcription factor 1 (TTF-1) mRNA, complete cds
          Length = 2202

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 866 gacagcggcggcggcggggg 885

---

>gb|U19756.1|HSU19756 Human thyroid transcription factor 1 mRNA, complete cds
          Length = 1116

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 694 gacagcggcggcggcggggg 713

---

>dbj|D85195.1| Oryza sativa (japonica cultivar-group) DNA containing a sequence
           similar to ribosomal protein s11
          Length = 1941

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 29  cagcggcggcggcgggggaa 48
           ||||||||||||||||||||
Sbjct: 132 cagcggcggcggcgggggaa 113

---

>dbj|D50741.1| Homo sapiens mRNA for Thyroid transcriptional factor-1 truncated
            form, complete cds
          Length = 2198

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 1707 gacagcggcggcggcggggg 1726

---

>dbj|D50740.1| Homo sapiens mRNA for thyroid transcriptional factor-1, complete
           cds
          Length = 1429

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gacagcggcggcggcggggg 46
           ||||||||||||||||||||
Sbjct: 938 gacagcggcggcggcggggg 957

---

>dbj|D50739.1| Homo sapiens DNA for thyroid transcription factor-1, complete cds
          Length = 3140

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagcggcggcggcggggg 46
            ||||||||||||||||||||
Sbjct: 2649 gacagcggcggcggcggggg 2668


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,445,273
Number of Sequences: 3902068
Number of extensions: 5445273
Number of successful extensions: 115691
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114506
Number of HSP's gapped (non-prelim): 1185
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---